Wall clock time and date at job start Tue Mar 31 2020 06:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36888 * 126.39445 * 2 1 4 4 C 1.34664 * 106.81745 * 179.97438 * 3 2 1 5 5 N 1.34130 * 108.02156 * 359.77902 * 4 3 2 6 6 C 1.30503 * 109.25558 * 0.37242 * 5 4 3 7 7 C 1.50695 * 125.65058 * 179.89276 * 6 5 4 8 8 H 1.09005 * 109.78754 * 174.21955 * 7 6 5 9 9 C 1.53242 * 109.62934 * 53.73370 * 7 6 5 10 10 N 1.46897 * 109.33875 * 186.45999 * 9 7 6 11 11 C 1.46896 * 111.27282 * 63.10516 * 10 9 7 12 12 C 1.53696 * 109.25584 * 296.75570 * 11 10 9 13 13 N 1.47079 * 108.27807 * 54.08265 * 12 11 10 14 14 C 1.34774 * 120.88696 * 128.75531 * 13 12 11 15 15 O 1.21282 * 119.99975 * 174.05239 * 14 13 12 16 16 C 1.50694 * 119.99829 * 354.04952 * 14 13 12 17 17 H 1.09007 * 109.47156 * 40.00171 * 16 14 13 18 18 N 1.46901 * 109.47043 * 160.00026 * 16 14 13 19 19 C 1.53004 * 109.47315 * 280.00278 * 16 14 13 20 20 C 1.53000 * 109.46979 * 175.00037 * 19 16 14 21 21 C 1.50696 * 109.46910 * 180.02562 * 20 19 16 22 22 H 1.08003 * 120.00451 * 359.97438 * 21 20 19 23 23 C 1.37877 * 120.00191 * 180.02562 * 21 20 19 24 24 N 1.31522 * 119.99797 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00337 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47487 * 89.99536 * 25 23 21 27 27 H 1.48501 * 109.47462 * 209.99833 * 25 23 21 28 28 H 1.48499 * 109.46977 * 329.99967 * 25 23 21 29 29 H 1.08999 * 109.46944 * 270.01749 * 1 2 3 30 30 H 1.08996 * 109.47231 * 30.02260 * 1 2 3 31 31 H 1.09005 * 109.46765 * 150.02491 * 1 2 3 32 32 H 1.08001 * 126.58765 * 359.94987 * 3 2 1 33 33 H 1.08001 * 125.99073 * 180.02562 * 4 3 2 34 34 H 1.08992 * 109.49384 * 306.42121 * 9 7 6 35 35 H 1.09004 * 109.49058 * 66.47370 * 9 7 6 36 36 H 1.00903 * 111.00273 * 298.95725 * 10 9 7 37 37 H 1.08997 * 109.49208 * 56.85227 * 11 10 9 38 38 H 1.08995 * 109.49840 * 176.90984 * 11 10 9 39 39 H 1.08992 * 109.80218 * 294.41706 * 12 11 10 40 40 H 1.09002 * 109.70505 * 173.68465 * 12 11 10 41 41 H 1.00896 * 111.00172 * 296.04603 * 18 16 14 42 42 H 1.00898 * 111.00116 * 60.00872 * 18 16 14 43 43 H 1.09001 * 109.46993 * 55.00037 * 19 16 14 44 44 H 1.09001 * 109.46734 * 294.99699 * 19 16 14 45 45 H 1.09001 * 109.47111 * 299.99431 * 20 19 16 46 46 H 1.08999 * 109.47570 * 59.99735 * 20 19 16 47 47 H 0.97004 * 119.99651 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1019 0.0000 4 6 3.5460 0.6507 0.0006 5 7 3.5096 -0.6901 0.0058 6 6 2.2664 -1.0869 0.0005 7 6 1.8020 -2.5205 0.0015 8 1 0.7169 -2.5569 0.0995 9 6 2.4497 -3.2707 1.1702 10 7 2.1172 -4.6984 1.0760 11 6 2.6696 -5.2947 -0.1476 12 6 2.0251 -4.6266 -1.3726 13 7 2.2068 -3.1719 -1.2536 14 6 2.7252 -2.4540 -2.2696 15 8 2.7683 -1.2441 -2.1970 16 6 3.2512 -3.1546 -3.4957 17 1 2.5891 -3.9811 -3.7541 18 7 3.3091 -2.2051 -4.6151 19 6 4.6543 -3.6948 -3.2120 20 6 5.1382 -4.5122 -4.4114 21 6 6.5199 -5.0448 -4.1316 22 1 7.0046 -4.8222 -3.1925 23 6 7.1658 -5.8154 -5.0750 24 7 6.5758 -6.0861 -6.2189 25 14 8.8788 -6.4750 -4.7286 26 1 8.7746 -7.8046 -4.0755 27 1 9.6257 -6.6077 -6.0052 28 1 9.5979 -5.5370 -3.8296 29 1 -0.3633 0.0003 1.0277 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8903 -0.5135 32 1 1.9611 2.1346 -0.0008 33 1 4.4368 1.2613 0.0011 34 1 3.5316 -3.1457 1.1277 35 1 2.0741 -2.8707 2.1121 36 1 1.1198 -4.8417 1.1295 37 1 3.7485 -5.1415 -0.1718 38 1 2.4535 -6.3629 -0.1614 39 1 0.9613 -4.8614 -1.4043 40 1 2.5087 -4.9827 -2.2823 41 1 2.3860 -1.8829 -4.8642 42 1 3.9172 -1.4292 -4.4001 43 1 4.6269 -4.3300 -2.3266 44 1 5.3364 -2.8620 -3.0408 45 1 4.4561 -5.3450 -4.5826 46 1 5.1656 -3.8770 -5.2967 47 1 7.0301 -6.6286 -6.8825 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326584787.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:04 Heat of formation + Delta-G solvation = 26.349454 kcal Electronic energy + Delta-G solvation = -28928.679095 eV Core-core repulsion = 25147.031424 eV Total energy + Delta-G solvation = -3781.647671 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.08811 -41.28882 -38.96139 -36.89759 -34.89658 -34.82171 -34.60558 -33.22416 -31.96112 -29.68719 -28.46003 -27.79287 -27.11486 -25.49201 -24.63652 -22.97766 -22.44163 -21.86695 -21.15764 -19.85625 -18.68579 -18.26607 -17.84167 -17.38158 -16.95696 -16.64830 -16.40728 -16.32645 -15.99278 -15.77184 -15.32258 -15.03551 -14.82650 -14.71647 -14.37994 -14.27808 -14.21677 -13.85201 -13.67836 -13.63924 -13.46710 -13.31448 -12.80149 -12.67686 -12.50037 -12.39711 -12.23541 -12.12059 -11.77792 -11.62430 -11.27051 -11.03527 -10.72167 -10.49901 -10.43574 -10.25098 -9.73818 -9.25727 -8.86560 -8.14523 -6.24559 1.12012 1.40739 1.42280 1.52274 1.54818 1.85490 2.01290 2.44192 2.46883 3.09334 3.18240 3.34942 3.55757 3.65598 3.66755 3.83672 3.93789 3.99064 4.05833 4.10507 4.17013 4.28409 4.32584 4.37574 4.53664 4.58439 4.61851 4.69637 4.76911 4.88072 4.90723 4.97953 5.08330 5.21191 5.35886 5.43601 5.55331 5.80546 5.81885 5.95761 5.98226 6.02128 6.24045 6.29930 6.39942 6.44323 6.48156 6.92406 7.10848 7.35005 7.43389 8.96519 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.015809 B = 0.003729 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.707036 B = 7506.724468 C = 8073.950453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.456 5.456 3 C -0.053 4.053 4 C -0.054 4.054 5 N -0.516 5.516 6 C 0.228 3.772 7 C 0.194 3.806 8 H 0.110 0.890 9 C 0.069 3.931 10 N -0.673 5.673 11 C 0.044 3.956 12 C 0.065 3.935 13 N -0.607 5.607 14 C 0.487 3.513 15 O -0.541 6.541 16 C 0.090 3.910 17 H 0.107 0.893 18 N -0.816 5.816 19 C -0.072 4.072 20 C 0.045 3.955 21 C -0.543 4.543 22 H 0.049 0.951 23 C 0.006 3.994 24 N -0.927 5.927 25 Si 0.957 3.043 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.271 1.271 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.199 0.801 33 H 0.161 0.839 34 H 0.057 0.943 35 H 0.103 0.897 36 H 0.358 0.642 37 H 0.055 0.945 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.344 0.656 42 H 0.341 0.659 43 H 0.059 0.941 44 H 0.028 0.972 45 H -0.002 1.002 46 H 0.003 0.997 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.025 8.115 16.305 27.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.139 5.139 3 C -0.186 4.186 4 C -0.202 4.202 5 N -0.237 5.237 6 C -0.035 4.035 7 C 0.088 3.912 8 H 0.127 0.873 9 C -0.062 4.062 10 N -0.302 5.302 11 C -0.086 4.086 12 C -0.059 4.059 13 N -0.343 5.343 14 C 0.274 3.726 15 O -0.417 6.417 16 C -0.026 4.026 17 H 0.125 0.875 18 N -0.344 5.344 19 C -0.110 4.110 20 C 0.008 3.992 21 C -0.581 4.581 22 H 0.067 0.933 23 C -0.192 4.192 24 N -0.568 5.568 25 Si 0.782 3.218 26 H -0.193 1.193 27 H -0.207 1.207 28 H -0.196 1.196 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.102 0.898 32 H 0.216 0.784 33 H 0.179 0.821 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.178 0.822 37 H 0.074 0.926 38 H 0.134 0.866 39 H 0.123 0.877 40 H 0.108 0.892 41 H 0.157 0.843 42 H 0.154 0.846 43 H 0.078 0.922 44 H 0.046 0.954 45 H 0.016 0.984 46 H 0.022 0.978 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.634 7.330 16.145 25.722 hybrid contribution -0.282 1.523 -0.465 1.617 sum -18.916 8.853 15.680 26.116 Atomic orbital electron populations 1.22257 0.74949 1.05307 1.04871 1.45240 1.08407 1.05731 1.54557 1.22858 0.90698 0.93278 1.11796 1.22326 0.97501 0.91161 1.09256 1.70009 1.20233 1.12994 1.20472 1.22411 0.86100 0.90406 1.04566 1.20344 0.99438 0.84848 0.86585 0.87253 1.22221 1.00670 0.87403 0.95948 1.60590 1.19788 1.12256 1.37579 1.22508 0.99320 1.00329 0.86426 1.22936 1.03169 0.77911 1.01839 1.48330 1.63489 1.09001 1.13432 1.22245 0.76544 0.88066 0.85774 1.90676 1.56413 1.14947 1.79628 1.21598 0.98492 0.95773 0.86728 0.87500 1.58990 1.16291 1.21468 1.37677 1.21276 0.92311 0.98076 0.99360 1.18782 0.94001 0.93367 0.93070 1.21665 1.02825 1.31733 1.01916 0.93260 1.25842 1.01926 0.96624 0.94806 1.70099 1.39601 1.39346 1.07709 0.85572 0.79626 0.78980 0.77615 1.19310 1.20717 1.19587 0.88286 0.88405 0.89766 0.78436 0.82117 0.92460 0.87927 0.82221 0.92614 0.86580 0.87684 0.89189 0.84285 0.84556 0.92224 0.95354 0.98380 0.97850 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.78 10.80 127.77 1.38 2.16 16 2 N -0.46 -10.15 3.13 -537.61 -1.68 -11.83 16 3 C -0.05 -1.26 11.58 83.08 0.96 -0.30 16 4 C -0.05 -1.67 11.64 83.52 0.97 -0.70 16 5 N -0.52 -18.06 9.66 -188.14 -1.82 -19.88 16 6 C 0.23 6.30 3.95 138.13 0.55 6.85 16 7 C 0.19 4.20 3.37 44.21 0.15 4.35 16 8 H 0.11 1.62 6.84 -2.38 -0.02 1.60 16 9 C 0.07 1.43 5.97 86.38 0.52 1.94 16 10 N -0.67 -11.24 6.85 -512.22 -3.51 -14.75 16 11 C 0.04 0.85 6.72 86.54 0.58 1.44 16 12 C 0.06 1.27 6.09 86.50 0.53 1.80 16 13 N -0.61 -15.20 3.00 -797.36 -2.39 -17.59 16 14 C 0.49 15.86 6.73 87.66 0.59 16.45 16 15 O -0.54 -20.11 12.10 -3.04 -0.04 -20.14 16 16 C 0.09 3.15 2.29 44.17 0.10 3.25 16 17 H 0.11 3.45 6.58 -2.38 -0.02 3.43 16 18 N -0.82 -29.32 8.44 -171.79 -1.45 -30.77 16 19 C -0.07 -3.13 4.54 30.60 0.14 -2.99 16 20 C 0.04 2.41 4.86 29.85 0.15 2.55 16 21 C -0.54 -31.86 9.11 25.60 0.23 -31.62 16 22 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 23 C 0.01 0.36 5.46 84.65 0.46 0.82 16 24 N -0.93 -57.01 13.29 21.45 0.28 -56.73 16 25 Si 0.96 45.49 29.54 68.60 2.03 47.52 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 27 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 28 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 29 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 0.88 7.15 -2.38 -0.02 0.87 16 32 H 0.20 3.12 8.06 -2.91 -0.02 3.09 16 33 H 0.16 4.53 8.06 -2.91 -0.02 4.51 16 34 H 0.06 1.66 8.03 -2.39 -0.02 1.64 16 35 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.36 3.76 8.83 -89.69 -0.79 2.97 16 37 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 38 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.09 2.11 5.11 -2.39 -0.01 2.09 16 41 H 0.34 10.55 9.06 -89.70 -0.81 9.74 16 42 H 0.34 13.05 8.58 -89.70 -0.77 12.28 16 43 H 0.06 2.48 7.41 -2.39 -0.02 2.46 16 44 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 46 H 0.00 0.18 7.75 -2.39 -0.02 0.16 16 47 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -80.33 373.10 -2.64 -82.97 By element: Atomic # 1 Polarization: 36.57 SS G_CDS: -1.37 Total: 35.21 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: 7.30 Total: 5.99 kcal Atomic # 7 Polarization: -140.97 SS G_CDS: -10.57 Total: -151.54 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.04 Total: -20.14 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -80.33 -2.64 -82.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326584787.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.324 kcal (2) G-P(sol) polarization free energy of solvation -80.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds