Wall clock time and date at job start Tue Mar 31 2020 04:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00106 * 2 1 4 4 H 1.48500 * 109.47292 * 270.00658 * 3 2 1 5 5 H 1.48503 * 109.47008 * 29.99797 * 3 2 1 6 6 H 1.48497 * 109.47468 * 150.00031 * 3 2 1 7 7 C 1.38813 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99996 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99584 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99987 * 179.97438 * 9 7 2 11 11 H 1.09010 * 109.78754 * 35.49464 * 10 9 7 12 12 C 1.53432 * 109.63529 * 155.98560 * 10 9 7 13 13 C 1.53111 * 109.32361 * 192.04787 * 12 10 9 14 14 C 1.52458 * 109.68324 * 282.97513 * 13 12 10 15 15 C 1.53492 * 109.13424 * 316.06372 * 14 13 12 16 16 C 1.53618 * 108.46063 * 114.21828 * 15 14 13 17 17 N 1.47135 * 107.51720 * 290.23835 * 16 15 14 18 18 C 1.34780 * 120.18785 * 252.15772 * 17 16 15 19 19 O 1.21279 * 119.99775 * 179.97438 * 18 17 16 20 20 C 1.50698 * 120.00098 * 359.97438 * 18 17 16 21 21 C 1.52994 * 109.47146 * 180.02562 * 20 18 17 22 22 C 1.50708 * 109.47302 * 179.97438 * 21 20 18 23 23 N 1.33233 * 125.52838 * 269.69844 * 22 21 20 24 24 C 1.30835 * 109.83319 * 179.85338 * 23 22 21 25 25 N 1.34438 * 108.07151 * 0.40074 * 24 23 22 26 26 H 0.96991 * 126.82412 * 179.79348 * 25 24 23 27 27 N 1.30711 * 125.52321 * 90.00113 * 22 21 20 28 28 C 1.46057 * 119.62291 * 72.13151 * 17 16 15 29 29 H 0.96999 * 119.99993 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99864 * 0.02562 * 9 7 2 31 31 H 1.09006 * 109.49681 * 312.00682 * 12 10 9 32 32 H 1.09005 * 109.49060 * 72.09223 * 12 10 9 33 33 H 1.08999 * 109.43562 * 162.90753 * 13 12 10 34 34 H 1.08997 * 109.39643 * 43.01332 * 13 12 10 35 35 H 1.08993 * 109.53204 * 196.16782 * 14 13 12 36 36 H 1.08996 * 109.53219 * 75.95762 * 14 13 12 37 37 H 1.09001 * 109.63804 * 354.52549 * 15 14 13 38 38 H 1.09003 * 109.81219 * 234.01186 * 15 14 13 39 39 H 1.09008 * 109.84743 * 170.73638 * 16 15 14 40 40 H 1.08993 * 109.90697 * 49.77868 * 16 15 14 41 41 H 1.09003 * 109.46901 * 300.00170 * 20 18 17 42 42 H 1.08998 * 109.47223 * 60.00093 * 20 18 17 43 43 H 1.08993 * 109.47381 * 299.99896 * 21 20 18 44 44 H 1.09000 * 109.47507 * 60.00107 * 21 20 18 45 45 H 1.07993 * 125.96326 * 180.12189 * 24 23 22 46 46 H 1.09003 * 109.36241 * 126.74152 * 28 17 16 47 47 H 1.08997 * 109.25581 * 7.06892 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 1 3.5732 -3.2081 -0.5963 12 6 5.5128 -2.2575 -0.5898 13 6 6.1589 -3.6178 -0.8662 14 6 6.6540 -4.2262 0.4411 15 6 7.3618 -3.1415 1.2647 16 6 6.5424 -2.8857 2.5386 17 7 5.2943 -2.2185 2.1359 18 6 5.1056 -0.9122 2.4086 19 8 4.0757 -0.3657 2.0747 20 6 6.1742 -0.1307 3.1285 21 6 5.7118 1.3161 3.3119 22 6 6.7802 2.0975 4.0324 23 7 6.8774 2.2398 5.3535 24 6 7.9196 2.9749 5.6454 25 7 8.5148 3.3305 4.4937 26 1 9.3090 3.8785 4.3947 27 7 7.7587 2.7503 3.4622 28 6 4.2613 -2.9799 1.4384 29 1 -0.4850 0.8400 0.0004 30 1 3.8646 -0.3621 -0.0007 31 1 5.4345 -1.6960 -1.5208 32 1 6.1250 -1.7015 0.1204 33 1 6.9999 -3.4882 -1.5474 34 1 5.4236 -4.2822 -1.3199 35 1 7.3532 -5.0341 0.2253 36 1 5.8070 -4.6171 1.0050 37 1 7.4280 -2.2233 0.6811 38 1 8.3632 -3.4770 1.5345 39 1 7.1035 -2.2427 3.2168 40 1 6.3146 -3.8317 3.0296 41 1 6.3573 -0.5798 4.1047 42 1 7.0933 -0.1473 2.5428 43 1 5.5284 1.7654 2.3360 44 1 4.7929 1.3324 3.8979 45 1 8.2425 3.2517 6.6381 46 1 3.3123 -2.8656 1.9623 47 1 4.5405 -4.0334 1.4221 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088291382.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:44 Heat of formation + Delta-G solvation = 69.332132 kcal Electronic energy + Delta-G solvation = -28968.666392 eV Core-core repulsion = 25188.882589 eV Total energy + Delta-G solvation = -3779.783803 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.08375 -41.44082 -38.72667 -36.55518 -35.19620 -34.90130 -33.74821 -32.96756 -31.65550 -31.47397 -28.68915 -27.88846 -26.14456 -24.96941 -23.88902 -23.62299 -21.97558 -21.22386 -20.97529 -19.48286 -19.29544 -19.16300 -17.82547 -17.16485 -16.88814 -16.64022 -16.36943 -16.24271 -15.96505 -15.56334 -15.28754 -14.85311 -14.55182 -14.40172 -14.25212 -13.91002 -13.65540 -13.39322 -13.22022 -13.09823 -12.99749 -12.95235 -12.75848 -12.50634 -12.29738 -12.08520 -11.78407 -11.73534 -11.64307 -11.44284 -11.18869 -11.09274 -11.06402 -10.93351 -10.82949 -10.71256 -10.31100 -9.54852 -8.81696 -7.89715 -5.12164 0.64107 1.37389 1.44150 1.64344 1.80006 1.85946 1.98464 2.31259 2.64716 3.16846 3.44205 3.63083 3.71310 3.81608 4.01107 4.04468 4.06732 4.16816 4.24848 4.29046 4.30635 4.37304 4.50696 4.57562 4.58371 4.70694 4.78419 4.88527 4.93636 4.95291 4.98207 5.04048 5.15397 5.19822 5.24635 5.29891 5.34509 5.46534 5.49496 5.57772 5.69109 5.85574 5.92770 6.28328 6.35164 6.72432 7.10942 7.27827 7.61921 8.11816 8.26569 9.33038 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.009691 B = 0.005520 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.547475 B = 5070.991552 C = 7232.131197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.997 5.997 2 C -0.065 4.065 3 Si 0.940 3.060 4 H -0.297 1.297 5 H -0.316 1.316 6 H -0.229 1.229 7 C -0.189 4.189 8 H 0.051 0.949 9 N -0.727 5.727 10 C 0.160 3.840 11 H 0.046 0.954 12 C -0.128 4.128 13 C -0.109 4.109 14 C -0.125 4.125 15 C -0.142 4.142 16 C 0.102 3.898 17 N -0.602 5.602 18 C 0.483 3.517 19 O -0.532 6.532 20 C -0.109 4.109 21 C -0.011 4.011 22 C 0.225 3.775 23 N -0.579 5.579 24 C 0.278 3.722 25 N -0.475 5.475 26 H 0.459 0.541 27 N -0.344 5.344 28 C 0.105 3.895 29 H 0.248 0.752 30 H 0.364 0.636 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.112 0.888 42 H 0.106 0.894 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.276 0.724 46 H 0.024 0.976 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.938 -3.099 11.557 31.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.651 5.651 2 C -0.255 4.255 3 Si 0.771 3.229 4 H -0.225 1.225 5 H -0.244 1.244 6 H -0.153 1.153 7 C -0.321 4.321 8 H 0.069 0.931 9 N -0.370 5.370 10 C 0.051 3.949 11 H 0.064 0.936 12 C -0.166 4.166 13 C -0.147 4.147 14 C -0.162 4.162 15 C -0.180 4.180 16 C -0.020 4.020 17 N -0.337 5.337 18 C 0.270 3.730 19 O -0.407 6.407 20 C -0.150 4.150 21 C -0.052 4.052 22 C -0.057 4.057 23 N -0.309 5.309 24 C -0.020 4.020 25 N -0.194 5.194 26 H 0.308 0.692 27 N -0.174 5.174 28 C -0.021 4.021 29 H 0.056 0.944 30 H 0.199 0.801 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.109 0.891 41 H 0.130 0.870 42 H 0.125 0.875 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.292 0.708 46 H 0.042 0.958 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 28.076 -3.017 10.849 30.250 hybrid contribution -0.141 1.793 -0.038 1.799 sum 27.935 -1.224 10.811 29.979 Atomic orbital electron populations 1.69891 1.07041 1.25598 1.62579 1.25165 0.95641 1.00497 1.04175 0.85590 0.80616 0.80259 0.76427 1.22542 1.24406 1.15280 1.18943 0.83192 0.92543 1.37409 0.93079 1.42748 1.01783 1.03707 1.88771 1.21055 0.92070 0.87664 0.94152 0.93616 1.22159 0.95420 0.99054 0.99940 1.21417 0.99929 0.94830 0.98473 1.21878 1.00507 0.98157 0.95646 1.22432 0.99568 0.99680 0.96302 1.22299 0.83618 0.98968 0.97106 1.48009 1.18878 1.09075 1.57718 1.21105 0.88772 0.82894 0.80208 1.90992 1.29451 1.69085 1.51178 1.21451 0.97967 0.93050 1.02510 1.19507 0.93447 0.93173 0.99071 1.24054 0.95416 0.97116 0.89147 1.70420 1.22245 1.23575 1.14615 1.27110 0.88217 0.91371 0.95266 1.48071 1.25881 1.41441 1.04040 0.69235 1.77963 1.08965 1.17321 1.13150 1.22271 0.89952 0.95819 0.94031 0.94369 0.80130 0.94251 0.90274 0.91104 0.92329 0.90196 0.91328 0.91628 0.88695 0.88395 0.89149 0.87014 0.87530 0.91158 0.90381 0.70833 0.95763 0.87424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -1.00 -70.41 13.97 21.65 0.30 -70.11 16 2 C -0.07 -4.27 5.50 84.86 0.47 -3.81 16 3 Si 0.94 53.18 27.17 68.60 1.86 55.04 16 4 H -0.30 -16.47 7.11 99.48 0.71 -15.76 16 5 H -0.32 -18.42 7.11 99.48 0.71 -17.72 16 6 H -0.23 -12.14 5.23 99.48 0.52 -11.62 16 7 C -0.19 -11.74 10.28 84.03 0.86 -10.88 16 8 H 0.05 3.42 8.06 -2.91 -0.02 3.39 16 9 N -0.73 -36.93 2.84 -321.60 -0.91 -37.85 16 10 C 0.16 6.20 2.68 45.27 0.12 6.32 16 11 H 0.05 1.87 7.84 -2.38 -0.02 1.86 16 12 C -0.13 -3.87 4.92 30.78 0.15 -3.72 16 13 C -0.11 -2.34 5.67 30.45 0.17 -2.16 16 14 C -0.12 -2.02 5.48 30.58 0.17 -1.85 16 15 C -0.14 -2.09 5.60 30.97 0.17 -1.92 16 16 C 0.10 1.69 5.83 86.47 0.50 2.20 16 17 N -0.60 -16.84 1.72 -819.32 -1.41 -18.25 16 18 C 0.48 16.37 6.85 87.66 0.60 16.97 16 19 O -0.53 -24.64 10.27 -3.03 -0.03 -24.67 16 20 C -0.11 -2.78 4.03 29.85 0.12 -2.66 16 21 C -0.01 -0.35 5.13 29.85 0.15 -0.20 16 22 C 0.23 6.15 7.39 138.64 1.03 7.18 16 23 N -0.58 -13.72 11.19 -191.80 -2.15 -15.87 16 24 C 0.28 3.53 13.13 180.36 2.37 5.90 16 25 N -0.47 -6.56 7.45 -60.49 -0.45 -7.01 16 26 H 0.46 2.41 8.96 -213.11 -1.91 0.50 16 27 N -0.34 -8.58 12.80 -51.33 -0.66 -9.24 16 28 C 0.10 3.52 4.93 86.60 0.43 3.94 16 29 H 0.25 16.92 8.31 -92.71 -0.77 16.15 16 30 H 0.36 18.82 4.38 -92.71 -0.41 18.41 16 31 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.08 2.31 3.68 -2.38 -0.01 2.30 16 33 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.06 1.32 7.85 -2.39 -0.02 1.30 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 1.19 4.49 -2.39 -0.01 1.18 16 37 H 0.07 1.21 5.45 -2.39 -0.01 1.20 16 38 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.10 1.28 5.98 -2.38 -0.01 1.27 16 40 H 0.09 1.23 7.97 -2.39 -0.02 1.21 16 41 H 0.11 2.37 7.59 -2.39 -0.02 2.35 16 42 H 0.11 2.29 8.01 -2.39 -0.02 2.27 16 43 H 0.07 2.50 8.10 -2.39 -0.02 2.48 16 44 H 0.08 2.73 8.10 -2.39 -0.02 2.71 16 45 H 0.28 -0.04 8.06 -2.91 -0.02 -0.07 16 46 H 0.02 1.04 8.06 -2.39 -0.02 1.03 16 47 H 0.11 2.79 5.05 -2.39 -0.01 2.77 16 Total: -1.00 -93.34 352.76 2.38 -90.96 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: -1.49 Total: 21.68 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 7.31 Total: 15.31 kcal Atomic # 7 Polarization: -153.05 SS G_CDS: -5.28 Total: -158.32 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.03 Total: -24.67 kcal Atomic # 14 Polarization: 53.18 SS G_CDS: 1.86 Total: 55.04 kcal Total: -93.34 2.38 -90.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088291382.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.292 kcal (2) G-P(sol) polarization free energy of solvation -93.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds