Wall clock time and date at job start Tue Mar 31 2020 05:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46496 * 109.47157 * 2 1 4 4 N 1.28522 * 124.44156 * 89.98048 * 3 2 1 5 5 C 1.31133 * 109.06220 * 180.02562 * 4 3 2 6 6 C 1.50695 * 127.11693 * 179.97438 * 5 4 3 7 7 C 1.40924 * 105.77232 * 359.97438 * 5 4 3 8 8 C 1.47802 * 127.23445 * 179.97438 * 7 5 4 9 9 O 1.21551 * 120.00241 * 0.02562 * 8 7 5 10 10 N 1.34786 * 119.99783 * 180.02562 * 8 7 5 11 11 C 1.46491 * 119.99749 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47109 * 180.02562 * 11 10 8 13 13 H 1.08998 * 109.69930 * 299.90180 * 12 11 10 14 14 C 1.52765 * 109.51097 * 179.79272 * 12 11 10 15 15 C 1.53039 * 109.38081 * 185.70626 * 14 12 11 16 16 C 1.53037 * 109.54087 * 61.23759 * 15 14 12 17 17 C 1.53191 * 109.31344 * 298.63561 * 16 15 14 18 18 N 1.46922 * 108.77685 * 54.63312 * 17 16 15 19 19 C 1.36929 * 120.63182 * 126.36914 * 18 17 16 20 20 H 1.07998 * 120.00356 * 211.23708 * 19 18 17 21 21 C 1.38821 * 120.00021 * 31.24122 * 19 18 17 22 22 N 1.31620 * 120.00047 * 196.87347 * 21 19 18 23 23 Si 1.86798 * 119.99697 * 16.86740 * 21 19 18 24 24 H 1.48495 * 109.47310 * 271.30988 * 23 21 19 25 25 H 1.48500 * 109.47255 * 31.31502 * 23 21 19 26 26 H 1.48501 * 109.46895 * 151.31027 * 23 21 19 27 27 N 1.28586 * 124.44687 * 270.31258 * 3 2 1 28 28 H 1.09001 * 109.46911 * 59.99330 * 1 2 3 29 29 H 1.08991 * 109.47256 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46701 * 299.99816 * 1 2 3 31 31 H 1.09002 * 109.46701 * 240.00184 * 2 1 3 32 32 H 1.08995 * 109.46767 * 120.00273 * 2 1 3 33 33 H 1.08999 * 109.47161 * 270.02608 * 6 5 4 34 34 H 1.09002 * 109.47127 * 30.01874 * 6 5 4 35 35 H 1.08998 * 109.47465 * 150.02418 * 6 5 4 36 36 H 0.96992 * 119.99883 * 359.97438 * 10 8 7 37 37 H 1.09001 * 109.47755 * 59.99802 * 11 10 8 38 38 H 1.09005 * 109.47461 * 300.00136 * 11 10 8 39 39 H 1.08992 * 109.56971 * 65.66755 * 14 12 11 40 40 H 1.08999 * 109.35775 * 305.61463 * 14 12 11 41 41 H 1.08994 * 109.45970 * 301.21447 * 15 14 12 42 42 H 1.09004 * 109.44854 * 181.25072 * 15 14 12 43 43 H 1.09004 * 109.49656 * 178.68218 * 16 15 14 44 44 H 1.09004 * 109.49750 * 58.58832 * 16 15 14 45 45 H 1.09010 * 109.58362 * 294.84776 * 17 16 15 46 46 H 1.08997 * 109.70716 * 174.49768 * 17 16 15 47 47 H 0.96991 * 119.99618 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2603 2.0666 1.0599 5 6 2.6814 3.2588 0.7121 6 6 3.0789 4.3863 1.6296 7 6 2.6853 3.2677 -0.6971 8 6 3.0790 4.3831 -1.5833 9 8 3.4508 5.4370 -1.1053 10 7 3.0258 4.2316 -2.9215 11 6 3.4165 5.3369 -3.7999 12 6 3.2640 4.9063 -5.2601 13 1 3.9034 4.0460 -5.4582 14 6 3.6664 6.0601 -6.1770 15 6 3.3787 5.6778 -7.6306 16 6 1.8804 5.4197 -7.8051 17 6 1.4590 4.2533 -6.9059 18 7 1.8633 4.5506 -5.5251 19 6 0.9508 4.5027 -4.5053 20 1 1.0587 5.1570 -3.6529 21 6 -0.1130 3.6130 -4.5670 22 7 -1.1570 3.7801 -3.7831 23 14 -0.0628 2.1787 -5.7627 24 1 -0.6285 2.6028 -7.0685 25 1 1.3435 1.7404 -5.9513 26 1 -0.8634 1.0525 -5.2186 27 7 2.2554 2.0688 -1.0604 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.2056 4.9999 1.8506 34 1 3.4789 3.9762 2.5570 35 1 3.8397 4.9982 1.1449 36 1 2.7295 3.3904 -3.3029 37 1 4.4551 5.6052 -3.6064 38 1 2.7768 6.1981 -3.6068 39 1 4.7300 6.2665 -6.0587 40 1 3.0916 6.9481 -5.9138 41 1 3.9346 4.7756 -7.8856 42 1 3.6859 6.4915 -8.2876 43 1 1.6729 5.1703 -8.8458 44 1 1.3224 6.3138 -7.5266 45 1 1.9481 3.3385 -7.2410 46 1 0.3774 4.1266 -6.9508 47 1 -1.9004 3.1587 -3.8265 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024828621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:36 Heat of formation + Delta-G solvation = 90.905225 kcal Electronic energy + Delta-G solvation = -28715.891249 eV Core-core repulsion = 24937.042926 eV Total energy + Delta-G solvation = -3778.848323 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.31077 -39.11563 -37.87953 -34.94265 -34.26204 -33.04143 -32.67849 -31.27959 -30.76490 -30.61094 -27.83474 -26.36968 -25.13547 -23.97825 -22.66986 -22.33404 -20.83553 -20.68858 -19.88915 -19.31049 -17.49246 -16.81929 -16.45349 -16.08058 -15.61542 -15.21242 -14.91486 -14.49338 -13.93934 -13.74927 -13.70811 -13.62795 -13.38341 -13.23170 -13.12772 -12.67479 -12.50710 -12.35429 -12.15376 -12.09065 -11.94246 -11.63503 -11.44828 -11.30245 -11.17260 -10.81528 -10.64833 -10.61363 -10.42954 -10.18494 -9.94280 -9.92830 -9.65333 -9.48365 -9.37175 -8.90951 -8.66559 -8.20038 -6.92012 -5.94589 -3.35939 1.76930 2.24284 2.39081 3.28503 3.43881 3.45884 3.69567 3.92225 4.21465 4.50146 4.80682 4.80935 4.85468 5.02979 5.06242 5.25621 5.32751 5.34668 5.42516 5.50926 5.55250 5.64766 5.76655 5.76791 5.87956 5.91885 5.98576 6.02357 6.06757 6.12420 6.19364 6.22256 6.25661 6.39582 6.44135 6.48145 6.53185 6.58255 6.70592 6.76436 6.85752 6.99293 7.15901 7.96173 8.20906 8.35636 8.52902 8.84637 8.92633 9.70215 10.07882 11.20038 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.012964 B = 0.005113 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.301365 B = 5475.046352 C = 6987.352738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.138 3.862 3 N -0.147 5.147 4 N -0.301 5.301 5 C 0.054 3.946 6 C -0.064 4.064 7 C -0.035 4.035 8 C 0.605 3.395 9 O -0.550 6.550 10 N -0.677 5.677 11 C 0.135 3.865 12 C 0.163 3.837 13 H 0.036 0.964 14 C -0.128 4.128 15 C -0.108 4.108 16 C -0.136 4.136 17 C 0.125 3.875 18 N -0.604 5.604 19 C -0.262 4.262 20 H 0.093 0.907 21 C 0.032 3.968 22 N -0.903 5.903 23 Si 0.882 3.118 24 H -0.290 1.290 25 H -0.271 1.271 26 H -0.307 1.307 27 N -0.235 5.235 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.417 0.583 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.063 0.937 45 H 0.023 0.977 46 H 0.072 0.928 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.328 -4.659 3.168 10.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.018 3.982 3 N -0.049 5.049 4 N -0.142 5.142 5 C -0.110 4.110 6 C -0.122 4.122 7 C -0.198 4.198 8 C 0.388 3.612 9 O -0.428 6.428 10 N -0.327 5.327 11 C 0.011 3.989 12 C 0.056 3.944 13 H 0.054 0.946 14 C -0.168 4.168 15 C -0.146 4.146 16 C -0.175 4.175 17 C 0.000 4.000 18 N -0.329 5.329 19 C -0.390 4.390 20 H 0.110 0.890 21 C -0.167 4.167 22 N -0.545 5.545 23 Si 0.713 3.287 24 H -0.217 1.217 25 H -0.197 1.197 26 H -0.235 1.235 27 N -0.082 5.082 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.255 0.745 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.041 0.959 46 H 0.090 0.910 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.970 -5.282 3.541 10.196 hybrid contribution -0.326 -0.606 -1.029 1.238 sum 7.644 -5.888 2.511 9.971 Atomic orbital electron populations 1.22206 0.92946 1.03676 1.04380 1.21992 0.96319 0.74373 1.05484 1.48031 1.44397 1.13180 0.99279 1.73819 1.19142 1.05562 1.15643 1.23190 1.01215 0.93783 0.92835 1.20163 1.02780 0.92867 0.96419 1.22989 1.08756 0.93924 0.94144 1.16548 0.78022 0.84742 0.81887 1.90703 1.49634 1.26816 1.75650 1.45800 1.64247 1.18247 1.04360 1.21332 0.98774 0.90203 0.88602 1.20662 0.86988 0.94980 0.91726 0.94610 1.21861 0.99937 0.99523 0.95476 1.21364 0.96729 1.00240 0.96238 1.22005 0.95972 1.00826 0.98683 1.21380 0.99313 0.94420 0.84899 1.44398 1.04055 1.81753 1.02702 1.18967 1.03248 1.16519 1.00283 0.88951 1.25309 0.96628 0.97854 0.96957 1.69810 1.06399 1.37546 1.40763 0.87007 0.77630 0.83734 0.80335 1.21733 1.19653 1.23516 1.74469 1.13715 1.04765 1.15299 0.90641 0.89799 0.91437 0.87373 0.87521 0.90312 0.91222 0.88714 0.74502 0.92078 0.90894 0.92461 0.91554 0.92778 0.93056 0.93113 0.91785 0.95933 0.90978 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 10.24 37.16 0.38 -1.62 16 2 C 0.14 1.59 7.24 -4.04 -0.03 1.56 16 3 N -0.15 -2.44 3.94 -10.61 -0.04 -2.48 16 4 N -0.30 -5.13 12.01 33.92 0.41 -4.72 16 5 C 0.05 0.96 7.39 -81.88 -0.61 0.35 16 6 C -0.06 -0.91 10.00 36.00 0.36 -0.55 16 7 C -0.03 -0.69 7.21 -82.68 -0.60 -1.29 16 8 C 0.61 12.59 7.83 -12.34 -0.10 12.49 16 9 O -0.55 -11.89 15.20 5.32 0.08 -11.81 16 10 N -0.68 -13.78 3.84 -61.27 -0.24 -14.02 16 11 C 0.13 2.52 4.42 -4.05 -0.02 2.50 16 12 C 0.16 2.99 2.99 -67.82 -0.20 2.79 16 13 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 14 C -0.13 -1.99 5.35 -26.83 -0.14 -2.13 16 15 C -0.11 -1.60 5.89 -26.69 -0.16 -1.76 16 16 C -0.14 -2.31 6.08 -26.61 -0.16 -2.47 16 17 C 0.13 2.60 4.20 -3.71 -0.02 2.59 16 18 N -0.60 -13.28 2.72 -165.03 -0.45 -13.73 16 19 C -0.26 -6.78 7.44 -15.06 -0.11 -6.89 16 20 H 0.09 2.64 6.04 -52.49 -0.32 2.32 16 21 C 0.03 0.88 5.27 -17.43 -0.09 0.79 16 22 N -0.90 -26.79 13.97 55.49 0.78 -26.01 16 23 Si 0.88 21.62 24.32 -169.99 -4.13 17.49 16 24 H -0.29 -6.96 6.51 56.52 0.37 -6.60 16 25 H -0.27 -6.49 6.75 56.52 0.38 -6.11 16 26 H -0.31 -7.74 7.11 56.52 0.40 -7.33 16 27 N -0.24 -4.57 11.84 33.42 0.40 -4.18 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 1.40 6.77 -51.93 -0.35 1.05 16 36 H 0.42 8.97 7.17 -40.82 -0.29 8.68 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 1.51 7.42 -51.93 -0.39 1.13 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.02 0.47 7.05 -51.92 -0.37 0.10 16 46 H 0.07 1.67 4.64 -51.93 -0.24 1.43 16 47 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 369.26 15.07 5.56 5.56 Total: -1.00 -32.09 369.26 -6.61 -38.70 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -7.48 Total: 8.83 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -1.49 Total: 6.36 kcal Atomic # 7 Polarization: -65.98 SS G_CDS: 0.85 Total: -65.13 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.08 Total: -11.81 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.13 Total: 17.49 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.09 -6.61 -38.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024828621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.602 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds