Wall clock time and date at job start Tue Mar 31 2020 05:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 O 1.21283 * 120.00262 * 240.00295 * 4 2 1 6 6 N 1.34777 * 119.99928 * 59.72201 * 4 2 1 7 7 C 1.46499 * 120.00199 * 180.27479 * 6 4 2 8 8 H 1.09005 * 115.51561 * 9.58575 * 7 6 4 9 9 C 1.52996 * 117.44813 * 224.23134 * 7 6 4 10 10 H 1.08999 * 119.52645 * 4.09169 * 9 7 6 11 11 C 1.54379 * 118.13007 * 160.68430 * 9 7 6 12 12 N 1.48563 * 104.59266 * 87.23125 * 11 9 7 13 13 C 1.46904 * 110.99755 * 200.96142 * 12 11 9 14 14 C 1.50702 * 109.47055 * 170.00372 * 13 12 11 15 15 O 1.21290 * 119.99762 * 359.97438 * 14 13 12 16 16 N 1.34775 * 119.99872 * 180.02562 * 14 13 12 17 17 C 1.37097 * 119.99853 * 179.97438 * 16 14 13 18 18 H 1.08001 * 120.00099 * 359.97438 * 17 16 14 19 19 C 1.38954 * 120.00104 * 179.97438 * 17 16 14 20 20 N 1.31414 * 119.99994 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99918 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47142 * 60.00239 * 21 19 17 23 23 H 1.48503 * 109.46965 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47287 * 300.00016 * 21 19 17 25 25 C 1.48559 * 104.22144 * 320.51593 * 12 11 9 26 26 C 1.53001 * 117.44740 * 155.00159 * 7 6 4 27 27 H 1.09003 * 119.51917 * 355.91380 * 26 7 6 28 28 C 1.52996 * 109.47166 * 119.99964 * 2 1 3 29 29 C 1.53002 * 117.50108 * 248.62088 * 28 2 1 30 30 C 1.53003 * 60.00175 * 252.50924 * 29 28 2 31 31 H 1.08996 * 109.46783 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 33 33 H 1.09001 * 109.46739 * 59.99706 * 1 2 3 34 34 H 0.97000 * 120.00317 * 0.28382 * 6 4 2 35 35 H 1.09003 * 110.41171 * 206.00925 * 11 9 7 36 36 H 1.09000 * 110.41104 * 328.45284 * 11 9 7 37 37 H 1.09004 * 109.46601 * 289.99913 * 13 12 11 38 38 H 1.08992 * 109.47512 * 49.99832 * 13 12 11 39 39 H 0.96993 * 120.00457 * 359.97438 * 16 14 13 40 40 H 0.96995 * 120.00437 * 180.02562 * 20 19 17 41 41 H 1.09003 * 110.41195 * 280.70359 * 25 12 11 42 42 H 1.09008 * 110.40788 * 158.26378 * 25 12 11 43 43 H 1.09000 * 115.55072 * 34.33153 * 28 2 1 44 44 H 1.08992 * 117.49312 * 359.97438 * 29 28 2 45 45 H 1.08998 * 117.49793 * 145.02044 * 29 28 2 46 46 H 1.08993 * 117.50004 * 252.51206 * 30 29 28 47 47 H 1.08999 * 117.49653 * 107.48765 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1193 6 7 1.7022 -0.2532 -2.4546 7 6 2.1855 -0.9472 -3.6507 8 1 2.6659 -1.9095 -3.4734 9 6 2.7311 -0.0876 -4.7927 10 1 2.8082 0.9919 -4.6630 11 6 3.6427 -0.7623 -5.8402 12 7 2.7055 -1.3100 -6.8546 13 6 3.3407 -2.3809 -7.6342 14 6 2.3005 -3.0745 -8.4755 15 8 1.1437 -2.7127 -8.4298 16 7 2.6554 -4.0975 -9.2779 17 6 1.7089 -4.7289 -10.0429 18 1 0.6789 -4.4067 -10.0022 19 6 2.0749 -5.7833 -10.8706 20 7 3.3283 -6.1750 -10.9205 21 14 0.7851 -6.6440 -11.9124 22 1 0.1597 -5.6635 -12.8357 23 1 1.4272 -7.7268 -12.7002 24 1 -0.2568 -7.2263 -11.0289 25 6 1.5690 -1.8357 -6.0553 26 6 1.3670 -0.7937 -4.9343 27 1 0.4285 -0.2398 -4.9098 28 6 2.0400 -0.7212 1.2492 29 6 2.7419 0.1226 2.3151 30 6 3.5551 -0.8281 1.4343 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.1446 0.5355 -2.5436 35 1 4.3079 -0.0280 -6.2945 36 1 4.2186 -1.5661 -5.3816 37 1 4.1061 -1.9535 -8.2821 38 1 3.7990 -3.1009 -6.9564 39 1 3.5803 -4.3872 -9.3142 40 1 3.5839 -6.9108 -11.4986 41 1 1.8205 -2.8075 -5.6303 42 1 0.6729 -1.9097 -6.6716 43 1 1.4311 -1.5585 1.5902 44 1 2.8407 1.1915 2.1261 45 1 2.5947 -0.1593 3.3577 46 1 3.9427 -1.7355 1.8973 47 1 4.1884 -0.3845 0.6660 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114103421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:39 Heat of formation + Delta-G solvation = -6.203013 kcal Electronic energy + Delta-G solvation = -26496.514615 eV Core-core repulsion = 22681.162612 eV Total energy + Delta-G solvation = -3815.352003 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.62538 -39.65939 -38.04591 -37.22949 -35.09036 -33.93974 -33.25596 -31.81349 -31.21668 -28.20599 -27.55903 -25.32620 -24.60590 -22.89848 -22.57642 -21.49914 -20.98850 -20.25454 -19.92018 -19.14199 -17.83618 -17.35049 -16.96443 -15.99567 -15.78066 -15.34369 -15.00616 -14.95854 -14.64523 -14.51233 -14.23232 -13.76384 -13.48703 -13.46126 -13.02268 -12.88122 -12.78182 -12.39891 -12.18406 -12.02706 -11.84359 -11.81045 -11.54912 -11.46563 -11.25561 -11.21418 -10.96982 -10.81949 -10.72076 -10.43764 -10.38494 -10.22503 -10.04042 -9.82293 -9.49119 -8.89237 -8.40285 -8.03609 -7.92898 -6.42177 -3.83170 2.35995 2.69393 3.19852 3.25816 3.30005 3.56976 3.64595 3.88456 4.07040 4.15119 4.25641 4.38239 4.49298 4.65359 4.66007 4.73671 4.82258 4.85894 4.88291 5.03794 5.09398 5.21180 5.25111 5.30527 5.34808 5.36004 5.45634 5.60694 5.64901 5.69136 5.72983 5.77702 5.79622 5.83543 5.93464 5.94387 6.07238 6.14591 6.25754 6.35765 6.62796 7.13639 7.24109 7.25352 7.54596 8.00266 8.04889 8.60523 9.16902 9.52820 10.04256 10.75368 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.024725 B = 0.002047 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.177293 B =13672.434771 C =13798.194819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 H 0.097 0.903 4 C 0.519 3.481 5 O -0.526 6.526 6 N -0.701 5.701 7 C 0.104 3.896 8 H 0.132 0.868 9 C -0.172 4.172 10 H 0.116 0.884 11 C 0.060 3.940 12 N -0.487 5.487 13 C 0.033 3.967 14 C 0.442 3.558 15 O -0.582 6.582 16 N -0.561 5.561 17 C -0.300 4.300 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.901 5.901 21 Si 0.932 3.068 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.274 1.274 25 C 0.066 3.934 26 C -0.162 4.162 27 H 0.117 0.883 28 C -0.137 4.137 29 C -0.183 4.183 30 C -0.156 4.156 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.401 0.599 35 H 0.086 0.914 36 H 0.045 0.955 37 H 0.092 0.908 38 H 0.050 0.950 39 H 0.393 0.607 40 H 0.272 0.728 41 H 0.039 0.961 42 H 0.122 0.878 43 H 0.108 0.892 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.094 0.906 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.358 14.403 22.473 26.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.100 4.100 3 H 0.115 0.885 4 C 0.305 3.695 5 O -0.401 6.401 6 N -0.350 5.350 7 C -0.002 4.002 8 H 0.150 0.850 9 C -0.193 4.193 10 H 0.134 0.866 11 C -0.068 4.068 12 N -0.211 5.211 13 C -0.098 4.098 14 C 0.228 3.772 15 O -0.467 6.467 16 N -0.197 5.197 17 C -0.430 4.430 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.542 5.542 21 Si 0.759 3.241 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.061 4.061 26 C -0.183 4.183 27 H 0.135 0.865 28 C -0.155 4.155 29 C -0.220 4.220 30 C -0.193 4.193 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.235 0.765 35 H 0.104 0.896 36 H 0.064 0.936 37 H 0.110 0.890 38 H 0.068 0.932 39 H 0.226 0.774 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.140 0.860 43 H 0.126 0.874 44 H 0.111 0.889 45 H 0.113 0.887 46 H 0.113 0.887 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.694 14.143 22.069 26.221 hybrid contribution 0.087 -0.804 -0.194 0.831 sum -0.607 13.340 21.875 25.629 Atomic orbital electron populations 1.21760 0.92314 1.03130 1.02765 1.20899 0.97652 0.99870 0.91604 0.88503 1.20657 0.79933 0.84716 0.84145 1.90721 1.37073 1.25784 1.86508 1.45343 1.53293 1.31640 1.04736 1.21813 1.00762 0.97432 0.80199 0.85019 1.23898 0.97182 0.99042 0.99171 0.86624 1.22673 0.94470 0.98588 0.91081 1.65415 1.06013 1.29654 1.20023 1.22102 0.97220 0.93115 0.97384 1.19680 0.89352 0.83458 0.84760 1.90441 1.19971 1.66975 1.69270 1.41839 1.11390 1.28876 1.37574 1.19653 0.92185 1.12238 1.18879 0.87916 1.25277 0.97029 0.97397 0.98236 1.69603 1.16194 1.28718 1.39675 0.85906 0.80009 0.78678 0.79553 1.19872 1.20976 1.19912 1.22849 0.97991 0.93433 0.91831 1.24066 0.95759 1.02448 0.95977 0.86494 1.21943 0.96318 1.01607 0.95676 1.23095 1.05118 0.97493 0.96317 1.22793 0.93428 1.01144 1.01928 0.91756 0.91115 0.91972 0.76493 0.89575 0.93647 0.88971 0.93176 0.77412 0.91780 0.94233 0.85975 0.87425 0.88914 0.88724 0.88750 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.07 37.16 0.34 -0.46 16 2 C -0.08 -0.57 2.88 -91.77 -0.26 -0.84 16 3 H 0.10 0.54 7.90 -51.93 -0.41 0.13 16 4 C 0.52 5.51 7.03 -10.98 -0.08 5.44 16 5 O -0.53 -7.74 14.65 5.55 0.08 -7.66 16 6 N -0.70 -6.58 5.45 -53.81 -0.29 -6.87 16 7 C 0.10 1.24 5.97 -67.93 -0.41 0.84 16 8 H 0.13 1.88 7.40 -51.93 -0.38 1.49 16 9 C -0.17 -2.02 7.05 -89.24 -0.63 -2.65 16 10 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 11 C 0.06 0.80 6.30 -2.18 -0.01 0.79 16 12 N -0.49 -8.29 5.34 -231.40 -1.23 -9.53 16 13 C 0.03 0.61 5.55 -4.97 -0.03 0.58 16 14 C 0.44 10.43 7.50 -10.99 -0.08 10.35 16 15 O -0.58 -15.38 13.24 5.55 0.07 -15.30 16 16 N -0.56 -14.25 5.29 -10.96 -0.06 -14.31 16 17 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 18 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 20 N -0.90 -24.58 13.05 55.50 0.72 -23.86 16 21 Si 0.93 21.10 29.55 -169.99 -5.02 16.07 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 25 C 0.07 1.13 5.11 -2.19 -0.01 1.11 16 26 C -0.16 -2.09 7.05 -89.24 -0.63 -2.72 16 27 H 0.12 1.35 8.14 -51.93 -0.42 0.92 16 28 C -0.14 -1.10 4.73 -90.62 -0.43 -1.53 16 29 C -0.18 -1.19 10.18 -26.73 -0.27 -1.47 16 30 C -0.16 -1.36 8.97 -26.73 -0.24 -1.60 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.28 7.55 -51.93 -0.39 -0.11 16 34 H 0.40 2.62 8.24 -40.82 -0.34 2.29 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.05 0.60 7.82 -51.93 -0.41 0.19 16 37 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.05 0.85 7.88 -51.93 -0.41 0.44 16 39 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 40 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.04 0.70 8.00 -51.93 -0.42 0.28 16 42 H 0.12 2.46 6.05 -51.92 -0.31 2.14 16 43 H 0.11 0.89 8.11 -51.93 -0.42 0.47 16 44 H 0.09 0.51 8.05 -51.93 -0.42 0.10 16 45 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.09 0.89 8.10 -51.93 -0.42 0.47 16 LS Contribution 384.04 15.07 5.79 5.79 Total: -1.00 -32.49 384.04 -10.47 -42.96 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -7.54 Total: 12.86 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -2.98 Total: -0.15 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.86 Total: -54.57 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: 0.15 Total: -22.96 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.49 -10.47 -42.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114103421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.754 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds