Wall clock time and date at job start Tue Mar 31 2020 05:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46981 * 2 1 4 4 C 1.52994 * 109.47130 * 239.99439 * 2 1 3 5 5 N 1.46500 * 109.47088 * 65.00235 * 4 2 1 6 6 C 1.36933 * 120.00219 * 179.97438 * 5 4 2 7 7 H 1.08003 * 120.00064 * 359.97438 * 6 5 4 8 8 C 1.38820 * 120.00149 * 180.02562 * 6 5 4 9 9 N 1.31612 * 119.99808 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99934 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47020 * 59.99612 * 10 8 6 12 12 H 1.48498 * 109.47301 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47032 * 299.99857 * 10 8 6 14 14 C 1.53002 * 109.46892 * 119.99625 * 2 1 3 15 15 N 1.46510 * 109.47146 * 295.00118 * 14 2 1 16 16 C 1.34771 * 119.99815 * 180.02562 * 15 14 2 17 17 O 1.21289 * 120.00067 * 0.02562 * 16 15 14 18 18 C 1.50702 * 120.00079 * 179.97438 * 16 15 14 19 19 H 1.09002 * 109.45725 * 59.96288 * 18 16 15 20 20 C 1.53112 * 109.45467 * 300.00016 * 18 16 15 21 21 C 1.53427 * 109.55881 * 169.91354 * 20 18 16 22 22 C 1.50551 * 108.35707 * 49.82119 * 21 20 18 23 23 N 1.32911 * 129.17113 * 163.35409 * 22 21 20 24 24 N 1.29015 * 108.63666 * 180.23885 * 23 22 21 25 25 N 1.29110 * 110.25912 * 359.97438 * 24 23 22 26 26 C 1.46499 * 126.00228 * 179.97438 * 25 24 23 27 27 C 1.34386 * 107.98460 * 359.93129 * 25 24 23 28 28 C 1.50541 * 129.25214 * 180.12813 * 27 25 24 29 29 H 1.08999 * 109.46644 * 60.00352 * 1 2 3 30 30 H 1.08997 * 109.47141 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46867 * 300.00759 * 1 2 3 32 32 H 1.09005 * 109.47145 * 184.99854 * 4 2 1 33 33 H 1.08996 * 109.47153 * 305.00340 * 4 2 1 34 34 H 0.97004 * 120.00109 * 359.97438 * 5 4 2 35 35 H 0.97002 * 119.99949 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.46880 * 175.00282 * 14 2 1 37 37 H 1.09001 * 109.47235 * 54.99949 * 14 2 1 38 38 H 0.97001 * 119.99709 * 359.97438 * 15 14 2 39 39 H 1.09002 * 109.45470 * 289.93839 * 20 18 16 40 40 H 1.09000 * 109.45531 * 49.89788 * 20 18 16 41 41 H 1.08996 * 109.68841 * 169.51311 * 21 20 18 42 42 H 1.08991 * 109.69309 * 290.09488 * 21 20 18 43 43 H 1.09001 * 109.47165 * 270.00289 * 26 25 24 44 44 H 1.08999 * 109.47646 * 30.00617 * 26 25 24 45 45 H 1.09008 * 109.46730 * 150.00443 * 26 25 24 46 46 H 1.08993 * 109.69338 * 43.89039 * 28 27 25 47 47 H 1.08997 * 109.69430 * 283.30372 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 1.6525 0.0352 -2.4423 6 6 2.0020 -0.4205 -3.6854 7 1 2.5637 -1.3374 -3.7862 8 6 1.6352 0.2967 -4.8160 9 7 0.9512 1.4143 -4.6931 10 14 2.1127 -0.3246 -6.5117 11 1 1.5202 -1.6685 -6.7314 12 1 1.6050 0.6144 -7.5440 13 1 3.5919 -0.4140 -6.6078 14 6 2.0400 -0.7212 1.2493 15 7 1.6524 0.0355 2.4425 16 6 1.9963 -0.4128 3.6660 17 8 2.6272 -1.4425 3.7793 18 6 1.5981 0.3658 4.8933 19 1 0.5118 0.4445 4.9367 20 6 2.2088 1.7683 4.8278 21 6 1.6080 2.6424 5.9364 22 6 1.6989 1.8884 7.2364 23 7 1.5880 2.3434 8.4803 24 7 1.7369 1.3547 9.2956 25 7 1.9418 0.2615 8.6400 26 6 2.1554 -1.0653 9.2233 27 6 1.9237 0.5545 7.3286 28 6 2.1079 -0.3586 6.1460 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 3.1264 -0.7995 -1.2055 33 1 1.6054 -1.7198 -1.2950 34 1 1.1483 0.8589 -2.3518 35 1 0.6946 1.9152 -5.4832 36 1 3.1263 -0.7994 1.2057 37 1 1.6053 -1.7197 1.2953 38 1 1.1488 0.8596 2.3517 39 1 3.2883 1.7009 4.9635 40 1 1.9921 2.2137 3.8569 41 1 2.1678 3.5745 6.0131 42 1 0.5641 2.8579 5.7091 43 1 3.2208 -1.2201 9.3938 44 1 1.6218 -1.1358 10.1712 45 1 1.7824 -1.8274 8.5389 46 1 1.5385 -1.2755 6.2977 47 1 3.1648 -0.5973 6.0273 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753629992.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:16 Heat of formation + Delta-G solvation = 53.381183 kcal Electronic energy + Delta-G solvation = -26542.325837 eV Core-core repulsion = 22761.850349 eV Total energy + Delta-G solvation = -3780.475488 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.74774 -40.25773 -37.36204 -36.61734 -35.26024 -34.45387 -32.59220 -30.99160 -30.85514 -29.94312 -28.24986 -26.75392 -25.66434 -24.44397 -23.61211 -22.38562 -21.77767 -20.84859 -20.19225 -19.59869 -17.84461 -17.34348 -17.07484 -16.67997 -16.19310 -15.68631 -15.12835 -14.76099 -14.59211 -14.27991 -14.25958 -13.95155 -13.90067 -13.72238 -13.59178 -13.24636 -13.06277 -12.70652 -12.54414 -12.43496 -12.32529 -12.08562 -11.88793 -11.55575 -11.42044 -11.09540 -10.93923 -10.90348 -10.73132 -10.60976 -10.46505 -10.32039 -10.13370 -9.90384 -9.68497 -9.19644 -9.11494 -8.89588 -6.94987 -5.79224 -3.07711 1.20858 1.94561 2.21303 2.44409 2.98642 3.42958 3.47405 3.48322 3.76731 4.02362 4.17229 4.32472 4.36342 4.48018 4.50036 4.57207 4.73459 4.77741 4.82346 5.00686 5.03846 5.05045 5.15937 5.17744 5.33525 5.42670 5.47241 5.55365 5.58608 5.64459 5.74046 5.76374 5.90078 5.91284 5.93507 6.06687 6.19091 6.19965 6.34198 6.40693 6.61392 6.73317 6.82605 7.36378 7.67828 8.05338 8.17928 8.39904 9.51153 10.08199 10.42876 11.43627 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.035723 B = 0.001920 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.614984 B =14581.831036 C =15079.313666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 H 0.077 0.923 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.240 4.240 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.126 3.874 15 N -0.721 5.721 16 C 0.518 3.482 17 O -0.543 6.543 18 C -0.103 4.103 19 H 0.106 0.894 20 C -0.112 4.112 21 C -0.031 4.031 22 C -0.021 4.021 23 N -0.261 5.261 24 N -0.099 5.099 25 N -0.283 5.283 26 C 0.079 3.921 27 C -0.016 4.016 28 C -0.024 4.024 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.042 0.958 32 H 0.021 0.979 33 H 0.022 0.978 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.402 0.598 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.087 0.913 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.162 -2.335 26.944 27.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.002 3.998 15 N -0.372 5.372 16 C 0.304 3.696 17 O -0.420 6.420 18 C -0.125 4.125 19 H 0.124 0.876 20 C -0.151 4.151 21 C -0.070 4.070 22 C -0.161 4.161 23 N -0.126 5.126 24 N -0.077 5.077 25 N -0.075 5.075 26 C -0.062 4.062 27 C -0.150 4.150 28 C -0.064 4.064 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.038 0.962 33 H 0.040 0.960 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.237 0.763 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.112 0.888 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.105 0.895 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.541 -2.571 28.335 28.456 hybrid contribution -0.060 -0.337 -1.849 1.880 sum 0.481 -2.908 26.486 26.650 Atomic orbital electron populations 1.21795 0.94653 1.01931 1.01528 1.21556 0.96711 1.00527 0.94172 0.90470 1.20573 0.96603 0.94206 0.85406 1.42325 1.66925 1.27704 1.00566 1.19188 1.28798 1.05479 0.83672 0.91218 1.24738 1.00993 0.97397 0.97873 1.69640 1.43441 1.16565 1.28637 0.86253 0.78028 0.77702 0.84112 1.21276 1.21689 1.21262 1.21445 1.00195 0.95264 0.82871 1.46065 1.57396 1.27874 1.05895 1.20318 0.79377 0.85456 0.84486 1.90714 1.39946 1.24620 1.86726 1.21332 1.02876 0.95894 0.92349 0.87626 1.21679 1.01334 0.92541 0.99521 1.19946 1.02629 0.97542 0.86907 1.21696 1.07560 0.91656 0.95204 1.74803 1.16439 1.21478 0.99836 1.78596 1.20601 0.87702 1.20758 1.46828 1.45748 1.10016 1.04941 1.22309 1.04585 0.78088 1.01267 1.21822 1.09374 0.97324 0.86523 1.19906 1.03803 0.95502 0.87142 0.91121 0.92845 0.93893 0.96152 0.96043 0.78197 0.93460 0.91262 0.91303 0.76343 0.90457 0.89624 0.89133 0.89449 0.88840 0.87896 0.88140 0.89487 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.94 37.16 0.33 -1.60 16 2 C -0.11 -1.57 2.46 -90.62 -0.22 -1.79 16 3 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 4 C 0.16 3.05 5.65 -4.04 -0.02 3.02 16 5 N -0.73 -17.81 5.33 -59.91 -0.32 -18.13 16 6 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 7 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 8 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -27.70 13.06 55.49 0.72 -26.97 16 10 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 C 0.13 1.54 5.06 -4.04 -0.02 1.52 16 15 N -0.72 -6.93 5.10 -60.28 -0.31 -7.24 16 16 C 0.52 5.24 7.15 -10.99 -0.08 5.16 16 17 O -0.54 -7.51 15.82 5.55 0.09 -7.42 16 18 C -0.10 -0.72 2.50 -91.49 -0.23 -0.95 16 19 H 0.11 0.61 8.12 -51.93 -0.42 0.19 16 20 C -0.11 -0.70 5.17 -26.45 -0.14 -0.83 16 21 C -0.03 -0.21 6.30 -27.73 -0.17 -0.39 16 22 C -0.02 -0.21 7.11 -83.14 -0.59 -0.80 16 23 N -0.26 -3.29 12.40 33.15 0.41 -2.88 16 24 N -0.10 -1.17 13.19 60.35 0.80 -0.37 16 25 N -0.28 -2.47 3.73 -64.00 -0.24 -2.71 16 26 C 0.08 0.30 11.27 59.85 0.67 0.97 16 27 C -0.02 -0.14 6.76 -82.50 -0.56 -0.70 16 28 C -0.02 -0.18 4.71 -27.74 -0.13 -0.31 16 29 H 0.07 1.16 7.18 -51.93 -0.37 0.78 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.04 0.45 7.18 -51.93 -0.37 0.08 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.38 9.72 6.85 -40.82 -0.28 9.44 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.40 2.97 6.99 -40.82 -0.29 2.69 16 39 H 0.08 0.53 8.12 -51.93 -0.42 0.11 16 40 H 0.09 0.42 7.31 -51.93 -0.38 0.04 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.10 0.20 7.71 -51.92 -0.40 -0.20 16 46 H 0.09 0.56 7.87 -51.93 -0.41 0.15 16 47 H 0.10 0.78 7.78 -51.93 -0.40 0.38 16 LS Contribution 380.74 15.07 5.74 5.74 Total: -1.00 -35.46 380.74 -7.06 -42.52 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -7.52 Total: 4.27 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -1.40 Total: -3.95 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: 1.07 Total: -58.30 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: 0.09 Total: -7.42 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.46 -7.06 -42.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753629992.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.900 kcal (2) G-P(sol) polarization free energy of solvation -35.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds