Wall clock time and date at job start Tue Mar 31 2020 04:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00106 * 2 1 4 4 H 1.48500 * 109.47292 * 270.00658 * 3 2 1 5 5 H 1.48503 * 109.47008 * 29.99797 * 3 2 1 6 6 H 1.48497 * 109.47468 * 150.00031 * 3 2 1 7 7 C 1.38813 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99996 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99584 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99987 * 179.97438 * 9 7 2 11 11 H 1.09010 * 109.78754 * 35.49464 * 10 9 7 12 12 C 1.53432 * 109.63529 * 155.98560 * 10 9 7 13 13 C 1.53111 * 109.32361 * 192.04787 * 12 10 9 14 14 C 1.52458 * 109.68324 * 282.97513 * 13 12 10 15 15 C 1.53492 * 109.13424 * 316.06372 * 14 13 12 16 16 C 1.53618 * 108.46063 * 114.21828 * 15 14 13 17 17 N 1.47135 * 107.51720 * 290.23835 * 16 15 14 18 18 C 1.34780 * 120.18785 * 252.15772 * 17 16 15 19 19 O 1.21279 * 119.99775 * 179.97438 * 18 17 16 20 20 C 1.50698 * 120.00098 * 359.97438 * 18 17 16 21 21 C 1.52994 * 109.47146 * 180.02562 * 20 18 17 22 22 C 1.50708 * 109.47302 * 179.97438 * 21 20 18 23 23 N 1.33233 * 125.52838 * 269.69844 * 22 21 20 24 24 C 1.30835 * 109.83319 * 179.85338 * 23 22 21 25 25 N 1.34438 * 108.07151 * 0.40074 * 24 23 22 26 26 H 0.96991 * 126.82412 * 179.79348 * 25 24 23 27 27 N 1.30711 * 125.52321 * 90.00113 * 22 21 20 28 28 C 1.46057 * 119.62291 * 72.13151 * 17 16 15 29 29 H 0.96999 * 119.99993 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99864 * 0.02562 * 9 7 2 31 31 H 1.09006 * 109.49681 * 312.00682 * 12 10 9 32 32 H 1.09005 * 109.49060 * 72.09223 * 12 10 9 33 33 H 1.08999 * 109.43562 * 162.90753 * 13 12 10 34 34 H 1.08997 * 109.39643 * 43.01332 * 13 12 10 35 35 H 1.08993 * 109.53204 * 196.16782 * 14 13 12 36 36 H 1.08996 * 109.53219 * 75.95762 * 14 13 12 37 37 H 1.09001 * 109.63804 * 354.52549 * 15 14 13 38 38 H 1.09003 * 109.81219 * 234.01186 * 15 14 13 39 39 H 1.09008 * 109.84743 * 170.73638 * 16 15 14 40 40 H 1.08993 * 109.90697 * 49.77868 * 16 15 14 41 41 H 1.09003 * 109.46901 * 300.00170 * 20 18 17 42 42 H 1.08998 * 109.47223 * 60.00093 * 20 18 17 43 43 H 1.08993 * 109.47381 * 299.99896 * 21 20 18 44 44 H 1.09000 * 109.47507 * 60.00107 * 21 20 18 45 45 H 1.07993 * 125.96326 * 180.12189 * 24 23 22 46 46 H 1.09003 * 109.36241 * 126.74152 * 28 17 16 47 47 H 1.08997 * 109.25581 * 7.06892 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 1 3.5732 -3.2081 -0.5963 12 6 5.5128 -2.2575 -0.5898 13 6 6.1589 -3.6178 -0.8662 14 6 6.6540 -4.2262 0.4411 15 6 7.3618 -3.1415 1.2647 16 6 6.5424 -2.8857 2.5386 17 7 5.2943 -2.2185 2.1359 18 6 5.1056 -0.9122 2.4086 19 8 4.0757 -0.3657 2.0747 20 6 6.1742 -0.1307 3.1285 21 6 5.7118 1.3161 3.3119 22 6 6.7802 2.0975 4.0324 23 7 6.8774 2.2398 5.3535 24 6 7.9196 2.9749 5.6454 25 7 8.5148 3.3305 4.4937 26 1 9.3090 3.8785 4.3947 27 7 7.7587 2.7503 3.4622 28 6 4.2613 -2.9799 1.4384 29 1 -0.4850 0.8400 0.0004 30 1 3.8646 -0.3621 -0.0007 31 1 5.4345 -1.6960 -1.5208 32 1 6.1250 -1.7015 0.1204 33 1 6.9999 -3.4882 -1.5474 34 1 5.4236 -4.2822 -1.3199 35 1 7.3532 -5.0341 0.2253 36 1 5.8070 -4.6171 1.0050 37 1 7.4280 -2.2233 0.6811 38 1 8.3632 -3.4770 1.5345 39 1 7.1035 -2.2427 3.2168 40 1 6.3146 -3.8317 3.0296 41 1 6.3573 -0.5798 4.1047 42 1 7.0933 -0.1473 2.5428 43 1 5.5284 1.7654 2.3360 44 1 4.7929 1.3324 3.8979 45 1 8.2425 3.2517 6.6381 46 1 3.3123 -2.8656 1.9623 47 1 4.5405 -4.0334 1.4221 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088291382.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:45 Heat of formation + Delta-G solvation = 96.447894 kcal Electronic energy + Delta-G solvation = -28967.490564 eV Core-core repulsion = 25188.882589 eV Total energy + Delta-G solvation = -3778.607975 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.26740 -40.17171 -37.45263 -34.91122 -34.12706 -33.60992 -32.13215 -31.78640 -30.63855 -29.79899 -27.38010 -26.65487 -24.94740 -23.35510 -22.86813 -22.53753 -20.61153 -20.16237 -19.82772 -18.52764 -17.97304 -17.27740 -16.67749 -15.87203 -15.72014 -15.52802 -15.21466 -15.11684 -14.54768 -13.98774 -13.90780 -13.53384 -13.39225 -13.17627 -12.77789 -12.37942 -12.31678 -12.20277 -12.05159 -11.84508 -11.77841 -11.59834 -11.09074 -11.03373 -10.82849 -10.62641 -10.59138 -10.33268 -10.27770 -10.19664 -10.07781 -9.84818 -9.68549 -9.64520 -9.27182 -9.05401 -8.56966 -8.06795 -6.77797 -5.45494 -2.75182 1.41123 2.46038 2.70977 3.28074 3.47519 3.66114 3.74239 3.86105 3.98368 4.51146 4.73764 4.79292 4.92369 4.97353 4.97548 5.11083 5.19345 5.27724 5.30984 5.41430 5.46379 5.52507 5.60209 5.71469 5.79554 5.82472 5.90048 5.98520 6.04451 6.05322 6.11172 6.17218 6.18413 6.22489 6.34348 6.37564 6.41074 6.58179 6.67713 6.80040 6.82427 6.93545 7.22761 7.91150 7.95784 8.28240 8.72856 8.91940 9.57676 10.32071 10.51526 11.73458 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.009691 B = 0.005520 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.547475 B = 5070.991552 C = 7232.131197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.006 3.994 3 Si 0.878 3.122 4 H -0.300 1.300 5 H -0.302 1.302 6 H -0.248 1.248 7 C -0.221 4.221 8 H 0.081 0.919 9 N -0.726 5.726 10 C 0.171 3.829 11 H 0.058 0.942 12 C -0.138 4.138 13 C -0.114 4.114 14 C -0.128 4.128 15 C -0.147 4.147 16 C 0.107 3.893 17 N -0.609 5.609 18 C 0.489 3.511 19 O -0.467 6.467 20 C -0.128 4.128 21 C -0.016 4.016 22 C 0.238 3.762 23 N -0.539 5.539 24 C 0.257 3.743 25 N -0.489 5.489 26 H 0.440 0.560 27 N -0.313 5.313 28 C 0.091 3.909 29 H 0.253 0.747 30 H 0.365 0.635 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.221 0.779 46 H 0.071 0.929 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.739 -2.281 9.920 25.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.189 4.189 3 Si 0.710 3.290 4 H -0.228 1.228 5 H -0.229 1.229 6 H -0.173 1.173 7 C -0.351 4.351 8 H 0.099 0.901 9 N -0.368 5.368 10 C 0.060 3.940 11 H 0.076 0.924 12 C -0.176 4.176 13 C -0.152 4.152 14 C -0.165 4.165 15 C -0.185 4.185 16 C -0.016 4.016 17 N -0.345 5.345 18 C 0.275 3.725 19 O -0.337 6.337 20 C -0.170 4.170 21 C -0.056 4.056 22 C -0.044 4.044 23 N -0.267 5.267 24 C -0.042 4.042 25 N -0.207 5.207 26 H 0.285 0.715 27 N -0.142 5.142 28 C -0.033 4.033 29 H 0.063 0.937 30 H 0.200 0.800 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.104 0.896 43 H 0.115 0.885 44 H 0.120 0.880 45 H 0.238 0.762 46 H 0.090 0.910 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 22.731 -2.143 9.200 24.616 hybrid contribution 1.361 1.649 0.405 2.176 sum 24.092 -0.494 9.605 25.941 Atomic orbital electron populations 1.69730 1.05343 1.25337 1.59257 1.24503 0.94934 0.97168 1.02245 0.86581 0.81242 0.84591 0.76599 1.22784 1.22890 1.17298 1.18932 0.80905 0.94075 1.41191 0.90087 1.42724 1.03568 1.01605 1.88940 1.20729 0.90593 0.90236 0.92439 0.92372 1.22243 0.97694 0.96634 1.01020 1.21450 0.99723 0.97314 0.96681 1.21891 1.00165 0.97411 0.97036 1.22481 0.98235 1.00516 0.97304 1.21918 0.85695 0.97990 0.96019 1.47935 1.17907 1.09679 1.58944 1.20412 0.88932 0.82246 0.80934 1.91034 1.26804 1.67539 1.48368 1.21576 0.98959 0.94722 1.01715 1.19756 0.93409 0.91770 1.00673 1.24436 0.95276 0.96323 0.88415 1.70468 1.19797 1.21280 1.15200 1.26126 0.90291 0.94055 0.93752 1.48162 1.25786 1.41976 1.04816 0.71496 1.78083 1.08392 1.16652 1.11105 1.22665 0.90763 0.93514 0.96387 0.93718 0.79964 0.92443 0.90965 0.92827 0.91961 0.92735 0.90709 0.90232 0.91906 0.90515 0.91182 0.89239 0.89648 0.88524 0.88001 0.76232 0.91039 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -31.75 13.97 55.49 0.78 -30.98 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 3 Si 0.88 24.35 27.17 -169.99 -4.62 19.73 16 4 H -0.30 -8.32 7.11 56.52 0.40 -7.92 16 5 H -0.30 -8.62 7.11 56.52 0.40 -8.22 16 6 H -0.25 -6.48 5.23 56.52 0.30 -6.19 16 7 C -0.22 -6.53 10.28 -15.06 -0.15 -6.68 16 8 H 0.08 2.55 8.06 -52.49 -0.42 2.12 16 9 N -0.73 -17.83 2.84 -53.00 -0.15 -17.98 16 10 C 0.17 3.29 2.68 -67.50 -0.18 3.11 16 11 H 0.06 1.16 7.84 -51.92 -0.41 0.75 16 12 C -0.14 -2.17 4.92 -26.45 -0.13 -2.30 16 13 C -0.11 -1.39 5.67 -26.95 -0.15 -1.54 16 14 C -0.13 -1.32 5.48 -26.75 -0.15 -1.47 16 15 C -0.15 -1.45 5.60 -26.16 -0.15 -1.60 16 16 C 0.11 1.12 5.83 -3.37 -0.02 1.11 16 17 N -0.61 -9.01 1.72 -172.90 -0.30 -9.31 16 18 C 0.49 8.40 6.85 -10.98 -0.08 8.32 16 19 O -0.47 -10.49 10.27 5.56 0.06 -10.43 16 20 C -0.13 -1.73 4.03 -27.89 -0.11 -1.85 16 21 C -0.02 -0.24 5.13 -27.88 -0.14 -0.39 16 22 C 0.24 3.37 7.39 -156.86 -1.16 2.21 16 23 N -0.54 -6.93 11.19 -11.97 -0.13 -7.06 16 24 C 0.26 2.10 13.13 -90.64 -1.19 0.91 16 25 N -0.49 -4.15 7.45 29.53 0.22 -3.93 16 26 H 0.44 1.93 8.96 -182.34 -1.63 0.29 16 27 N -0.31 -4.18 12.80 32.42 0.41 -3.76 16 28 C 0.09 1.55 4.93 -4.07 -0.02 1.53 16 29 H 0.25 8.19 8.31 -40.82 -0.34 7.85 16 30 H 0.37 9.22 4.38 -40.82 -0.18 9.04 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.12 3.68 -51.93 -0.19 0.93 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.77 7.85 -51.93 -0.41 0.37 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.81 4.49 -51.93 -0.23 0.58 16 37 H 0.08 0.91 5.45 -51.93 -0.28 0.62 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.70 5.98 -51.92 -0.31 0.39 16 40 H 0.07 0.66 7.97 -51.93 -0.41 0.24 16 41 H 0.09 1.07 7.59 -51.93 -0.39 0.68 16 42 H 0.09 1.04 8.01 -51.93 -0.42 0.62 16 43 H 0.10 1.65 8.10 -51.93 -0.42 1.23 16 44 H 0.10 1.69 8.10 -51.93 -0.42 1.27 16 45 H 0.22 0.59 8.06 -52.49 -0.42 0.17 16 46 H 0.07 1.49 8.06 -51.93 -0.42 1.07 16 47 H 0.07 0.96 5.05 -51.93 -0.26 0.70 16 LS Contribution 352.76 15.07 5.32 5.32 Total: -1.00 -39.14 352.76 -10.32 -49.46 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -8.17 Total: 7.49 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -3.73 Total: 1.46 kcal Atomic # 7 Polarization: -73.85 SS G_CDS: 0.83 Total: -73.02 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.06 Total: -10.43 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -4.62 Total: 19.73 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -39.14 -10.32 -49.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088291382.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.907 kcal (2) G-P(sol) polarization free energy of solvation -39.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds