Wall clock time and date at job start Tue Mar 31 2020 05:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.45752 * 117.94153 * 2 1 4 4 C 1.52925 * 110.48432 * 199.07259 * 3 2 1 5 5 H 1.09002 * 109.74063 * 69.07884 * 4 3 2 6 6 C 1.50697 * 109.60474 * 189.48677 * 4 3 2 7 7 O 1.21281 * 119.99472 * 119.18336 * 6 4 3 8 8 N 1.34771 * 120.00185 * 299.18813 * 6 4 3 9 9 C 1.46495 * 120.00127 * 180.02562 * 8 6 4 10 10 C 1.53003 * 109.47394 * 179.97438 * 9 8 6 11 11 H 1.09004 * 115.51089 * 330.41395 * 10 9 8 12 12 C 1.52993 * 117.44575 * 184.99889 * 10 9 8 13 13 H 1.09006 * 119.54158 * 5.75827 * 12 10 9 14 14 C 1.54385 * 118.12394 * 160.85266 * 12 10 9 15 15 N 1.48150 * 104.72124 * 89.15146 * 14 12 10 16 16 C 1.36928 * 127.83918 * 140.47057 * 15 14 12 17 17 H 1.08001 * 120.00117 * 344.48780 * 16 15 14 18 18 C 1.38812 * 120.00217 * 164.48880 * 16 15 14 19 19 N 1.31622 * 119.99678 * 350.60172 * 18 16 15 20 20 Si 1.86796 * 120.00304 * 170.60091 * 18 16 15 21 21 H 1.48496 * 109.47402 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47250 * 120.00005 * 20 18 16 23 23 H 1.48505 * 109.47256 * 239.99949 * 20 18 16 24 24 C 1.48257 * 104.26768 * 320.57134 * 15 14 12 25 25 C 1.54280 * 61.50227 * 253.31191 * 12 10 9 26 26 H 1.09004 * 121.81872 * 107.96240 * 25 12 10 27 27 C 1.53350 * 108.67122 * 309.24352 * 4 3 2 28 28 C 1.53074 * 108.42376 * 67.53403 * 27 4 3 29 29 C 1.33355 * 117.94563 * 179.97438 * 2 1 3 30 30 O 1.21278 * 118.24538 * 357.80733 * 29 2 1 31 31 H 1.09001 * 109.46872 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47471 * 300.00844 * 1 2 3 33 33 H 1.08999 * 109.47075 * 60.00777 * 1 2 3 34 34 H 1.08995 * 109.30465 * 78.76298 * 3 2 1 35 35 H 1.08997 * 109.30385 * 319.37676 * 3 2 1 36 36 H 0.96995 * 119.99951 * 359.97438 * 8 6 4 37 37 H 1.09001 * 109.47233 * 59.99643 * 9 8 6 38 38 H 1.08997 * 109.47165 * 299.99709 * 9 8 6 39 39 H 1.09006 * 110.40662 * 207.99280 * 14 12 10 40 40 H 1.09004 * 110.40656 * 330.30654 * 14 12 10 41 41 H 0.97000 * 120.00072 * 179.97438 * 19 18 16 42 42 H 1.08999 * 110.29878 * 280.64983 * 24 15 14 43 43 H 1.08990 * 110.43669 * 158.26860 * 24 15 14 44 44 H 1.09002 * 109.67434 * 187.26000 * 27 4 3 45 45 H 1.08995 * 109.67673 * 307.79834 * 27 4 3 46 46 H 1.08995 * 109.40394 * 71.22492 * 28 27 4 47 47 H 1.09004 * 109.39668 * 191.06002 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1480 1.2876 0.0000 4 6 3.5949 1.1260 -0.4681 5 1 3.6128 0.8738 -1.5284 6 6 4.3463 2.4125 -0.2416 7 8 5.3110 2.4299 0.4932 8 7 3.9463 3.5436 -0.8556 9 6 4.6771 4.7941 -0.6358 10 6 4.0220 5.9164 -1.4435 11 1 3.5277 5.6055 -2.3639 12 6 4.7110 7.2824 -1.4399 13 1 5.6796 7.3946 -0.9526 14 6 4.3554 8.2798 -2.5634 15 7 3.1972 9.0403 -2.0391 16 6 2.9417 10.3790 -2.1717 17 1 3.7279 11.0504 -2.4839 18 6 1.6723 10.8732 -1.9049 19 7 0.6711 10.0422 -1.7057 20 14 1.3849 12.7173 -1.8284 21 1 2.6626 13.4286 -2.0865 22 1 0.3863 13.1057 -2.8567 23 1 0.8770 13.0837 -0.4819 24 6 2.3796 8.0225 -1.3365 25 6 3.4083 7.1128 -0.6309 26 1 3.4080 7.0841 0.4587 27 6 4.2493 -0.0012 0.3399 28 6 3.5839 -1.3239 -0.0483 29 6 2.0900 -1.1781 0.0005 30 8 1.4159 -2.1854 0.0419 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8898 33 1 -0.3633 0.5137 -0.8900 34 1 2.1398 1.6999 1.0090 35 1 1.6271 1.9718 -0.6698 36 1 3.1749 3.5295 -1.4435 37 1 5.7114 4.6717 -0.9571 38 1 4.6534 5.0473 0.4240 39 1 5.1937 8.9493 -2.7567 40 1 4.0793 7.7455 -3.4726 41 1 -0.2159 10.3875 -1.5189 42 1 1.7929 7.4481 -2.0534 43 1 1.7272 8.4978 -0.6042 44 1 5.3143 -0.0455 0.1120 45 1 4.1087 0.1815 1.4052 46 1 3.8881 -1.5997 -1.0580 47 1 3.8931 -2.1030 0.6486 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979099310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:11 Heat of formation + Delta-G solvation = -13.166648 kcal Electronic energy + Delta-G solvation = -26741.764480 eV Core-core repulsion = 22926.110511 eV Total energy + Delta-G solvation = -3815.653969 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.13239 -39.79963 -38.65478 -36.63878 -35.18381 -34.36198 -33.38418 -31.13935 -30.34723 -27.63649 -27.36448 -27.11988 -25.19688 -24.75245 -23.02206 -21.23609 -20.82915 -19.89966 -19.27026 -19.11296 -17.70566 -17.03529 -16.88291 -16.63885 -16.12260 -15.80698 -15.44151 -14.91033 -14.73521 -14.42581 -14.33356 -13.90881 -13.68434 -13.61730 -13.11359 -13.02808 -12.84644 -12.71076 -12.54801 -12.20866 -12.14918 -11.88735 -11.67193 -11.41226 -11.30975 -11.14589 -10.88796 -10.78015 -10.36308 -10.16150 -10.13711 -10.02613 -9.80237 -9.48748 -9.23054 -9.15585 -9.01312 -8.67962 -6.92748 -5.85966 -3.19920 2.25142 2.29045 2.62101 2.91093 3.33665 3.40232 3.42409 3.96023 4.06231 4.13190 4.20115 4.28966 4.40511 4.75596 4.77373 4.83132 4.86493 4.96254 5.08223 5.14931 5.21482 5.24924 5.29239 5.36365 5.39400 5.44506 5.53744 5.57311 5.69500 5.73679 5.77049 5.84700 5.87863 5.94054 6.16016 6.21962 6.47939 6.58521 6.64041 6.85212 7.00470 7.26934 7.29205 7.46296 7.65980 7.77068 7.96439 8.14384 9.05153 9.67996 10.44657 11.28571 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.021458 B = 0.002238 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.569481 B =12510.585092 C =13557.242819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.606 5.606 3 C 0.123 3.877 4 C -0.125 4.125 5 H 0.108 0.892 6 C 0.521 3.479 7 O -0.535 6.535 8 N -0.721 5.721 9 C 0.154 3.846 10 C -0.157 4.157 11 H 0.104 0.896 12 C -0.160 4.160 13 H 0.102 0.898 14 C 0.152 3.848 15 N -0.595 5.595 16 C -0.227 4.227 17 H 0.077 0.923 18 C -0.006 4.006 19 N -0.916 5.916 20 Si 0.912 3.088 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.183 3.817 25 C -0.166 4.166 26 H 0.104 0.896 27 C -0.104 4.104 28 C -0.134 4.134 29 C 0.515 3.485 30 O -0.556 6.556 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.403 0.597 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.024 0.976 41 H 0.254 0.746 42 H 0.023 0.977 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.079 0.921 46 H 0.102 0.898 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.334 -19.914 2.211 20.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.339 5.339 3 C -0.001 4.001 4 C -0.147 4.147 5 H 0.126 0.874 6 C 0.306 3.694 7 O -0.412 6.412 8 N -0.372 5.372 9 C 0.031 3.969 10 C -0.176 4.176 11 H 0.122 0.878 12 C -0.180 4.180 13 H 0.120 0.880 14 C 0.026 3.974 15 N -0.318 5.318 16 C -0.355 4.355 17 H 0.095 0.905 18 C -0.203 4.203 19 N -0.562 5.562 20 Si 0.743 3.257 21 H -0.203 1.203 22 H -0.217 1.217 23 H -0.216 1.216 24 C 0.058 3.942 25 C -0.186 4.186 26 H 0.122 0.878 27 C -0.142 4.142 28 C -0.173 4.173 29 C 0.304 3.696 30 O -0.434 6.434 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.237 0.763 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.042 0.958 41 H 0.064 0.936 42 H 0.041 0.959 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.097 0.903 46 H 0.120 0.880 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.513 -20.163 2.772 20.847 hybrid contribution -0.559 1.134 -0.288 1.297 sum 3.955 -19.029 2.484 19.593 Atomic orbital electron populations 1.21830 0.79028 1.04842 1.01812 1.47139 1.07765 1.05765 1.73198 1.21326 0.90924 0.85028 1.02794 1.21669 0.94984 0.94739 1.03283 0.87356 1.20155 0.84658 0.84532 0.80063 1.90730 1.27669 1.85700 1.37055 1.46077 1.33390 1.08836 1.48895 1.20874 0.95028 0.81232 0.99740 1.23154 1.04760 0.88856 1.00825 0.87773 1.23829 0.96834 0.94765 1.02606 0.87981 1.21166 0.91740 0.91944 0.92547 1.45232 1.22228 1.04311 1.60056 1.19042 0.94457 0.81026 1.40944 0.90510 1.24896 0.95115 0.98133 1.02166 1.69905 0.99867 1.32592 1.53824 0.86045 0.77795 0.84535 0.77364 1.20346 1.21673 1.21582 1.21066 0.90729 0.87587 0.94854 1.25054 0.98260 0.97976 0.97310 0.87795 1.21505 1.00963 0.91050 1.00652 1.21696 0.90695 0.99767 1.05190 1.20264 0.91139 0.82689 0.75468 1.90708 1.66426 1.35726 1.50582 0.88890 0.91905 0.91774 0.90674 0.89591 0.76264 0.91209 0.91214 0.93115 0.95812 0.93609 0.95909 0.89278 0.89217 0.90277 0.87958 0.87612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.50 10.48 59.85 0.63 1.12 16 2 N -0.61 -4.94 3.21 -182.85 -0.59 -5.53 16 3 C 0.12 0.80 5.57 -4.48 -0.02 0.78 16 4 C -0.12 -0.85 2.60 -91.63 -0.24 -1.09 16 5 H 0.11 0.58 8.12 -51.93 -0.42 0.15 16 6 C 0.52 5.13 7.13 -10.99 -0.08 5.05 16 7 O -0.54 -7.34 15.90 5.56 0.09 -7.25 16 8 N -0.72 -6.69 5.47 -60.30 -0.33 -7.02 16 9 C 0.15 1.79 5.96 -4.04 -0.02 1.77 16 10 C -0.16 -2.13 5.61 -88.39 -0.50 -2.63 16 11 H 0.10 1.39 8.04 -51.93 -0.42 0.97 16 12 C -0.16 -2.63 6.71 -89.23 -0.60 -3.23 16 13 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 14 C 0.15 3.04 7.03 -2.41 -0.02 3.02 16 15 N -0.59 -14.71 3.39 -168.77 -0.57 -15.28 16 16 C -0.23 -6.16 10.35 -15.06 -0.16 -6.31 16 17 H 0.08 2.03 7.85 -52.49 -0.41 1.61 16 18 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 19 N -0.92 -26.07 10.89 55.49 0.60 -25.47 16 20 Si 0.91 21.47 29.56 -169.99 -5.03 16.44 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 C 0.18 4.16 5.73 -2.35 -0.01 4.15 16 25 C -0.17 -2.89 6.92 -86.99 -0.60 -3.49 16 26 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 27 C -0.10 -0.73 4.71 -26.51 -0.12 -0.86 16 28 C -0.13 -0.91 6.03 -28.10 -0.17 -1.08 16 29 C 0.52 5.04 7.47 -11.87 -0.09 4.96 16 30 O -0.56 -7.51 15.95 5.56 0.09 -7.42 16 31 H 0.09 0.83 6.59 -51.93 -0.34 0.49 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.53 8.11 -51.93 -0.42 0.11 16 35 H 0.09 0.43 7.84 -51.93 -0.41 0.02 16 36 H 0.40 2.88 8.08 -40.82 -0.33 2.55 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.88 7.95 -51.93 -0.41 0.47 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 2.29 6.54 -51.93 -0.34 1.95 16 44 H 0.09 0.65 7.90 -51.93 -0.41 0.24 16 45 H 0.08 0.63 8.13 -51.93 -0.42 0.21 16 46 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 378.23 15.07 5.70 5.70 Total: -1.00 -33.66 378.23 -9.83 -43.49 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -7.70 Total: 0.44 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -2.10 Total: 1.89 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -0.88 Total: -53.29 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: 0.18 Total: -14.67 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.66 -9.83 -43.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979099310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.325 kcal (2) G-P(sol) polarization free energy of solvation -33.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds