Wall clock time and date at job start Tue Mar 31 2020 05:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.45752 * 117.94153 * 2 1 4 4 C 1.52925 * 110.48432 * 199.07259 * 3 2 1 5 5 H 1.09002 * 109.74063 * 69.07884 * 4 3 2 6 6 C 1.50697 * 109.60474 * 189.48677 * 4 3 2 7 7 O 1.21281 * 119.99472 * 119.18336 * 6 4 3 8 8 N 1.34771 * 120.00185 * 299.18813 * 6 4 3 9 9 C 1.46495 * 120.00127 * 180.02562 * 8 6 4 10 10 C 1.53003 * 109.47394 * 179.97438 * 9 8 6 11 11 H 1.09004 * 115.51089 * 330.41395 * 10 9 8 12 12 C 1.52993 * 117.44575 * 184.99889 * 10 9 8 13 13 H 1.09006 * 119.54158 * 5.75827 * 12 10 9 14 14 C 1.54385 * 118.12394 * 160.85266 * 12 10 9 15 15 N 1.48150 * 104.72124 * 89.15146 * 14 12 10 16 16 C 1.36928 * 127.83918 * 140.47057 * 15 14 12 17 17 H 1.08001 * 120.00117 * 344.48780 * 16 15 14 18 18 C 1.38812 * 120.00217 * 164.48880 * 16 15 14 19 19 N 1.31622 * 119.99678 * 350.60172 * 18 16 15 20 20 Si 1.86796 * 120.00304 * 170.60091 * 18 16 15 21 21 H 1.48496 * 109.47402 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47250 * 120.00005 * 20 18 16 23 23 H 1.48505 * 109.47256 * 239.99949 * 20 18 16 24 24 C 1.48257 * 104.26768 * 320.57134 * 15 14 12 25 25 C 1.54280 * 61.50227 * 253.31191 * 12 10 9 26 26 H 1.09004 * 121.81872 * 107.96240 * 25 12 10 27 27 C 1.53350 * 108.67122 * 309.24352 * 4 3 2 28 28 C 1.53074 * 108.42376 * 67.53403 * 27 4 3 29 29 C 1.33355 * 117.94563 * 179.97438 * 2 1 3 30 30 O 1.21278 * 118.24538 * 357.80733 * 29 2 1 31 31 H 1.09001 * 109.46872 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47471 * 300.00844 * 1 2 3 33 33 H 1.08999 * 109.47075 * 60.00777 * 1 2 3 34 34 H 1.08995 * 109.30465 * 78.76298 * 3 2 1 35 35 H 1.08997 * 109.30385 * 319.37676 * 3 2 1 36 36 H 0.96995 * 119.99951 * 359.97438 * 8 6 4 37 37 H 1.09001 * 109.47233 * 59.99643 * 9 8 6 38 38 H 1.08997 * 109.47165 * 299.99709 * 9 8 6 39 39 H 1.09006 * 110.40662 * 207.99280 * 14 12 10 40 40 H 1.09004 * 110.40656 * 330.30654 * 14 12 10 41 41 H 0.97000 * 120.00072 * 179.97438 * 19 18 16 42 42 H 1.08999 * 110.29878 * 280.64983 * 24 15 14 43 43 H 1.08990 * 110.43669 * 158.26860 * 24 15 14 44 44 H 1.09002 * 109.67434 * 187.26000 * 27 4 3 45 45 H 1.08995 * 109.67673 * 307.79834 * 27 4 3 46 46 H 1.08995 * 109.40394 * 71.22492 * 28 27 4 47 47 H 1.09004 * 109.39668 * 191.06002 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1480 1.2876 0.0000 4 6 3.5949 1.1260 -0.4681 5 1 3.6128 0.8738 -1.5284 6 6 4.3463 2.4125 -0.2416 7 8 5.3110 2.4299 0.4932 8 7 3.9463 3.5436 -0.8556 9 6 4.6771 4.7941 -0.6358 10 6 4.0220 5.9164 -1.4435 11 1 3.5277 5.6055 -2.3639 12 6 4.7110 7.2824 -1.4399 13 1 5.6796 7.3946 -0.9526 14 6 4.3554 8.2798 -2.5634 15 7 3.1972 9.0403 -2.0391 16 6 2.9417 10.3790 -2.1717 17 1 3.7279 11.0504 -2.4839 18 6 1.6723 10.8732 -1.9049 19 7 0.6711 10.0422 -1.7057 20 14 1.3849 12.7173 -1.8284 21 1 2.6626 13.4286 -2.0865 22 1 0.3863 13.1057 -2.8567 23 1 0.8770 13.0837 -0.4819 24 6 2.3796 8.0225 -1.3365 25 6 3.4083 7.1128 -0.6309 26 1 3.4080 7.0841 0.4587 27 6 4.2493 -0.0012 0.3399 28 6 3.5839 -1.3239 -0.0483 29 6 2.0900 -1.1781 0.0005 30 8 1.4159 -2.1854 0.0419 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8898 33 1 -0.3633 0.5137 -0.8900 34 1 2.1398 1.6999 1.0090 35 1 1.6271 1.9718 -0.6698 36 1 3.1749 3.5295 -1.4435 37 1 5.7114 4.6717 -0.9571 38 1 4.6534 5.0473 0.4240 39 1 5.1937 8.9493 -2.7567 40 1 4.0793 7.7455 -3.4726 41 1 -0.2159 10.3875 -1.5189 42 1 1.7929 7.4481 -2.0534 43 1 1.7272 8.4978 -0.6042 44 1 5.3143 -0.0455 0.1120 45 1 4.1087 0.1815 1.4052 46 1 3.8881 -1.5997 -1.0580 47 1 3.8931 -2.1030 0.6486 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979099310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:10 Heat of formation + Delta-G solvation = -35.620480 kcal Electronic energy + Delta-G solvation = -26742.738152 eV Core-core repulsion = 22926.110511 eV Total energy + Delta-G solvation = -3816.627640 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.82981 -40.69741 -40.02721 -37.39938 -36.33190 -35.01440 -34.93607 -32.72406 -31.23911 -28.95243 -28.65325 -28.11667 -26.61762 -25.51433 -23.81070 -22.74872 -21.85251 -21.07461 -20.69621 -19.74350 -18.83743 -18.45088 -17.71481 -17.35842 -16.97145 -16.81371 -16.51307 -16.27253 -15.86067 -15.42282 -15.23663 -15.07279 -14.75181 -14.59332 -14.36401 -14.33250 -13.92947 -13.63843 -13.30622 -13.17854 -13.15586 -12.88072 -12.85944 -12.74855 -12.72935 -12.35232 -12.21460 -11.95661 -11.93595 -11.88691 -11.74352 -11.07840 -10.87779 -10.76858 -10.63523 -10.49515 -9.98802 -9.80925 -8.89053 -7.91905 -5.27037 1.46494 1.47265 1.52315 1.56402 1.57785 1.96056 2.13441 2.48169 2.69169 3.27045 3.44740 3.53205 3.61297 3.65208 3.70476 3.75504 3.87858 4.16566 4.23358 4.27390 4.30994 4.35649 4.44689 4.47027 4.52674 4.58883 4.62800 4.71260 4.75152 4.76997 4.88338 4.96220 4.97087 5.02133 5.05062 5.18381 5.24319 5.33675 5.38619 5.46175 5.49880 5.56434 5.69144 6.19214 6.35121 6.54787 7.02516 7.07080 7.22199 7.69362 8.47500 9.21955 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.021458 B = 0.002238 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.569481 B =12510.585092 C =13557.242819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.603 5.603 3 C 0.122 3.878 4 C -0.115 4.115 5 H 0.133 0.867 6 C 0.526 3.474 7 O -0.574 6.574 8 N -0.713 5.713 9 C 0.162 3.838 10 C -0.108 4.108 11 H 0.115 0.885 12 C -0.156 4.156 13 H 0.122 0.878 14 C 0.146 3.854 15 N -0.622 5.622 16 C -0.239 4.239 17 H 0.079 0.921 18 C -0.062 4.062 19 N -0.945 5.945 20 Si 0.977 3.023 21 H -0.266 1.266 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.189 3.811 25 C -0.180 4.180 26 H 0.112 0.888 27 C -0.099 4.099 28 C -0.125 4.125 29 C 0.508 3.492 30 O -0.601 6.601 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.108 0.892 36 H 0.416 0.584 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.028 0.972 41 H 0.249 0.751 42 H 0.005 0.995 43 H 0.050 0.950 44 H 0.091 0.909 45 H 0.066 0.934 46 H 0.121 0.879 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.593 -20.509 1.643 21.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.335 5.335 3 C -0.001 4.001 4 C -0.137 4.137 5 H 0.151 0.849 6 C 0.312 3.688 7 O -0.453 6.453 8 N -0.365 5.365 9 C 0.039 3.961 10 C -0.127 4.127 11 H 0.133 0.867 12 C -0.176 4.176 13 H 0.140 0.860 14 C 0.021 3.979 15 N -0.347 5.347 16 C -0.368 4.368 17 H 0.096 0.904 18 C -0.256 4.256 19 N -0.593 5.593 20 Si 0.805 3.195 21 H -0.191 1.191 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.063 3.937 25 C -0.199 4.199 26 H 0.130 0.870 27 C -0.137 4.137 28 C -0.164 4.164 29 C 0.298 3.702 30 O -0.484 6.484 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.126 0.874 36 H 0.253 0.747 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.045 0.955 41 H 0.058 0.942 42 H 0.023 0.977 43 H 0.068 0.932 44 H 0.109 0.891 45 H 0.085 0.915 46 H 0.139 0.861 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.788 -20.747 2.181 21.649 hybrid contribution -0.933 1.314 -0.140 1.618 sum 4.855 -19.433 2.041 20.134 Atomic orbital electron populations 1.21896 0.78739 1.03986 1.03199 1.47232 1.08183 1.05973 1.72085 1.21433 0.90877 0.84483 1.03283 1.21623 0.94464 0.92871 1.04700 0.84896 1.20525 0.84087 0.85136 0.79004 1.90726 1.29551 1.86282 1.38747 1.45956 1.33561 1.07984 1.48971 1.20677 0.95277 0.81293 0.98902 1.23081 1.01648 0.87951 1.00043 0.86739 1.23751 0.97094 0.95992 1.00785 0.85973 1.21317 0.90274 0.92515 0.93757 1.45564 1.23804 1.04222 1.61085 1.19389 0.94593 0.82680 1.40117 0.90371 1.25693 0.95044 1.02217 1.02650 1.70086 0.99935 1.34160 1.55137 0.85043 0.77827 0.79799 0.76829 1.19052 1.21829 1.21815 1.20812 0.91434 0.87768 0.93664 1.24720 0.96971 1.00608 0.97650 0.86991 1.21443 1.01045 0.91178 1.00022 1.21673 0.88523 0.99769 1.06442 1.20797 0.92187 0.82469 0.74746 1.90691 1.67517 1.37236 1.52908 0.90857 0.90929 0.89960 0.91021 0.87354 0.74697 0.90523 0.91819 0.92748 0.95454 0.94154 0.97708 0.93185 0.89083 0.91472 0.86072 0.87236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.86 10.48 127.77 1.34 2.20 16 2 N -0.60 -8.77 3.21 -851.61 -2.73 -11.50 16 3 C 0.12 1.26 5.57 86.50 0.48 1.74 16 4 C -0.12 -1.22 2.60 -11.45 -0.03 -1.25 16 5 H 0.13 0.84 8.12 -2.39 -0.02 0.82 16 6 C 0.53 8.79 7.13 87.66 0.63 9.42 16 7 O -0.57 -14.48 15.90 -3.03 -0.05 -14.53 16 8 N -0.71 -10.69 5.47 -463.08 -2.53 -13.22 16 9 C 0.16 3.21 5.96 86.38 0.51 3.73 16 10 C -0.11 -2.61 5.61 -9.35 -0.05 -2.66 16 11 H 0.11 2.63 8.04 -2.38 -0.02 2.61 16 12 C -0.16 -4.76 6.71 -9.89 -0.07 -4.83 16 13 H 0.12 3.29 8.14 -2.38 -0.02 3.27 16 14 C 0.15 5.68 7.03 86.53 0.61 6.28 16 15 N -0.62 -31.02 3.39 -687.87 -2.33 -33.35 16 16 C -0.24 -13.13 10.35 84.03 0.87 -12.26 16 17 H 0.08 4.14 7.85 -2.91 -0.02 4.12 16 18 C -0.06 -3.47 5.40 84.86 0.46 -3.01 16 19 N -0.95 -55.36 10.89 21.65 0.24 -55.12 16 20 Si 0.98 44.68 29.56 68.60 2.03 46.70 16 21 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 22 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 23 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 24 C 0.19 8.71 5.73 86.51 0.50 9.21 16 25 C -0.18 -6.03 6.92 -8.44 -0.06 -6.09 16 26 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 27 C -0.10 -1.18 4.71 30.74 0.14 -1.04 16 28 C -0.12 -1.47 6.03 29.71 0.18 -1.29 16 29 C 0.51 9.35 7.47 87.71 0.66 10.01 16 30 O -0.60 -16.23 15.95 -3.02 -0.05 -16.28 16 31 H 0.07 1.31 6.59 -2.39 -0.02 1.30 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 0.84 8.11 -2.39 -0.02 0.82 16 35 H 0.11 0.67 7.84 -2.39 -0.02 0.66 16 36 H 0.42 4.21 8.08 -92.71 -0.75 3.46 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.06 1.42 7.95 -2.39 -0.02 1.40 16 39 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 40 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.25 14.13 8.31 -92.71 -0.77 13.35 16 42 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.05 2.68 6.54 -2.39 -0.02 2.66 16 44 H 0.09 1.12 7.90 -2.39 -0.02 1.10 16 45 H 0.07 0.98 8.13 -2.39 -0.02 0.96 16 46 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -75.42 378.23 0.96 -74.46 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.22 Total: 12.68 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 6.16 Total: 10.15 kcal Atomic # 7 Polarization: -105.84 SS G_CDS: -7.36 Total: -113.20 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.10 Total: -30.81 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -75.42 0.96 -74.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979099310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.844 kcal (2) G-P(sol) polarization free energy of solvation -75.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds