Wall clock time and date at job start Tue Mar 31 2020 05:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21281 * 119.99849 * 2 1 4 4 N 1.34771 * 120.00227 * 180.02562 * 2 1 3 5 5 C 1.48146 * 127.84036 * 359.97438 * 4 2 1 6 6 C 1.56046 * 104.85721 * 219.49733 * 5 4 2 7 7 H 1.08995 * 112.25046 * 215.97026 * 6 5 4 8 8 C 1.54371 * 104.12393 * 336.25983 * 6 5 4 9 9 H 1.09000 * 111.11734 * 239.32201 * 8 6 5 10 10 C 1.48137 * 127.83957 * 179.97438 * 4 2 1 11 11 C 1.53135 * 108.72384 * 116.80791 * 8 6 5 12 12 H 1.08998 * 109.62713 * 178.44056 * 11 8 6 13 13 C 1.53208 * 109.18711 * 298.55509 * 11 8 6 14 14 C 1.53163 * 108.90971 * 61.44684 * 13 11 8 15 15 C 1.53016 * 109.14468 * 92.40977 * 6 5 4 16 16 H 1.09001 * 109.13971 * 67.20121 * 15 6 5 17 17 N 1.46699 * 109.73001 * 187.05184 * 15 6 5 18 18 C 1.46892 * 111.00165 * 295.73725 * 17 15 6 19 19 C 1.50695 * 109.47369 * 170.00007 * 18 17 15 20 20 O 1.21297 * 119.99943 * 0.02562 * 19 18 17 21 21 N 1.34779 * 120.00454 * 179.97438 * 19 18 17 22 22 C 1.37099 * 120.00130 * 180.02562 * 21 19 18 23 23 H 1.07998 * 120.00049 * 359.97438 * 22 21 19 24 24 C 1.38949 * 119.99753 * 180.02562 * 22 21 19 25 25 N 1.31406 * 120.00069 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99709 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47297 * 269.99702 * 26 24 22 28 28 H 1.48503 * 109.47261 * 149.99882 * 26 24 22 29 29 H 1.48500 * 109.47454 * 29.99875 * 26 24 22 30 30 C 1.46723 * 111.75426 * 60.24690 * 17 15 6 31 31 H 1.09008 * 109.46704 * 239.99802 * 1 2 3 32 32 H 1.08998 * 109.47402 * 359.97438 * 1 2 3 33 33 H 1.08995 * 109.47436 * 119.99718 * 1 2 3 34 34 H 1.08999 * 110.40913 * 338.50571 * 5 4 2 35 35 H 1.08997 * 110.41634 * 100.83271 * 5 4 2 36 36 H 1.09001 * 110.40013 * 21.72108 * 10 4 2 37 37 H 1.09008 * 110.49606 * 259.37144 * 10 4 2 38 38 H 1.09003 * 109.56050 * 301.62307 * 13 11 8 39 39 H 1.08995 * 109.65401 * 181.33490 * 13 11 8 40 40 H 1.09003 * 109.52109 * 239.83282 * 14 13 11 41 41 H 1.09001 * 109.51825 * 119.65283 * 14 13 11 42 42 H 1.08998 * 109.47455 * 49.99951 * 18 17 15 43 43 H 1.09007 * 109.47046 * 290.00411 * 18 17 15 44 44 H 0.97006 * 119.99547 * 0.02562 * 21 19 18 45 45 H 0.97001 * 120.00308 * 0.02562 * 25 24 22 46 46 H 1.08995 * 109.42174 * 120.19206 * 30 17 15 47 47 H 1.09002 * 109.41540 * 239.98892 * 30 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.6222 -2.5392 -0.0006 6 6 2.5495 -3.3489 0.9582 7 1 2.6964 -4.3750 0.6212 8 6 3.8790 -2.5644 0.9478 9 1 4.7012 -3.1896 0.5994 10 6 3.6484 -1.3691 -0.0011 11 6 4.1493 -2.0366 2.3597 12 1 5.0997 -1.5031 2.3754 13 6 3.0188 -1.0863 2.7670 14 6 1.6980 -1.8617 2.7773 15 6 1.9641 -3.3130 2.3715 16 1 1.0273 -3.8700 2.3845 17 7 2.9074 -3.9246 3.3139 18 6 3.1001 -5.3499 3.0155 19 6 4.2464 -5.8843 3.8350 20 8 4.8437 -5.1500 4.5935 21 7 4.6072 -7.1783 3.7260 22 6 5.6497 -7.6645 4.4719 23 1 6.1820 -7.0105 5.1466 24 6 6.0219 -8.9984 4.3591 25 7 5.3745 -9.7940 3.5377 26 14 7.4428 -9.6606 5.3749 27 1 8.7099 -9.5008 4.6171 28 1 7.2167 -11.0997 5.6633 29 1 7.5315 -8.9079 6.6519 30 6 4.1909 -3.2140 3.3370 31 1 -0.3633 -0.5139 0.8901 32 1 -0.3634 1.0276 0.0005 33 1 -0.3634 -0.5138 -0.8899 34 1 0.5986 -2.5328 0.3741 35 1 1.6562 -2.9635 -1.0040 36 1 4.1544 -0.4808 0.3770 37 1 4.0005 -1.6075 -1.0049 38 1 2.9553 -0.2667 2.0512 39 1 3.2158 -0.6875 3.7621 40 1 1.0034 -1.4074 2.0706 41 1 1.2686 -1.8363 3.7788 42 1 3.3232 -5.4724 1.9557 43 1 2.1909 -5.8988 3.2612 44 1 4.1292 -7.7656 3.1196 45 1 4.6369 -9.4500 3.0099 46 1 4.3814 -2.8425 4.3438 47 1 4.9888 -3.8976 3.0471 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489085321.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:25 Heat of formation + Delta-G solvation = -45.328443 kcal Electronic energy + Delta-G solvation = -29114.627414 eV Core-core repulsion = 25297.578805 eV Total energy + Delta-G solvation = -3817.048609 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.91400 -39.36153 -38.28387 -36.20200 -34.41882 -33.36748 -32.01051 -31.51694 -31.13364 -29.67088 -27.87541 -27.04676 -24.71907 -24.25521 -22.82720 -21.74116 -21.43939 -19.77835 -19.58140 -17.96055 -17.44840 -17.29913 -16.80832 -16.24572 -15.90647 -15.47334 -15.34037 -14.96161 -14.50119 -14.08654 -13.78488 -13.69924 -13.52275 -13.32904 -13.01247 -12.88287 -12.63390 -12.48603 -12.45419 -12.28591 -11.99604 -11.89057 -11.80901 -11.67426 -11.37702 -11.23595 -11.00274 -10.91620 -10.29294 -10.24451 -10.19303 -10.07090 -9.94372 -9.87064 -9.50369 -8.92501 -8.32584 -8.04626 -7.81775 -6.78910 -3.92251 2.40695 2.73715 3.27827 3.33121 3.52110 3.78907 3.94182 4.15818 4.23967 4.29779 4.52365 4.54742 4.80626 4.85995 4.91234 4.93673 4.98970 5.03144 5.05049 5.16806 5.20405 5.24085 5.33508 5.41542 5.46522 5.50601 5.57063 5.57600 5.63243 5.72157 5.76932 5.78798 5.88640 5.95938 6.08743 6.11881 6.20126 6.24073 6.27298 6.42485 6.71044 7.31662 7.33040 7.45908 7.77535 7.92622 8.04686 8.55874 8.75742 9.43447 9.82823 10.64487 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.031345 B = 0.003007 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.083575 B = 9307.955989 C = 9441.710234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.532 3.468 3 O -0.549 6.549 4 N -0.617 5.617 5 C 0.110 3.890 6 C -0.133 4.133 7 H 0.094 0.906 8 C -0.095 4.095 9 H 0.088 0.912 10 C 0.112 3.888 11 C -0.107 4.107 12 H 0.076 0.924 13 C -0.112 4.112 14 C -0.105 4.105 15 C 0.095 3.905 16 H 0.081 0.919 17 N -0.510 5.510 18 C 0.042 3.958 19 C 0.441 3.559 20 O -0.573 6.573 21 N -0.574 5.574 22 C -0.381 4.381 23 H 0.099 0.901 24 C -0.009 4.009 25 N -0.901 5.901 26 Si 1.093 2.907 27 H -0.285 1.285 28 H -0.281 1.281 29 H -0.283 1.283 30 C 0.080 3.920 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.048 0.952 43 H 0.087 0.913 44 H 0.375 0.625 45 H 0.261 0.739 46 H 0.078 0.922 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.865 13.326 -9.709 19.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.322 3.678 3 O -0.427 6.427 4 N -0.351 5.351 5 C -0.014 4.014 6 C -0.154 4.154 7 H 0.112 0.888 8 C -0.114 4.114 9 H 0.106 0.894 10 C -0.011 4.011 11 C -0.127 4.127 12 H 0.094 0.906 13 C -0.149 4.149 14 C -0.143 4.143 15 C -0.014 4.014 16 H 0.099 0.901 17 N -0.233 5.233 18 C -0.089 4.089 19 C 0.227 3.773 20 O -0.457 6.457 21 N -0.212 5.212 22 C -0.511 4.511 23 H 0.117 0.883 24 C -0.211 4.211 25 N -0.540 5.540 26 Si 0.919 3.081 27 H -0.211 1.211 28 H -0.206 1.206 29 H -0.209 1.209 30 C -0.047 4.047 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.066 0.934 43 H 0.105 0.895 44 H 0.208 0.792 45 H 0.073 0.927 46 H 0.096 0.904 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.499 13.150 -8.358 18.249 hybrid contribution -0.892 0.737 -1.580 1.958 sum -10.390 13.887 -9.938 19.990 Atomic orbital electron populations 1.21959 0.91586 1.05433 1.04239 1.20346 0.90181 0.81773 0.75452 1.90733 1.70815 1.30535 1.50611 1.48970 1.07819 1.05569 1.72761 1.22649 0.97996 0.81359 0.99351 1.23168 0.95481 0.99283 0.97463 0.88821 1.22200 0.97491 0.95927 0.95793 0.89409 1.22337 0.81041 0.98742 0.98972 1.21705 0.98968 0.97665 0.94330 0.90579 1.21614 0.94496 0.97601 1.01233 1.21586 0.97547 0.93772 1.01412 1.21555 0.95852 0.95862 0.88127 0.90127 1.61862 1.12377 1.00803 1.48208 1.21985 0.99108 0.89990 0.97834 1.19677 0.87145 0.83092 0.87341 1.90548 1.56985 1.56760 1.41388 1.41949 1.31310 1.08608 1.39283 1.20560 1.10449 0.97328 1.22735 0.88274 1.26496 1.03219 0.92178 0.99231 1.70874 1.21199 1.37502 1.24434 0.83104 0.73815 0.76022 0.75194 1.21130 1.20621 1.20898 1.22174 0.90525 0.93214 0.98768 0.89266 0.88929 0.89489 0.89943 0.90954 0.89748 0.91375 0.91821 0.92127 0.92124 0.91352 0.93393 0.89531 0.79191 0.92733 0.90388 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 9.21 36.00 0.33 -0.84 16 2 C 0.53 5.81 6.05 -10.99 -0.07 5.75 16 3 O -0.55 -8.36 17.10 5.56 0.10 -8.26 16 4 N -0.62 -6.01 1.73 -168.29 -0.29 -6.30 16 5 C 0.11 0.85 5.68 -1.51 -0.01 0.84 16 6 C -0.13 -1.32 2.98 -88.26 -0.26 -1.59 16 7 H 0.09 0.93 6.56 -51.93 -0.34 0.59 16 8 C -0.09 -1.05 3.24 -89.12 -0.29 -1.34 16 9 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 10 C 0.11 1.17 5.79 -2.43 -0.01 1.15 16 11 C -0.11 -1.41 2.73 -90.41 -0.25 -1.65 16 12 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 13 C -0.11 -1.40 5.20 -26.54 -0.14 -1.54 16 14 C -0.11 -1.19 5.33 -26.63 -0.14 -1.33 16 15 C 0.10 1.11 2.37 -67.80 -0.16 0.94 16 16 H 0.08 0.85 8.13 -51.93 -0.42 0.42 16 17 N -0.51 -7.98 4.78 -228.33 -1.09 -9.07 16 18 C 0.04 0.70 5.56 -4.98 -0.03 0.67 16 19 C 0.44 9.97 7.04 -10.99 -0.08 9.89 16 20 O -0.57 -14.84 12.97 5.54 0.07 -14.77 16 21 N -0.57 -13.96 5.28 -10.96 -0.06 -14.02 16 22 C -0.38 -10.48 9.68 -14.93 -0.14 -10.62 16 23 H 0.10 2.90 7.16 -52.49 -0.38 2.52 16 24 C -0.01 -0.23 5.50 -17.47 -0.10 -0.33 16 25 N -0.90 -24.78 13.68 55.50 0.76 -24.02 16 26 Si 1.09 23.99 29.92 -169.99 -5.09 18.90 16 27 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 28 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 29 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 30 C 0.08 1.34 3.91 -3.89 -0.02 1.33 16 31 H 0.09 0.49 6.68 -51.92 -0.35 0.14 16 32 H 0.09 0.62 8.12 -51.93 -0.42 0.20 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.50 6.44 -51.93 -0.33 0.17 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 1.01 6.98 -51.93 -0.36 0.65 16 37 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 38 H 0.06 0.84 4.87 -51.93 -0.25 0.58 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.58 3.87 -51.93 -0.20 0.38 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.71 6.11 -51.93 -0.32 0.39 16 43 H 0.09 1.32 8.14 -51.92 -0.42 0.90 16 44 H 0.38 8.43 6.73 -40.82 -0.27 8.15 16 45 H 0.26 6.88 6.78 -40.82 -0.28 6.60 16 46 H 0.08 1.49 7.86 -51.93 -0.41 1.08 16 47 H 0.07 1.38 5.76 -51.93 -0.30 1.08 16 LS Contribution 344.22 15.07 5.19 5.19 Total: -1.00 -33.33 344.22 -8.58 -41.91 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -6.81 Total: 9.10 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -1.36 Total: 1.33 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -0.68 Total: -53.40 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: 0.17 Total: -23.03 kcal Atomic # 14 Polarization: 23.99 SS G_CDS: -5.09 Total: 18.90 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.33 -8.58 -41.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489085321.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.420 kcal (2) G-P(sol) polarization free energy of solvation -33.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds