Wall clock time and date at job start Tue Mar 31 2020 05:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.47028 * 2 1 4 4 C 1.35528 * 125.67324 * 260.57420 * 3 2 1 5 5 C 1.35458 * 108.87001 * 179.86728 * 4 3 2 6 6 C 1.39832 * 107.86171 * 0.39289 * 5 4 3 7 7 C 1.37646 * 125.67956 * 80.88237 * 3 2 1 8 8 C 1.46680 * 126.23229 * 359.94689 * 7 3 2 9 9 O 1.21696 * 120.00070 * 5.31864 * 8 7 3 10 10 N 1.34777 * 119.99999 * 185.32583 * 8 7 3 11 11 C 1.46502 * 120.00025 * 184.87462 * 10 8 7 12 12 C 1.53002 * 109.46922 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.51367 * 60.00291 * 12 11 10 14 14 C 1.53295 * 109.50819 * 180.09831 * 12 11 10 15 15 N 1.47161 * 108.38125 * 172.22474 * 14 12 11 16 16 C 1.36928 * 120.97771 * 129.44718 * 15 14 12 17 17 H 1.08006 * 119.99533 * 210.37329 * 16 15 14 18 18 C 1.38810 * 120.00462 * 30.37782 * 16 15 14 19 19 N 1.31617 * 119.99929 * 10.01438 * 18 16 15 20 20 Si 1.86802 * 119.99986 * 190.01251 * 18 16 15 21 21 H 1.48498 * 109.47310 * 90.00051 * 20 18 16 22 22 H 1.48499 * 109.47150 * 209.99923 * 20 18 16 23 23 H 1.48499 * 109.47173 * 329.99945 * 20 18 16 24 24 C 1.47147 * 118.03330 * 309.46807 * 15 14 12 25 25 C 1.53292 * 108.38748 * 50.53515 * 24 15 14 26 26 O 1.42958 * 109.51046 * 299.89564 * 12 11 10 27 27 H 1.09005 * 109.46516 * 299.99798 * 1 2 3 28 28 H 1.08990 * 109.47146 * 59.99963 * 1 2 3 29 29 H 1.08998 * 109.46860 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46969 * 240.00318 * 2 1 3 31 31 H 1.08999 * 109.47052 * 120.00233 * 2 1 3 32 32 H 1.08003 * 125.56870 * 0.02562 * 4 3 2 33 33 H 1.08000 * 126.06993 * 180.12446 * 5 4 3 34 34 H 1.07999 * 126.45667 * 179.75712 * 6 5 4 35 35 H 0.97000 * 119.99831 * 4.87245 * 10 8 7 36 36 H 1.09003 * 109.46617 * 299.99947 * 11 10 8 37 37 H 1.08995 * 109.47335 * 59.99871 * 11 10 8 38 38 H 1.08999 * 109.47680 * 59.99364 * 13 12 11 39 39 H 1.08998 * 109.47402 * 179.97438 * 13 12 11 40 40 H 1.09009 * 109.47007 * 299.99716 * 13 12 11 41 41 H 1.08996 * 109.68919 * 291.94820 * 14 12 11 42 42 H 1.08998 * 109.68241 * 52.46754 * 14 12 11 43 43 H 0.97003 * 120.00062 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.68043 * 170.26321 * 24 15 14 45 45 H 1.09002 * 109.68330 * 290.80875 * 24 15 14 46 46 H 1.08998 * 109.51465 * 67.62169 * 25 24 15 47 47 H 1.09003 * 109.50989 * 187.72280 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.4518 2.0663 -1.0861 5 6 2.8208 3.3113 -0.7003 6 6 2.6202 3.4096 0.6801 7 6 2.1189 2.1972 1.1040 8 6 1.7578 1.8419 2.4805 9 8 1.4145 0.7047 2.7453 10 7 1.8060 2.7747 3.4520 11 6 1.5493 2.3967 4.8440 12 6 1.6648 3.6330 5.7378 13 6 0.6398 4.6799 5.2970 14 6 1.3988 3.2380 7.1949 15 7 1.6982 4.3962 8.0519 16 6 0.7968 4.8346 8.9847 17 1 0.7589 5.8812 9.2488 18 6 -0.0682 3.9340 9.5909 19 7 0.1042 2.6402 9.4218 20 14 -1.4771 4.5584 10.6467 21 1 -2.6793 4.7608 9.7988 22 1 -1.7806 3.5630 11.7062 23 1 -1.0915 5.8477 11.2746 24 6 2.9948 5.0695 7.8763 25 6 3.1830 5.3753 6.3860 26 8 2.9816 4.1789 5.6299 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.4936 1.6832 -2.0950 33 1 3.2060 4.0884 -1.3438 34 1 2.8204 4.2726 1.2978 35 1 2.0106 3.6965 3.2296 36 1 0.5454 1.9804 4.9281 37 1 2.2794 1.6510 5.1585 38 1 -0.3640 4.2637 5.3811 39 1 0.7223 5.5602 5.9345 40 1 0.8306 4.9617 4.2614 41 1 0.3530 2.9543 7.3134 42 1 2.0397 2.4008 7.4712 43 1 -0.5005 2.0109 9.8451 44 1 3.0060 5.9987 8.4460 45 1 3.7970 4.4172 8.2214 46 1 2.4590 6.1282 6.0745 47 1 4.1928 5.7488 6.2157 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108400521.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:09 Heat of formation + Delta-G solvation = -6.899249 kcal Electronic energy + Delta-G solvation = -28109.464255 eV Core-core repulsion = 24294.082060 eV Total energy + Delta-G solvation = -3815.382194 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.45918 -39.44806 -38.42004 -35.06726 -34.41568 -34.04416 -31.82770 -31.25884 -29.46714 -29.36208 -27.93007 -26.40018 -25.51227 -23.72349 -23.22038 -22.38753 -21.15904 -20.49412 -19.56186 -18.63781 -17.89656 -16.99057 -16.02066 -15.84161 -15.46545 -15.30753 -14.97391 -14.59426 -14.33309 -14.29284 -13.97365 -13.85013 -13.71069 -13.49143 -13.04580 -12.79983 -12.59974 -12.47255 -12.39098 -12.33597 -12.06196 -11.85601 -11.57818 -11.35001 -11.18465 -10.97438 -10.84694 -10.66852 -10.29680 -10.24508 -10.05093 -9.84528 -9.52777 -9.01985 -8.86425 -8.83615 -8.56450 -8.24888 -6.68763 -5.84678 -3.34105 1.48866 2.59186 2.67839 3.32945 3.39762 3.41237 3.46250 3.52173 4.26301 4.42338 4.54289 4.81410 4.88556 4.90062 5.11654 5.16741 5.25990 5.30764 5.34140 5.48267 5.50962 5.54265 5.65656 5.70731 5.93507 5.94862 5.95515 5.98001 6.02836 6.08175 6.13486 6.15979 6.32715 6.47710 6.57515 6.65345 6.73551 6.78104 6.83987 6.92220 7.08979 7.13589 7.49343 7.70048 7.71401 7.89648 8.35162 8.36886 9.11483 9.72432 10.31641 11.22836 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.020202 B = 0.003081 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.692795 B = 9086.601456 C = 9905.291364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.097 3.903 3 N -0.408 5.408 4 C 0.009 3.991 5 C -0.209 4.209 6 C -0.143 4.143 7 C -0.044 4.044 8 C 0.582 3.418 9 O -0.554 6.554 10 N -0.704 5.704 11 C 0.143 3.857 12 C 0.077 3.923 13 C -0.162 4.162 14 C 0.162 3.838 15 N -0.591 5.591 16 C -0.255 4.255 17 H 0.066 0.934 18 C 0.006 3.994 19 N -0.903 5.903 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.109 3.891 25 C 0.046 3.954 26 O -0.384 6.384 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.165 0.835 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.404 0.596 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.042 0.958 41 H 0.096 0.904 42 H 0.029 0.971 43 H 0.256 0.744 44 H 0.061 0.939 45 H 0.026 0.974 46 H 0.048 0.952 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.734 0.038 -20.001 20.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.081 5.081 4 C -0.127 4.127 5 C -0.233 4.233 6 C -0.170 4.170 7 C -0.158 4.158 8 C 0.370 3.630 9 O -0.434 6.434 10 N -0.355 5.355 11 C 0.019 3.981 12 C 0.036 3.964 13 C -0.219 4.219 14 C 0.035 3.965 15 N -0.314 5.314 16 C -0.384 4.384 17 H 0.084 0.916 18 C -0.193 4.193 19 N -0.547 5.547 20 Si 0.735 3.265 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.204 1.204 24 C -0.017 4.017 25 C -0.032 4.032 26 O -0.303 6.303 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.123 0.877 32 H 0.183 0.817 33 H 0.158 0.842 34 H 0.161 0.839 35 H 0.240 0.760 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.061 0.939 41 H 0.115 0.885 42 H 0.047 0.953 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.043 0.957 46 H 0.066 0.934 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.394 -1.371 -19.745 20.082 hybrid contribution -0.745 0.856 0.609 1.288 sum 2.649 -0.516 -19.136 19.326 Atomic orbital electron populations 1.22063 0.94014 1.03044 1.02908 1.22019 0.96069 0.79618 1.04686 1.44075 1.46284 1.11617 1.06138 1.21971 1.05223 0.93574 0.91892 1.20794 1.09892 0.97175 0.95446 1.21377 1.03785 0.96140 0.95658 1.20157 1.14358 0.92767 0.88511 1.17004 0.77649 0.85028 0.83344 1.90780 1.48919 1.20210 1.83473 1.45645 1.70876 1.11786 1.07149 1.21385 1.02105 0.96448 0.78122 1.22578 0.83093 0.92183 0.98527 1.22206 0.99338 1.00733 0.99649 1.21288 1.02636 0.89208 0.83362 1.43943 1.13236 1.34197 1.40057 1.19146 1.11957 0.92039 1.15263 0.91586 1.25177 1.00736 0.95223 0.98162 1.69952 1.38070 1.00267 1.46440 0.86243 0.82320 0.77921 0.79976 1.21339 1.21601 1.20405 1.21606 0.89475 0.97067 0.93567 1.23037 0.99880 0.86874 0.93421 1.87815 1.30720 1.42044 1.69757 0.91253 0.92535 0.90760 0.89531 0.87710 0.81745 0.84199 0.83937 0.76000 0.89919 0.90793 0.91891 0.90837 0.93902 0.88550 0.95254 0.93393 0.92065 0.95651 0.93404 0.90173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 10.16 37.16 0.38 -1.20 16 2 C 0.10 0.97 6.11 -4.04 -0.02 0.95 16 3 N -0.41 -4.78 2.76 -112.87 -0.31 -5.09 16 4 C 0.01 0.08 11.36 -16.91 -0.19 -0.11 16 5 C -0.21 -2.14 10.81 -39.98 -0.43 -2.57 16 6 C -0.14 -1.70 10.35 -39.12 -0.40 -2.11 16 7 C -0.04 -0.60 6.88 -81.98 -0.56 -1.17 16 8 C 0.58 9.19 7.77 -12.85 -0.10 9.09 16 9 O -0.55 -10.03 14.23 5.19 0.07 -9.95 16 10 N -0.70 -10.66 5.13 -61.62 -0.32 -10.97 16 11 C 0.14 2.48 4.82 -4.04 -0.02 2.46 16 12 C 0.08 1.44 0.76 -90.47 -0.07 1.37 16 13 C -0.16 -2.78 7.92 37.16 0.29 -2.48 16 14 C 0.16 3.75 4.05 -3.53 -0.01 3.74 16 15 N -0.59 -14.32 2.56 -171.83 -0.44 -14.76 16 16 C -0.25 -6.73 9.64 -15.06 -0.15 -6.88 16 17 H 0.07 1.71 7.85 -52.48 -0.41 1.30 16 18 C 0.01 0.16 5.08 -17.43 -0.09 0.08 16 19 N -0.90 -25.57 11.03 55.49 0.61 -24.96 16 20 Si 0.91 21.21 29.57 -169.99 -5.03 16.18 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 C 0.11 2.23 6.74 -3.54 -0.02 2.21 16 25 C 0.05 0.79 6.60 37.31 0.25 1.03 16 26 O -0.38 -7.06 9.98 -35.23 -0.35 -7.42 16 27 H 0.07 0.87 7.56 -51.93 -0.39 0.48 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.60 8.11 -51.93 -0.42 0.18 16 31 H 0.10 1.25 6.75 -51.93 -0.35 0.90 16 32 H 0.17 1.03 8.06 -52.48 -0.42 0.61 16 33 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.14 1.47 7.49 -52.49 -0.39 1.08 16 35 H 0.40 5.50 6.14 -40.82 -0.25 5.25 16 36 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 1.37 6.12 -51.93 -0.32 1.05 16 40 H 0.04 0.62 6.87 -51.92 -0.36 0.26 16 41 H 0.10 2.47 6.23 -51.93 -0.32 2.15 16 42 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.06 1.19 7.96 -51.93 -0.41 0.77 16 45 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.05 0.80 6.26 -51.93 -0.32 0.47 16 47 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 372.50 15.07 5.61 5.61 Total: -1.00 -31.09 372.50 -8.62 -39.72 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -7.32 Total: 7.22 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -1.16 Total: 4.41 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.46 Total: -55.78 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.28 Total: -17.37 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.09 -8.62 -39.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108400521.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.818 kcal (2) G-P(sol) polarization free energy of solvation -31.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds