Wall clock time and date at job start Tue Mar 31 2020 06:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36888 * 126.39445 * 2 1 4 4 C 1.34664 * 106.81745 * 179.97438 * 3 2 1 5 5 N 1.34130 * 108.02156 * 359.77902 * 4 3 2 6 6 C 1.30503 * 109.25558 * 0.37242 * 5 4 3 7 7 C 1.50695 * 125.65058 * 179.89276 * 6 5 4 8 8 H 1.09005 * 109.78754 * 174.21955 * 7 6 5 9 9 C 1.53242 * 109.62934 * 53.73370 * 7 6 5 10 10 N 1.46897 * 109.33875 * 186.45999 * 9 7 6 11 11 C 1.46896 * 111.27282 * 63.10516 * 10 9 7 12 12 C 1.53696 * 109.25584 * 296.75570 * 11 10 9 13 13 N 1.47079 * 108.27807 * 54.08265 * 12 11 10 14 14 C 1.34774 * 120.88696 * 128.75531 * 13 12 11 15 15 O 1.21282 * 119.99975 * 174.05239 * 14 13 12 16 16 C 1.50694 * 119.99829 * 354.04952 * 14 13 12 17 17 H 1.09007 * 109.47156 * 40.00171 * 16 14 13 18 18 N 1.46901 * 109.47043 * 160.00026 * 16 14 13 19 19 C 1.53004 * 109.47315 * 280.00278 * 16 14 13 20 20 C 1.53000 * 109.46979 * 175.00037 * 19 16 14 21 21 C 1.50696 * 109.46910 * 180.02562 * 20 19 16 22 22 H 1.08003 * 120.00451 * 359.97438 * 21 20 19 23 23 C 1.37877 * 120.00191 * 180.02562 * 21 20 19 24 24 N 1.31522 * 119.99797 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00337 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47487 * 89.99536 * 25 23 21 27 27 H 1.48501 * 109.47462 * 209.99833 * 25 23 21 28 28 H 1.48499 * 109.46977 * 329.99967 * 25 23 21 29 29 H 1.08999 * 109.46944 * 270.01749 * 1 2 3 30 30 H 1.08996 * 109.47231 * 30.02260 * 1 2 3 31 31 H 1.09005 * 109.46765 * 150.02491 * 1 2 3 32 32 H 1.08001 * 126.58765 * 359.94987 * 3 2 1 33 33 H 1.08001 * 125.99073 * 180.02562 * 4 3 2 34 34 H 1.08992 * 109.49384 * 306.42121 * 9 7 6 35 35 H 1.09004 * 109.49058 * 66.47370 * 9 7 6 36 36 H 1.00903 * 111.00273 * 298.95725 * 10 9 7 37 37 H 1.08997 * 109.49208 * 56.85227 * 11 10 9 38 38 H 1.08995 * 109.49840 * 176.90984 * 11 10 9 39 39 H 1.08992 * 109.80218 * 294.41706 * 12 11 10 40 40 H 1.09002 * 109.70505 * 173.68465 * 12 11 10 41 41 H 1.00896 * 111.00172 * 296.04603 * 18 16 14 42 42 H 1.00898 * 111.00116 * 60.00872 * 18 16 14 43 43 H 1.09001 * 109.46993 * 55.00037 * 19 16 14 44 44 H 1.09001 * 109.46734 * 294.99699 * 19 16 14 45 45 H 1.09001 * 109.47111 * 299.99431 * 20 19 16 46 46 H 1.08999 * 109.47570 * 59.99735 * 20 19 16 47 47 H 0.97004 * 119.99651 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1019 0.0000 4 6 3.5460 0.6507 0.0006 5 7 3.5096 -0.6901 0.0058 6 6 2.2664 -1.0869 0.0005 7 6 1.8020 -2.5205 0.0015 8 1 0.7169 -2.5569 0.0995 9 6 2.4497 -3.2707 1.1702 10 7 2.1172 -4.6984 1.0760 11 6 2.6696 -5.2947 -0.1476 12 6 2.0251 -4.6266 -1.3726 13 7 2.2068 -3.1719 -1.2536 14 6 2.7252 -2.4540 -2.2696 15 8 2.7683 -1.2441 -2.1970 16 6 3.2512 -3.1546 -3.4957 17 1 2.5891 -3.9811 -3.7541 18 7 3.3091 -2.2051 -4.6151 19 6 4.6543 -3.6948 -3.2120 20 6 5.1382 -4.5122 -4.4114 21 6 6.5199 -5.0448 -4.1316 22 1 7.0046 -4.8222 -3.1925 23 6 7.1658 -5.8154 -5.0750 24 7 6.5758 -6.0861 -6.2189 25 14 8.8788 -6.4750 -4.7286 26 1 8.7746 -7.8046 -4.0755 27 1 9.6257 -6.6077 -6.0052 28 1 9.5979 -5.5370 -3.8296 29 1 -0.3633 0.0003 1.0277 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8903 -0.5135 32 1 1.9611 2.1346 -0.0008 33 1 4.4368 1.2613 0.0011 34 1 3.5316 -3.1457 1.1277 35 1 2.0741 -2.8707 2.1121 36 1 1.1198 -4.8417 1.1295 37 1 3.7485 -5.1415 -0.1718 38 1 2.4535 -6.3629 -0.1614 39 1 0.9613 -4.8614 -1.4043 40 1 2.5087 -4.9827 -2.2823 41 1 2.3860 -1.8829 -4.8642 42 1 3.9172 -1.4292 -4.4001 43 1 4.6269 -4.3300 -2.3266 44 1 5.3364 -2.8620 -3.0408 45 1 4.4561 -5.3450 -4.5826 46 1 5.1656 -3.8770 -5.2967 47 1 7.0301 -6.6286 -6.8825 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326584787.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:06 Heat of formation + Delta-G solvation = 54.892678 kcal Electronic energy + Delta-G solvation = -28927.441368 eV Core-core repulsion = 25147.031424 eV Total energy + Delta-G solvation = -3780.409944 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.11212 -40.15881 -37.88451 -35.30057 -33.96504 -33.61496 -32.84147 -32.23045 -30.06726 -28.73109 -27.18594 -26.80586 -25.81725 -24.14243 -23.35060 -21.96483 -21.06053 -20.60907 -19.91725 -18.72267 -17.46936 -16.87339 -16.39947 -16.10536 -15.70773 -15.53915 -15.33703 -14.99719 -14.90058 -14.40017 -14.13195 -14.02360 -13.68321 -13.44051 -13.31781 -13.23417 -12.89619 -12.84270 -12.59748 -12.26818 -11.99986 -11.75298 -11.56168 -11.36465 -11.30952 -10.85673 -10.60789 -10.49847 -10.14475 -9.76553 -9.67630 -9.49717 -9.36555 -9.25317 -8.96354 -8.46574 -8.30219 -8.22034 -7.79808 -5.90677 -3.92332 2.08194 2.71781 2.85098 2.95205 3.37729 3.44147 3.48728 3.52125 3.93048 4.27543 4.46375 4.52811 4.55018 4.62846 4.82322 4.86234 4.93301 4.96207 4.98992 5.06008 5.08313 5.17033 5.36730 5.44988 5.48833 5.56101 5.63333 5.82891 5.86635 5.91281 5.93868 6.32797 6.38248 6.49523 6.65984 6.74200 6.96062 7.08189 7.13258 7.24783 7.35196 7.51757 7.78134 7.80273 7.99142 8.15883 8.32094 8.35738 8.52513 9.15560 9.70863 11.20229 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.015809 B = 0.003729 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.707036 B = 7506.724468 C = 8073.950453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.456 5.456 3 C -0.067 4.067 4 C -0.012 4.012 5 N -0.467 5.467 6 C 0.241 3.759 7 C 0.194 3.806 8 H 0.074 0.926 9 C 0.059 3.941 10 N -0.679 5.679 11 C 0.040 3.960 12 C 0.067 3.933 13 N -0.612 5.612 14 C 0.487 3.513 15 O -0.519 6.519 16 C 0.081 3.919 17 H 0.093 0.907 18 N -0.806 5.806 19 C -0.091 4.091 20 C 0.033 3.967 21 C -0.519 4.519 22 H 0.052 0.948 23 C 0.058 3.942 24 N -0.894 5.894 25 Si 0.888 3.112 26 H -0.281 1.281 27 H -0.287 1.287 28 H -0.274 1.274 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.166 0.834 33 H 0.162 0.838 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.338 0.662 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.107 0.893 41 H 0.330 0.670 42 H 0.348 0.652 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.011 0.989 46 H 0.033 0.967 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.794 8.616 14.836 24.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.141 5.141 3 C -0.199 4.199 4 C -0.160 4.160 5 N -0.187 5.187 6 C -0.021 4.021 7 C 0.087 3.913 8 H 0.092 0.908 9 C -0.072 4.072 10 N -0.306 5.306 11 C -0.090 4.090 12 C -0.057 4.057 13 N -0.349 5.349 14 C 0.275 3.725 15 O -0.392 6.392 16 C -0.034 4.034 17 H 0.111 0.889 18 N -0.334 5.334 19 C -0.130 4.130 20 C -0.004 4.004 21 C -0.558 4.558 22 H 0.070 0.930 23 C -0.143 4.143 24 N -0.533 5.533 25 Si 0.716 3.284 26 H -0.208 1.208 27 H -0.213 1.213 28 H -0.199 1.199 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.183 0.817 33 H 0.179 0.821 34 H 0.114 0.886 35 H 0.102 0.898 36 H 0.155 0.845 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.085 0.915 40 H 0.125 0.875 41 H 0.142 0.858 42 H 0.162 0.838 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.029 0.971 46 H 0.052 0.948 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.343 7.859 14.644 23.309 hybrid contribution -0.936 1.352 -0.031 1.644 sum -17.279 9.211 14.613 24.433 Atomic orbital electron populations 1.21913 0.77848 1.04213 1.02801 1.44962 1.06651 1.06562 1.55924 1.22398 0.91439 0.91794 1.14251 1.22060 0.95938 0.91234 1.06811 1.70111 1.17916 1.11776 1.18925 1.22114 0.86322 0.89072 1.04583 1.20054 0.97626 0.86079 0.87537 0.90787 1.22387 1.03001 0.86520 0.95304 1.60649 1.18274 1.13413 1.38248 1.22578 1.01260 0.98962 0.86207 1.22740 1.00995 0.79509 1.02458 1.48347 1.64726 1.08109 1.13717 1.22699 0.75991 0.88408 0.85451 1.90681 1.55294 1.14113 1.79138 1.21847 1.00663 0.95276 0.85642 0.88891 1.59021 1.15391 1.21646 1.37293 1.21630 0.90435 0.99639 1.01266 1.19005 0.94996 0.93998 0.92419 1.21277 1.01415 1.31275 1.01820 0.92955 1.24981 0.97693 0.96482 0.95126 1.69981 1.37781 1.38748 1.06819 0.86660 0.84887 0.79277 0.77566 1.20755 1.21320 1.19929 0.90907 0.89876 0.90383 0.81702 0.82106 0.88563 0.89785 0.84482 0.89226 0.88899 0.91514 0.87515 0.85830 0.83791 0.92868 0.92804 0.97077 0.94822 0.93167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.57 10.80 59.85 0.65 1.22 16 2 N -0.46 -5.54 3.13 -121.28 -0.38 -5.92 16 3 C -0.07 -0.84 11.58 -16.56 -0.19 -1.03 16 4 C -0.01 -0.17 11.64 -17.81 -0.21 -0.38 16 5 N -0.47 -7.96 9.66 -10.82 -0.10 -8.07 16 6 C 0.24 3.44 3.95 -155.42 -0.61 2.83 16 7 C 0.19 2.29 3.37 -68.64 -0.23 2.06 16 8 H 0.07 0.70 6.84 -51.93 -0.36 0.35 16 9 C 0.06 0.65 5.97 -3.70 -0.02 0.63 16 10 N -0.68 -6.48 6.85 -113.25 -0.78 -7.26 16 11 C 0.04 0.42 6.72 -3.46 -0.02 0.39 16 12 C 0.07 0.73 6.09 -3.36 -0.02 0.71 16 13 N -0.61 -8.06 3.00 -165.96 -0.50 -8.55 16 14 C 0.49 7.96 6.73 -10.99 -0.07 7.89 16 15 O -0.52 -9.59 12.10 5.56 0.07 -9.52 16 16 C 0.08 1.41 2.29 -68.86 -0.16 1.25 16 17 H 0.09 1.51 6.58 -51.92 -0.34 1.17 16 18 N -0.81 -14.14 8.44 -5.65 -0.05 -14.18 16 19 C -0.09 -1.91 4.54 -26.73 -0.12 -2.03 16 20 C 0.03 0.85 4.86 -27.88 -0.14 0.71 16 21 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 22 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 23 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 24 N -0.89 -27.08 13.29 55.43 0.74 -26.35 16 25 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.56 7.15 -51.93 -0.37 0.19 16 32 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.16 2.11 8.06 -52.49 -0.42 1.69 16 34 H 0.10 1.37 8.03 -51.93 -0.42 0.95 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.34 2.45 8.83 -39.29 -0.35 2.11 16 37 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.11 1.31 5.11 -51.93 -0.27 1.04 16 41 H 0.33 5.06 9.06 -39.29 -0.36 4.70 16 42 H 0.35 6.38 8.58 -39.29 -0.34 6.04 16 43 H 0.05 1.06 7.41 -51.93 -0.38 0.68 16 44 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.03 0.95 7.75 -51.93 -0.40 0.55 16 47 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 373.10 15.07 5.62 5.62 Total: -1.00 -35.60 373.10 -9.31 -44.91 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -7.35 Total: 11.65 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -1.56 Total: 0.67 kcal Atomic # 7 Polarization: -69.26 SS G_CDS: -1.07 Total: -70.33 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.07 Total: -9.52 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.60 -9.31 -44.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326584787.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.802 kcal (2) G-P(sol) polarization free energy of solvation -35.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds