Wall clock time and date at job start Tue Mar 31 2020 04:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52982 * 109.46877 * 137.45579 * 3 2 1 5 5 H 1.08682 * 110.49413 * 304.12689 * 4 3 2 6 6 C 1.59225 * 110.09854 * 66.45080 * 4 3 2 7 7 C 1.50517 * 104.13721 * 172.66742 * 6 4 3 8 8 H 1.09756 * 108.96468 * 73.93121 * 7 6 4 9 9 C 1.46442 * 141.29543 * 242.27843 * 7 6 4 10 10 H 1.09135 * 93.60660 * 128.25014 * 9 7 6 11 11 C 1.50155 * 146.15864 * 216.60534 * 9 7 6 12 12 C 1.59764 * 93.50514 * 231.78154 * 11 9 7 13 13 H 1.08393 * 110.22752 * 75.86003 * 12 11 9 14 14 C 1.50906 * 109.03717 * 196.50291 * 12 11 9 15 15 H 1.07995 * 120.00064 * 118.27393 * 14 12 11 16 16 C 1.37876 * 120.00067 * 298.54439 * 14 12 11 17 17 N 1.31523 * 119.99981 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00300 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47112 * 90.00199 * 18 16 14 20 20 H 1.48507 * 109.47018 * 210.00102 * 18 16 14 21 21 H 1.48498 * 109.47011 * 329.99931 * 18 16 14 22 22 C 1.54232 * 106.30647 * 314.85738 * 12 11 9 23 23 H 1.10520 * 109.51115 * 258.82265 * 22 12 11 24 24 C 1.55899 * 102.44144 * 14.71467 * 22 12 11 25 25 H 1.08853 * 116.76948 * 251.94832 * 24 22 12 26 26 C 1.42296 * 102.72246 * 122.28961 * 24 22 12 27 27 C 1.45942 * 118.86132 * 16.99814 * 26 24 22 28 28 C 1.56450 * 101.74073 * 223.01706 * 27 26 24 29 29 H 1.10681 * 114.58452 * 222.15476 * 28 27 26 30 30 C 1.52344 * 99.51654 * 99.78816 * 28 27 26 31 31 C 1.30872 * 115.69886 * 3.23459 * 30 28 27 32 32 C 1.52666 * 113.27459 * 1.74477 * 31 30 28 33 33 H 1.10540 * 112.31918 * 113.43744 * 32 31 30 34 34 C 1.45050 * 109.89060 * 182.21708 * 4 3 2 35 35 H 1.10088 * 92.70916 * 321.25711 * 34 4 3 36 36 C 1.53953 * 94.02817 * 203.75288 * 34 4 3 37 37 H 1.07540 * 112.52183 * 244.73318 * 36 34 4 38 38 H 1.09005 * 109.47191 * 257.45261 * 3 2 1 39 39 H 1.08990 * 109.47875 * 17.45320 * 3 2 1 40 40 H 1.08797 * 110.75464 * 53.16250 * 6 4 3 41 41 H 1.09191 * 110.15115 * 291.04574 * 6 4 3 42 42 H 1.08480 * 112.07386 * 347.19360 * 11 9 7 43 43 H 1.08420 * 112.13369 * 116.21306 * 11 9 7 44 44 H 0.96996 * 119.99943 * 179.97438 * 17 16 14 45 45 H 1.09680 * 111.73965 * 150.62985 * 26 24 22 46 46 H 1.09522 * 114.61594 * 99.46324 * 27 26 24 47 47 H 1.08026 * 123.01974 * 183.21764 * 30 28 27 48 48 H 1.08096 * 122.43645 * 181.66041 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.0635 -0.9753 5 1 2.7058 0.8981 -1.9674 6 6 2.7359 2.5170 -0.4488 7 6 3.4490 3.4485 -1.3918 8 1 2.9246 3.4503 -2.3559 9 6 4.4835 4.4849 -1.4098 10 1 5.0446 4.0079 -2.2152 11 6 4.9339 5.7873 -2.0062 12 6 6.3816 5.2266 -2.3832 13 1 6.3203 4.5882 -3.2571 14 6 7.3024 6.3892 -2.6621 15 1 8.1782 6.5434 -2.0493 16 6 7.0225 7.2578 -3.6956 17 7 5.9528 7.0735 -4.4382 18 14 8.1627 8.6966 -4.0412 19 1 9.2097 8.2774 -5.0073 20 1 7.3808 9.8209 -4.6156 21 1 8.8039 9.1352 -2.7757 22 6 6.8800 4.4488 -1.1482 23 1 7.5968 5.0725 -0.5837 24 6 5.5763 4.2775 -0.3106 25 1 5.4946 4.8733 0.5967 26 6 5.4766 2.8649 -0.1714 27 6 6.6559 2.0462 -0.4337 28 6 6.0464 0.8651 -1.2591 29 1 6.4327 -0.1354 -0.9855 30 6 6.4221 1.3193 -2.6639 31 6 7.1334 2.4155 -2.7347 32 6 7.4801 2.9990 -1.3672 33 1 8.5638 2.9537 -1.1540 34 6 4.5669 1.0366 -1.0216 35 1 4.6502 0.8547 0.0610 36 6 4.6869 2.4947 -1.5009 37 1 5.1090 2.5707 -2.4871 38 1 2.9713 0.2241 1.0032 39 1 2.9719 -0.9794 -0.3082 40 1 3.0775 2.6584 0.5744 41 1 1.6561 2.6675 -0.5092 42 1 4.3594 6.0525 -2.8873 43 1 4.9831 6.5794 -1.2675 44 1 5.7557 7.6848 -5.1650 45 1 4.9687 2.5832 0.7590 46 1 7.2001 1.7298 0.4625 47 1 6.1286 0.7825 -3.5543 48 1 7.4374 2.8496 -3.6768 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104291359.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:33:30 Heat of formation + Delta-G solvation = 301.485818 kcal Electronic energy + Delta-G solvation = -29074.121501 eV Core-core repulsion = 25682.961150 eV Total energy + Delta-G solvation = -3391.160351 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.73683 -38.31080 -37.47191 -36.30214 -33.40087 -32.01324 -31.79090 -30.20121 -28.40832 -26.46140 -25.56386 -25.29879 -24.21183 -22.50972 -20.78615 -20.22361 -19.07772 -18.15779 -17.94765 -17.33846 -16.87838 -16.43036 -15.89656 -15.44813 -15.07838 -14.53773 -14.48365 -14.07280 -13.93089 -13.31922 -12.99154 -12.87349 -12.76184 -12.41071 -12.18064 -11.95460 -11.76064 -11.72699 -11.39355 -11.26409 -11.15721 -10.94753 -10.90992 -10.83716 -10.68168 -10.48093 -10.38145 -9.96187 -9.77216 -9.57388 -9.45941 -9.19869 -9.02953 -8.91276 -8.47493 -8.30588 -8.09376 -7.62142 -6.02067 -4.04562 2.51878 2.67264 2.70078 3.26054 3.28740 3.36500 3.39208 3.92634 4.20820 4.37209 4.42796 4.58008 4.80776 4.94045 4.98161 5.11074 5.14356 5.24022 5.35690 5.39713 5.41845 5.54268 5.56144 5.64798 5.69636 5.75555 5.80129 5.84041 5.94598 6.00345 6.06410 6.16838 6.23615 6.28522 6.32893 6.41348 6.47796 6.58295 6.64381 6.77262 6.80409 6.87178 6.95896 6.97839 7.01851 7.15592 7.23822 7.37301 7.47650 7.52515 7.71521 7.82714 8.01409 8.41857 8.96182 9.59087 11.05942 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.020920 B = 0.004308 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.083668 B = 6498.011418 C = 7169.760716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.211 3.789 3 C -0.030 4.030 4 C 0.005 3.995 5 H 0.075 0.925 6 C -0.077 4.077 7 C -0.073 4.073 8 H 0.069 0.931 9 C -0.166 4.166 10 H 0.088 0.912 11 C -0.055 4.055 12 C 0.054 3.946 13 H 0.039 0.961 14 C -0.515 4.515 15 H 0.053 0.947 16 C 0.064 3.936 17 N -0.888 5.888 18 Si 0.886 3.114 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.074 4.074 23 H 0.062 0.938 24 C -0.094 4.094 25 H 0.080 0.920 26 C -0.099 4.099 27 C -0.101 4.101 28 C 0.032 3.968 29 H 0.087 0.913 30 C -0.179 4.179 31 C -0.136 4.136 32 C -0.047 4.047 33 H 0.084 0.916 34 C -0.201 4.201 35 H 0.043 0.957 36 C -0.149 4.149 37 H 0.128 0.872 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.045 0.955 44 H 0.259 0.741 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.112 0.888 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.949 -13.801 7.649 15.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.107 4.107 3 C -0.070 4.070 4 C -0.014 4.014 5 H 0.094 0.906 6 C -0.114 4.114 7 C -0.092 4.092 8 H 0.087 0.913 9 C -0.184 4.184 10 H 0.105 0.895 11 C -0.093 4.093 12 C 0.036 3.964 13 H 0.057 0.943 14 C -0.553 4.553 15 H 0.071 0.929 16 C -0.138 4.138 17 N -0.526 5.526 18 Si 0.714 3.286 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.093 4.093 23 H 0.080 0.920 24 C -0.112 4.112 25 H 0.099 0.901 26 C -0.117 4.117 27 C -0.119 4.119 28 C 0.014 3.986 29 H 0.105 0.895 30 C -0.197 4.197 31 C -0.154 4.154 32 C -0.065 4.065 33 H 0.102 0.898 34 C -0.219 4.219 35 H 0.062 0.938 36 C -0.166 4.166 37 H 0.145 0.855 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.089 0.911 46 H 0.096 0.904 47 H 0.130 0.870 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.655 -13.758 7.490 15.888 hybrid contribution 1.263 0.917 -0.269 1.584 sum -1.392 -12.842 7.221 14.799 Atomic orbital electron populations 1.81222 1.13169 1.09016 1.08862 1.29295 0.95382 0.92918 0.93082 1.19833 0.81408 1.02688 1.03102 1.20419 0.90365 0.92591 0.98074 0.90617 1.22218 0.98878 0.91054 0.99260 1.20387 0.95026 0.94183 0.99573 0.91315 1.22081 0.93355 1.02597 1.00341 0.89460 1.22449 0.96992 0.91951 0.97940 1.20509 0.91645 0.93227 0.90991 0.94301 1.21378 1.08985 1.10483 1.14413 0.92850 1.24955 0.95129 0.97641 0.96038 1.69948 1.25596 1.37600 1.19496 0.86690 0.80899 0.82533 0.78444 1.20833 1.21309 1.19980 1.23654 0.94693 0.92184 0.98770 0.91966 1.21102 0.97077 0.95013 0.98005 0.90134 1.20246 0.97882 0.96527 0.97060 1.22271 0.96743 0.94741 0.98165 1.20961 0.87268 0.97317 0.93015 0.89545 1.23361 1.00724 0.98065 0.97585 1.23654 0.97872 0.94981 0.98905 1.22927 0.98206 0.93968 0.91416 0.89779 1.19980 0.93438 1.04432 1.04093 0.93838 1.27157 0.99077 0.91311 0.99087 0.85500 0.87447 0.87064 0.90942 0.92059 0.90814 0.93639 0.93091 0.91078 0.90371 0.86973 0.85849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.02 18.54 42.16 0.78 -5.24 16 2 C 0.21 2.18 14.80 -20.76 -0.31 1.87 16 3 C -0.03 -0.22 4.86 -29.53 -0.14 -0.36 16 4 C 0.01 0.05 2.22 -90.88 -0.20 -0.15 16 5 H 0.08 0.78 8.12 -52.11 -0.42 0.36 16 6 C -0.08 -0.91 5.19 -24.50 -0.13 -1.04 16 7 C -0.07 -1.12 5.11 -93.01 -0.48 -1.60 16 8 H 0.07 1.10 8.20 -51.50 -0.42 0.68 16 9 C -0.17 -3.05 4.51 -105.11 -0.47 -3.53 16 10 H 0.09 1.70 1.51 -71.12 -0.11 1.60 16 11 C -0.06 -1.24 5.85 -24.35 -0.14 -1.38 16 12 C 0.05 1.24 1.79 -87.23 -0.16 1.08 16 13 H 0.04 0.96 5.69 -52.27 -0.30 0.67 16 14 C -0.51 -13.40 8.51 -34.34 -0.29 -13.69 16 15 H 0.05 1.39 7.41 -52.49 -0.39 1.00 16 16 C 0.06 1.71 5.31 -17.82 -0.09 1.61 16 17 N -0.89 -24.50 11.90 55.43 0.66 -23.84 16 18 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 C -0.07 -1.41 3.11 -85.43 -0.27 -1.68 16 23 H 0.06 1.26 7.58 -51.06 -0.39 0.87 16 24 C -0.09 -1.61 4.49 -92.12 -0.41 -2.02 16 25 H 0.08 1.38 8.13 -52.01 -0.42 0.96 16 26 C -0.10 -1.39 2.10 -95.49 -0.20 -1.59 16 27 C -0.10 -1.33 4.27 -90.05 -0.38 -1.71 16 28 C 0.03 0.37 4.24 -90.19 -0.38 -0.01 16 29 H 0.09 0.82 8.28 -50.96 -0.42 0.40 16 30 C -0.18 -2.39 7.87 -35.17 -0.28 -2.67 16 31 C -0.14 -2.14 7.19 -35.01 -0.25 -2.39 16 32 C -0.05 -0.75 4.18 -85.74 -0.36 -1.11 16 33 H 0.08 1.28 8.27 -51.05 -0.42 0.86 16 34 C -0.20 -2.17 4.74 -94.95 -0.45 -2.62 16 35 H 0.04 0.42 4.71 -51.31 -0.24 0.18 16 36 C -0.15 -2.11 1.48 -96.58 -0.14 -2.25 16 37 H 0.13 2.10 3.04 -52.74 -0.16 1.94 16 38 H 0.11 0.60 7.73 -51.93 -0.40 0.20 16 39 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.82 6.63 -52.04 -0.35 0.48 16 41 H 0.06 0.73 7.92 -51.82 -0.41 0.32 16 42 H 0.07 1.83 7.20 -52.22 -0.38 1.45 16 43 H 0.04 1.05 8.05 -52.25 -0.42 0.63 16 44 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.07 0.92 5.98 -51.54 -0.31 0.62 16 46 H 0.08 0.93 8.19 -51.63 -0.42 0.51 16 47 H 0.11 1.37 8.06 -52.47 -0.42 0.95 16 48 H 0.12 2.12 7.66 -52.43 -0.40 1.71 16 LS Contribution 337.91 15.07 5.09 5.09 Total: -1.00 -28.12 337.91 -10.79 -38.91 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -6.76 Total: 4.56 kcal Atomic # 6 Polarization: -29.68 SS G_CDS: -5.54 Total: -35.23 kcal Atomic # 7 Polarization: -30.52 SS G_CDS: 1.44 Total: -29.08 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.12 -10.79 -38.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104291359.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 340.392 kcal (2) G-P(sol) polarization free energy of solvation -28.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 312.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 301.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds