Wall clock time and date at job start Tue Mar 31 2020 04:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52982 * 109.46877 * 137.45579 * 3 2 1 5 5 H 1.08682 * 110.49413 * 304.12689 * 4 3 2 6 6 C 1.59225 * 110.09854 * 66.45080 * 4 3 2 7 7 C 1.50517 * 104.13721 * 172.66742 * 6 4 3 8 8 H 1.09756 * 108.96468 * 73.93121 * 7 6 4 9 9 C 1.46442 * 141.29543 * 242.27843 * 7 6 4 10 10 H 1.09135 * 93.60660 * 128.25014 * 9 7 6 11 11 C 1.50155 * 146.15864 * 216.60534 * 9 7 6 12 12 C 1.59764 * 93.50514 * 231.78154 * 11 9 7 13 13 H 1.08393 * 110.22752 * 75.86003 * 12 11 9 14 14 C 1.50906 * 109.03717 * 196.50291 * 12 11 9 15 15 H 1.07995 * 120.00064 * 118.27393 * 14 12 11 16 16 C 1.37876 * 120.00067 * 298.54439 * 14 12 11 17 17 N 1.31523 * 119.99981 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00300 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47112 * 90.00199 * 18 16 14 20 20 H 1.48507 * 109.47018 * 210.00102 * 18 16 14 21 21 H 1.48498 * 109.47011 * 329.99931 * 18 16 14 22 22 C 1.54232 * 106.30647 * 314.85738 * 12 11 9 23 23 H 1.10520 * 109.51115 * 258.82265 * 22 12 11 24 24 C 1.55899 * 102.44144 * 14.71467 * 22 12 11 25 25 H 1.08853 * 116.76948 * 251.94832 * 24 22 12 26 26 C 1.42296 * 102.72246 * 122.28961 * 24 22 12 27 27 C 1.45942 * 118.86132 * 16.99814 * 26 24 22 28 28 C 1.56450 * 101.74073 * 223.01706 * 27 26 24 29 29 H 1.10681 * 114.58452 * 222.15476 * 28 27 26 30 30 C 1.52344 * 99.51654 * 99.78816 * 28 27 26 31 31 C 1.30872 * 115.69886 * 3.23459 * 30 28 27 32 32 C 1.52666 * 113.27459 * 1.74477 * 31 30 28 33 33 H 1.10540 * 112.31918 * 113.43744 * 32 31 30 34 34 C 1.45050 * 109.89060 * 182.21708 * 4 3 2 35 35 H 1.10088 * 92.70916 * 321.25711 * 34 4 3 36 36 C 1.53953 * 94.02817 * 203.75288 * 34 4 3 37 37 H 1.07540 * 112.52183 * 244.73318 * 36 34 4 38 38 H 1.09005 * 109.47191 * 257.45261 * 3 2 1 39 39 H 1.08990 * 109.47875 * 17.45320 * 3 2 1 40 40 H 1.08797 * 110.75464 * 53.16250 * 6 4 3 41 41 H 1.09191 * 110.15115 * 291.04574 * 6 4 3 42 42 H 1.08480 * 112.07386 * 347.19360 * 11 9 7 43 43 H 1.08420 * 112.13369 * 116.21306 * 11 9 7 44 44 H 0.96996 * 119.99943 * 179.97438 * 17 16 14 45 45 H 1.09680 * 111.73965 * 150.62985 * 26 24 22 46 46 H 1.09522 * 114.61594 * 99.46324 * 27 26 24 47 47 H 1.08026 * 123.01974 * 183.21764 * 30 28 27 48 48 H 1.08096 * 122.43645 * 181.66041 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.0635 -0.9753 5 1 2.7058 0.8981 -1.9674 6 6 2.7359 2.5170 -0.4488 7 6 3.4490 3.4485 -1.3918 8 1 2.9246 3.4503 -2.3559 9 6 4.4835 4.4849 -1.4098 10 1 5.0446 4.0079 -2.2152 11 6 4.9339 5.7873 -2.0062 12 6 6.3816 5.2266 -2.3832 13 1 6.3203 4.5882 -3.2571 14 6 7.3024 6.3892 -2.6621 15 1 8.1782 6.5434 -2.0493 16 6 7.0225 7.2578 -3.6956 17 7 5.9528 7.0735 -4.4382 18 14 8.1627 8.6966 -4.0412 19 1 9.2097 8.2774 -5.0073 20 1 7.3808 9.8209 -4.6156 21 1 8.8039 9.1352 -2.7757 22 6 6.8800 4.4488 -1.1482 23 1 7.5968 5.0725 -0.5837 24 6 5.5763 4.2775 -0.3106 25 1 5.4946 4.8733 0.5967 26 6 5.4766 2.8649 -0.1714 27 6 6.6559 2.0462 -0.4337 28 6 6.0464 0.8651 -1.2591 29 1 6.4327 -0.1354 -0.9855 30 6 6.4221 1.3193 -2.6639 31 6 7.1334 2.4155 -2.7347 32 6 7.4801 2.9990 -1.3672 33 1 8.5638 2.9537 -1.1540 34 6 4.5669 1.0366 -1.0216 35 1 4.6502 0.8547 0.0610 36 6 4.6869 2.4947 -1.5009 37 1 5.1090 2.5707 -2.4871 38 1 2.9713 0.2241 1.0032 39 1 2.9719 -0.9794 -0.3082 40 1 3.0775 2.6584 0.5744 41 1 1.6561 2.6675 -0.5092 42 1 4.3594 6.0525 -2.8873 43 1 4.9831 6.5794 -1.2675 44 1 5.7557 7.6848 -5.1650 45 1 4.9687 2.5832 0.7590 46 1 7.2001 1.7298 0.4625 47 1 6.1286 0.7825 -3.5543 48 1 7.4374 2.8496 -3.6768 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104291359.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:33:29 Heat of formation + Delta-G solvation = 289.200373 kcal Electronic energy + Delta-G solvation = -29074.654238 eV Core-core repulsion = 25682.961150 eV Total energy + Delta-G solvation = -3391.693088 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.91062 -39.46663 -38.60796 -37.23132 -35.10725 -33.23515 -33.10735 -31.52154 -29.66974 -27.66459 -27.21603 -26.42301 -25.44951 -24.02649 -21.76187 -21.58369 -20.38456 -19.54335 -19.04250 -18.51331 -18.15424 -17.78787 -17.15684 -16.60472 -16.46063 -15.89543 -15.71692 -15.19028 -15.04296 -14.63757 -14.28827 -14.15454 -13.75163 -13.57003 -13.48713 -13.26393 -13.15486 -12.87370 -12.72062 -12.70299 -12.53554 -12.34699 -12.30032 -11.97150 -11.85958 -11.78670 -11.61633 -11.41386 -11.32158 -10.92979 -10.72985 -10.72117 -10.60745 -10.39987 -10.34096 -9.71055 -9.39143 -8.74505 -8.11517 -6.20896 1.35609 1.37272 1.43428 1.46776 1.90016 1.99470 2.34903 2.40780 3.03061 3.13564 3.23940 3.32984 3.49658 3.72604 3.80300 4.03758 4.08992 4.21309 4.27548 4.31364 4.36743 4.53148 4.58549 4.60230 4.65233 4.70211 4.76637 4.92554 4.94073 4.95323 4.97044 5.02282 5.08036 5.11255 5.14744 5.19847 5.25077 5.27757 5.29239 5.44328 5.51633 5.56743 5.62047 5.65092 5.73441 5.76259 5.82370 5.90506 5.97756 6.00792 6.07122 6.09794 6.41798 6.78491 6.88822 7.45646 8.94988 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.020920 B = 0.004308 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.083668 B = 6498.011418 C = 7169.760716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C 0.237 3.763 3 C -0.022 4.022 4 C 0.012 3.988 5 H 0.067 0.933 6 C -0.070 4.070 7 C -0.083 4.083 8 H 0.045 0.955 9 C -0.162 4.162 10 H 0.073 0.927 11 C -0.059 4.059 12 C 0.059 3.941 13 H 0.010 0.990 14 C -0.533 4.533 15 H 0.046 0.954 16 C 0.014 3.986 17 N -0.917 5.917 18 Si 0.946 3.054 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.269 1.269 22 C -0.078 4.078 23 H 0.039 0.961 24 C -0.086 4.086 25 H 0.081 0.919 26 C -0.097 4.097 27 C -0.090 4.090 28 C 0.042 3.958 29 H 0.135 0.865 30 C -0.150 4.150 31 C -0.179 4.179 32 C -0.050 4.050 33 H 0.085 0.915 34 C -0.178 4.178 35 H 0.081 0.919 36 C -0.154 4.154 37 H 0.097 0.903 38 H 0.142 0.858 39 H 0.149 0.851 40 H 0.091 0.909 41 H 0.058 0.942 42 H 0.035 0.965 43 H 0.025 0.975 44 H 0.258 0.742 45 H 0.107 0.893 46 H 0.111 0.889 47 H 0.121 0.879 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.602 -17.895 10.829 20.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.191 5.191 2 C -0.079 4.079 3 C -0.061 4.061 4 C -0.008 4.008 5 H 0.086 0.914 6 C -0.107 4.107 7 C -0.101 4.101 8 H 0.064 0.936 9 C -0.179 4.179 10 H 0.090 0.910 11 C -0.098 4.098 12 C 0.041 3.959 13 H 0.028 0.972 14 C -0.571 4.571 15 H 0.064 0.936 16 C -0.184 4.184 17 N -0.557 5.557 18 Si 0.772 3.228 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.194 1.194 22 C -0.097 4.097 23 H 0.057 0.943 24 C -0.104 4.104 25 H 0.099 0.901 26 C -0.115 4.115 27 C -0.108 4.108 28 C 0.025 3.975 29 H 0.153 0.847 30 C -0.168 4.168 31 C -0.197 4.197 32 C -0.068 4.068 33 H 0.103 0.897 34 C -0.196 4.196 35 H 0.099 0.901 36 C -0.171 4.171 37 H 0.114 0.886 38 H 0.160 0.840 39 H 0.167 0.833 40 H 0.109 0.891 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.044 0.956 44 H 0.067 0.933 45 H 0.125 0.875 46 H 0.129 0.871 47 H 0.139 0.861 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.298 -17.856 10.672 20.928 hybrid contribution 1.172 2.306 -1.373 2.929 sum -1.125 -15.550 9.299 18.153 Atomic orbital electron populations 1.81268 1.15470 1.11231 1.11112 1.29917 0.95929 0.90957 0.91097 1.20071 0.78762 1.03265 1.03978 1.20253 0.89895 0.91894 0.98787 0.91413 1.22280 0.98271 0.91013 0.99182 1.20335 0.96216 0.93193 1.00364 0.93642 1.22066 0.95804 0.99070 1.00969 0.90977 1.22171 0.97473 0.93783 0.96327 1.20383 0.91264 0.92282 0.92018 0.97165 1.21818 1.09262 1.11727 1.14256 0.93619 1.25697 0.96508 1.00165 0.96054 1.70094 1.27099 1.38502 1.19966 0.85747 0.79152 0.79534 0.78396 1.20207 1.21080 1.19380 1.23590 0.95521 0.94020 0.96542 0.94284 1.21013 0.94673 0.97910 0.96851 0.90119 1.20314 0.99059 0.94035 0.98068 1.22308 0.95548 0.94484 0.98455 1.21121 0.87645 0.98624 0.90145 0.84713 1.23691 0.97094 0.96190 0.99822 1.23408 1.01657 0.97018 0.97637 1.22843 0.98698 0.92475 0.92776 0.89727 1.19919 0.93467 0.99694 1.06560 0.90080 1.26880 0.97659 0.94454 0.98156 0.88619 0.84038 0.83314 0.89052 0.92371 0.94601 0.95600 0.93323 0.87496 0.87064 0.86108 0.89656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.67 18.54 20.01 0.37 -12.30 16 2 C 0.24 3.86 14.80 89.44 1.32 5.18 16 3 C -0.02 -0.15 4.86 28.78 0.14 -0.01 16 4 C 0.01 0.16 2.22 -10.96 -0.02 0.14 16 5 H 0.07 1.12 8.12 -2.55 -0.02 1.10 16 6 C -0.07 -1.40 5.19 32.04 0.17 -1.24 16 7 C -0.08 -2.49 5.11 -12.34 -0.06 -2.56 16 8 H 0.05 1.54 8.20 -1.98 -0.02 1.52 16 9 C -0.16 -6.20 4.51 -20.18 -0.09 -6.30 16 10 H 0.07 3.01 1.51 -20.41 -0.03 2.98 16 11 C -0.06 -2.93 5.85 32.14 0.19 -2.74 16 12 C 0.06 2.92 1.79 -8.59 -0.02 2.91 16 13 H 0.01 0.58 5.69 -2.71 -0.02 0.56 16 14 C -0.53 -29.90 8.51 25.67 0.22 -29.68 16 15 H 0.05 2.55 7.41 -2.91 -0.02 2.53 16 16 C 0.01 0.82 5.31 84.65 0.45 1.27 16 17 N -0.92 -54.46 11.90 21.45 0.26 -54.20 16 18 Si 0.95 44.74 29.54 68.60 2.03 46.77 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 21 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 22 C -0.08 -3.10 3.11 -7.43 -0.02 -3.13 16 23 H 0.04 1.67 7.58 -1.57 -0.01 1.66 16 24 C -0.09 -2.92 4.49 -11.77 -0.05 -2.97 16 25 H 0.08 2.70 8.13 -2.46 -0.02 2.68 16 26 C -0.10 -2.34 2.10 -13.95 -0.03 -2.37 16 27 C -0.09 -1.92 4.27 -10.43 -0.04 -1.97 16 28 C 0.04 0.70 4.24 -10.52 -0.04 0.66 16 29 H 0.14 1.27 8.28 -1.48 -0.01 1.26 16 30 C -0.15 -3.67 7.87 26.31 0.21 -3.46 16 31 C -0.18 -5.79 7.19 26.41 0.19 -5.60 16 32 C -0.05 -1.56 4.18 -7.63 -0.03 -1.59 16 33 H 0.08 2.56 8.27 -1.56 -0.01 2.54 16 34 C -0.18 -2.70 4.74 -13.60 -0.06 -2.77 16 35 H 0.08 0.77 4.71 -1.80 -0.01 0.76 16 36 C -0.15 -4.01 1.48 -14.65 -0.02 -4.03 16 37 H 0.10 3.19 3.04 -3.15 -0.01 3.18 16 38 H 0.14 0.21 7.73 -2.38 -0.02 0.20 16 39 H 0.15 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.09 1.53 6.63 -2.49 -0.02 1.51 16 41 H 0.06 1.23 7.92 -2.29 -0.02 1.21 16 42 H 0.04 1.98 7.20 -2.66 -0.02 1.96 16 43 H 0.03 1.30 8.05 -2.69 -0.02 1.28 16 44 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 45 H 0.11 1.98 5.98 -2.02 -0.01 1.96 16 46 H 0.11 1.81 8.19 -2.11 -0.02 1.79 16 47 H 0.12 2.71 8.06 -2.90 -0.02 2.69 16 48 H 0.09 3.30 7.66 -2.86 -0.02 3.28 16 Total: -1.00 -71.62 337.91 6.01 -65.61 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.98 Total: 14.37 kcal Atomic # 6 Polarization: -62.63 SS G_CDS: 2.38 Total: -60.25 kcal Atomic # 7 Polarization: -67.12 SS G_CDS: 0.63 Total: -66.50 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -71.62 6.01 -65.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104291359.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 354.810 kcal (2) G-P(sol) polarization free energy of solvation -71.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 283.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 289.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds