Wall clock time and date at job start Tue Mar 31 2020 05:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47194 * 2 1 4 4 C 1.52999 * 109.46991 * 120.00842 * 2 1 3 5 5 N 1.46504 * 109.46785 * 294.99542 * 4 2 1 6 6 C 1.36940 * 120.00031 * 180.02562 * 5 4 2 7 7 H 1.08002 * 119.99761 * 359.97438 * 6 5 4 8 8 C 1.38810 * 120.00005 * 180.02562 * 6 5 4 9 9 N 1.31620 * 119.99975 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 120.00106 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.46753 * 90.00218 * 10 8 6 12 12 H 1.48494 * 109.47191 * 210.00129 * 10 8 6 13 13 H 1.48496 * 109.46998 * 330.00717 * 10 8 6 14 14 C 1.53006 * 109.47127 * 240.00158 * 2 1 3 15 15 N 1.46498 * 109.46687 * 65.00113 * 14 2 1 16 16 C 1.34782 * 119.99965 * 180.02562 * 15 14 2 17 17 O 1.21287 * 119.99775 * 359.97438 * 16 15 14 18 18 C 1.50693 * 120.00376 * 180.02562 * 16 15 14 19 19 H 1.09001 * 109.45820 * 300.00120 * 18 16 15 20 20 C 1.53112 * 109.45849 * 59.96307 * 18 16 15 21 21 C 1.53421 * 109.58497 * 190.08143 * 20 18 16 22 22 C 1.50594 * 108.33137 * 310.17628 * 21 20 18 23 23 N 1.32909 * 129.16129 * 196.55632 * 22 21 20 24 24 N 1.29025 * 108.63839 * 179.89048 * 23 22 21 25 25 N 1.29118 * 110.25675 * 0.02562 * 24 23 22 26 26 C 1.46494 * 126.00544 * 180.02562 * 25 24 23 27 27 C 1.34399 * 107.98458 * 0.06176 * 25 24 23 28 28 C 1.50524 * 129.25995 * 179.86925 * 27 25 24 29 29 H 1.09001 * 109.47289 * 59.99796 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 299.99712 * 1 2 3 32 32 H 1.08998 * 109.47903 * 54.99362 * 4 2 1 33 33 H 1.09002 * 109.47016 * 175.00128 * 4 2 1 34 34 H 0.96994 * 120.00002 * 0.02562 * 5 4 2 35 35 H 0.97004 * 120.00079 * 179.97438 * 9 8 6 36 36 H 1.08992 * 109.47046 * 185.00032 * 14 2 1 37 37 H 1.08997 * 109.47395 * 305.00572 * 14 2 1 38 38 H 0.97004 * 120.00552 * 359.97438 * 15 14 2 39 39 H 1.09008 * 109.44905 * 310.10877 * 20 18 16 40 40 H 1.08999 * 109.45472 * 70.06526 * 20 18 16 41 41 H 1.09003 * 109.69233 * 69.88073 * 21 20 18 42 42 H 1.09000 * 109.69295 * 190.42655 * 21 20 18 43 43 H 1.09001 * 109.47271 * 269.97252 * 26 25 24 44 44 H 1.08999 * 109.47537 * 29.97801 * 26 25 24 45 45 H 1.09007 * 109.46817 * 149.97695 * 26 25 24 46 46 H 1.08998 * 109.70292 * 76.80553 * 28 27 25 47 47 H 1.08995 * 109.67734 * 316.21028 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 1.2491 5 7 1.6524 0.0351 2.4424 6 6 2.0019 -0.4206 3.6855 7 1 2.5628 -1.3380 3.7863 8 6 1.6342 0.2960 4.8161 9 7 1.9706 -0.1418 6.0109 10 14 0.6634 1.8823 4.6417 11 1 -0.7900 1.5783 4.6657 12 1 0.9972 2.7931 5.7661 13 1 1.0110 2.5365 3.3547 14 6 2.0400 -0.7212 -1.2493 15 7 1.6524 0.0355 -2.4423 16 6 1.9955 -0.4134 -3.6660 17 8 2.6255 -1.4436 -3.7794 18 6 1.5974 0.3652 -4.8933 19 1 0.5111 0.4442 -4.9366 20 6 2.2084 1.7676 -4.8280 21 6 1.6081 2.6422 -5.9365 22 6 1.6991 1.8877 -7.2366 23 7 1.5871 2.3424 -8.4805 24 7 1.7339 1.3533 -9.2958 25 7 1.9383 0.2599 -8.6401 26 6 2.1497 -1.0673 -9.2232 27 6 1.9225 0.5534 -7.3287 28 6 2.1071 -0.3592 -6.1460 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6053 -1.7199 1.2951 33 1 3.1263 -0.7996 1.2055 34 1 1.1483 0.8588 2.3518 35 1 1.7140 0.3591 6.8010 36 1 3.1262 -0.7995 -1.2056 37 1 1.6053 -1.7197 -1.2953 38 1 1.1482 0.8592 -2.3517 39 1 1.9918 2.2131 -3.8569 40 1 3.2877 1.7000 -4.9639 41 1 0.5640 2.8578 -5.7093 42 1 2.1676 3.5745 -6.0122 43 1 1.1895 -1.5698 -9.3402 44 1 2.6271 -0.9643 -10.1976 45 1 2.7897 -1.6554 -8.5653 46 1 3.1640 -0.5977 -6.0273 47 1 1.5377 -1.2761 -6.2975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753629994.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:23 Heat of formation + Delta-G solvation = 57.742553 kcal Electronic energy + Delta-G solvation = -26626.393816 eV Core-core repulsion = 22846.107452 eV Total energy + Delta-G solvation = -3780.286364 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.78223 -40.32628 -37.47314 -36.72642 -35.29551 -34.59937 -32.62921 -31.04941 -30.98547 -30.34857 -28.28141 -26.89342 -25.94133 -24.49251 -23.63913 -22.04776 -21.80915 -20.91392 -20.33073 -19.74243 -17.98723 -17.49875 -17.27957 -16.76668 -16.29300 -15.76758 -15.21041 -14.81770 -14.59663 -14.34822 -14.29170 -14.12541 -13.94437 -13.74088 -13.64231 -13.31871 -13.23336 -12.75042 -12.57999 -12.49359 -12.46914 -12.23987 -11.93042 -11.62464 -11.49209 -11.46898 -11.09960 -10.95129 -10.82100 -10.67874 -10.64035 -10.35312 -10.17373 -9.95977 -9.61427 -9.24566 -9.18679 -8.93635 -7.26985 -5.79720 -3.15679 1.16829 1.91116 2.17392 2.38030 2.91201 3.33048 3.35123 3.41941 3.71612 3.97685 4.14972 4.27696 4.31393 4.43285 4.45725 4.55392 4.67755 4.74459 4.75779 4.86074 4.97700 4.98728 5.02799 5.13082 5.17410 5.36844 5.42057 5.50305 5.53028 5.59805 5.60644 5.67670 5.69172 5.80218 5.82711 5.85825 6.02232 6.15643 6.17108 6.30002 6.39309 6.60401 6.69656 7.28123 7.96264 7.98466 8.14150 8.39038 9.17819 9.89839 10.09267 11.38633 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.030315 B = 0.002073 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.413706 B =13503.773993 C =14151.749373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 H 0.076 0.924 4 C 0.165 3.835 5 N -0.754 5.754 6 C -0.245 4.245 7 H 0.090 0.910 8 C 0.003 3.997 9 N -0.933 5.933 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.126 3.874 15 N -0.722 5.722 16 C 0.519 3.481 17 O -0.541 6.541 18 C -0.102 4.102 19 H 0.106 0.894 20 C -0.112 4.112 21 C -0.031 4.031 22 C -0.021 4.021 23 N -0.261 5.261 24 N -0.098 5.098 25 N -0.283 5.283 26 C 0.078 3.922 27 C -0.016 4.016 28 C -0.025 4.025 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.031 0.969 33 H 0.029 0.971 34 H 0.361 0.639 35 H 0.260 0.740 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.401 0.599 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.103 0.897 45 H 0.101 0.899 46 H 0.098 0.902 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.988 1.013 -30.214 30.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 H 0.095 0.905 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.374 4.374 7 H 0.108 0.892 8 C -0.192 4.192 9 N -0.581 5.581 10 Si 0.715 3.285 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.003 3.997 15 N -0.374 5.374 16 C 0.304 3.696 17 O -0.418 6.418 18 C -0.124 4.124 19 H 0.124 0.876 20 C -0.151 4.151 21 C -0.070 4.070 22 C -0.161 4.161 23 N -0.126 5.126 24 N -0.076 5.076 25 N -0.075 5.075 26 C -0.063 4.063 27 C -0.150 4.150 28 C -0.064 4.064 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.194 0.806 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.236 0.764 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.122 0.878 45 H 0.119 0.881 46 H 0.116 0.884 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.570 0.721 -31.561 31.608 hybrid contribution -0.849 0.854 0.953 1.536 sum -2.418 1.575 -30.607 30.743 Atomic orbital electron populations 1.21817 0.94756 1.02286 1.01243 1.21609 0.96627 1.00593 0.94579 0.90526 1.20552 0.97209 0.94241 0.84314 1.42682 1.67880 1.27108 1.02344 1.19059 1.29589 1.07083 0.81718 0.89183 1.24686 1.00806 0.98630 0.95113 1.69702 1.51203 1.40289 0.96936 0.86543 0.80425 0.84597 0.76912 1.21067 1.21705 1.20390 1.21420 1.00377 0.95291 0.82652 1.46058 1.57526 1.27889 1.05919 1.20320 0.79364 0.85468 0.84452 1.90721 1.39835 1.24518 1.86693 1.21327 1.02866 0.95877 0.92351 0.87635 1.21678 1.01383 0.92547 0.99466 1.19950 1.02590 0.97538 0.86931 1.21696 1.07602 0.91654 0.95194 1.74807 1.16466 1.21461 0.99830 1.78604 1.20565 0.87681 1.20747 1.46839 1.45745 1.10005 1.04931 1.22316 1.04496 0.78082 1.01397 1.21817 1.09412 0.97272 0.86533 1.19904 1.03811 0.95577 0.87122 0.93612 0.92352 0.91836 0.95131 0.95276 0.80630 0.93036 0.91045 0.91091 0.76423 0.89711 0.90417 0.89496 0.89134 0.88869 0.87847 0.88070 0.88401 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.94 37.16 0.33 -1.42 16 2 C -0.11 -1.49 2.46 -90.62 -0.22 -1.71 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 4 C 0.16 2.95 5.65 -4.04 -0.02 2.93 16 5 N -0.75 -17.14 5.13 -59.91 -0.31 -17.45 16 6 C -0.24 -6.81 10.47 -15.06 -0.16 -6.96 16 7 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 8 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 9 N -0.93 -29.04 13.97 55.49 0.78 -28.27 16 10 Si 0.88 21.56 27.74 -169.99 -4.71 16.84 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 13 H -0.28 -6.28 6.52 56.52 0.37 -5.91 16 14 C 0.13 1.44 5.07 -4.04 -0.02 1.41 16 15 N -0.72 -6.37 5.10 -60.30 -0.31 -6.68 16 16 C 0.52 4.92 7.15 -10.99 -0.08 4.84 16 17 O -0.54 -7.18 15.82 5.55 0.09 -7.10 16 18 C -0.10 -0.67 2.50 -91.50 -0.23 -0.90 16 19 H 0.11 0.56 8.12 -51.93 -0.42 0.13 16 20 C -0.11 -0.64 5.17 -26.46 -0.14 -0.77 16 21 C -0.03 -0.20 6.30 -27.72 -0.17 -0.37 16 22 C -0.02 -0.20 7.11 -83.12 -0.59 -0.79 16 23 N -0.26 -3.21 12.40 33.16 0.41 -2.80 16 24 N -0.10 -1.13 13.19 60.35 0.80 -0.33 16 25 N -0.28 -2.38 3.73 -64.01 -0.24 -2.62 16 26 C 0.08 0.28 11.27 59.84 0.67 0.95 16 27 C -0.02 -0.14 6.76 -82.50 -0.56 -0.69 16 28 C -0.02 -0.17 4.68 -27.75 -0.13 -0.30 16 29 H 0.04 0.42 7.18 -51.93 -0.37 0.05 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.90 7.18 -51.93 -0.37 0.53 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.36 7.91 4.71 -40.82 -0.19 7.71 16 35 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.40 2.61 6.99 -40.82 -0.29 2.32 16 39 H 0.08 0.36 7.31 -51.92 -0.38 -0.02 16 40 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 41 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 44 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.10 0.19 7.96 -51.93 -0.41 -0.22 16 46 H 0.10 0.74 7.78 -51.93 -0.40 0.33 16 47 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 378.12 15.07 5.70 5.70 Total: -1.00 -36.53 378.12 -6.72 -43.24 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -7.50 Total: 3.25 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -1.41 Total: -3.79 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 1.13 Total: -58.15 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: 0.09 Total: -7.10 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.71 Total: 16.84 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.53 -6.72 -43.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753629994.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.986 kcal (2) G-P(sol) polarization free energy of solvation -36.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds