Wall clock time and date at job start Tue Mar 31 2020 05:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46819 * 2 1 4 4 C 1.53005 * 109.47559 * 119.99918 * 2 1 3 5 5 N 1.46500 * 109.47013 * 295.00607 * 4 2 1 6 6 C 1.36934 * 119.99756 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00143 * 359.97438 * 6 5 4 8 8 C 1.38809 * 120.00017 * 179.97438 * 6 5 4 9 9 N 1.31616 * 119.99932 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00167 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47380 * 59.99542 * 10 8 6 12 12 H 1.48498 * 109.47404 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.47294 * 299.99905 * 10 8 6 14 14 C 1.53002 * 109.47320 * 240.00579 * 2 1 3 15 15 N 1.46494 * 109.47001 * 64.99504 * 14 2 1 16 16 C 1.34784 * 119.99635 * 180.02562 * 15 14 2 17 17 O 1.21279 * 119.99925 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.99961 * 180.02562 * 16 15 14 19 19 H 1.09000 * 109.46100 * 59.96271 * 18 16 15 20 20 C 1.53112 * 109.45568 * 300.00154 * 18 16 15 21 21 C 1.53428 * 109.57397 * 169.90774 * 20 18 16 22 22 C 1.50597 * 108.33740 * 49.81571 * 21 20 18 23 23 N 1.32903 * 129.16481 * 163.48393 * 22 21 20 24 24 N 1.29016 * 108.63581 * 180.14209 * 23 22 21 25 25 N 1.29111 * 110.26097 * 359.97021 * 24 23 22 26 26 C 1.46500 * 126.00622 * 179.91526 * 25 24 23 27 27 C 1.34397 * 107.98022 * 359.94249 * 25 24 23 28 28 C 1.50539 * 129.24921 * 180.23183 * 27 25 24 29 29 H 1.09008 * 109.47216 * 299.99675 * 1 2 3 30 30 H 1.08995 * 109.47420 * 60.00028 * 1 2 3 31 31 H 1.09006 * 109.46819 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46652 * 55.00052 * 4 2 1 33 33 H 1.08990 * 109.47271 * 175.00001 * 4 2 1 34 34 H 0.96997 * 120.00203 * 359.97438 * 5 4 2 35 35 H 0.97008 * 120.00144 * 180.02562 * 9 8 6 36 36 H 1.09005 * 109.46767 * 304.99570 * 14 2 1 37 37 H 1.09002 * 109.47113 * 184.99910 * 14 2 1 38 38 H 0.96995 * 120.00292 * 0.27801 * 15 14 2 39 39 H 1.09004 * 109.45334 * 289.93501 * 20 18 16 40 40 H 1.08998 * 109.45802 * 49.89263 * 20 18 16 41 41 H 1.08999 * 109.68693 * 169.52798 * 21 20 18 42 42 H 1.08998 * 109.69111 * 290.10216 * 21 20 18 43 43 H 1.08995 * 109.46677 * 90.03351 * 26 25 24 44 44 H 1.08997 * 109.46823 * 210.02542 * 26 25 24 45 45 H 1.08997 * 109.47531 * 330.02884 * 26 25 24 46 46 H 1.08998 * 109.69336 * 43.76471 * 28 27 25 47 47 H 1.09001 * 109.69408 * 283.17916 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 1.6524 0.0353 2.4424 6 6 2.0020 -0.4203 3.6855 7 1 2.5632 -1.3375 3.7864 8 6 1.6352 0.2968 4.8160 9 7 0.9518 1.4149 4.6931 10 14 2.1115 -0.3251 6.5118 11 1 3.5906 -0.4155 6.6086 12 1 1.6039 0.6140 7.5441 13 1 1.5181 -1.6687 6.7311 14 6 2.0400 -0.7211 -1.2493 15 7 1.6524 0.0355 -2.4423 16 6 1.9955 -0.4134 -3.6660 17 8 2.6256 -1.4434 -3.7793 18 6 1.5973 0.3652 -4.8933 19 1 2.0322 1.3637 -4.8469 20 6 0.0714 0.4760 -4.9541 21 6 -0.3284 1.4719 -6.0506 22 6 0.4083 1.1080 -7.3127 23 7 0.1663 1.4846 -8.5641 24 7 1.0421 0.9358 -9.3364 25 7 1.8559 0.2102 -8.6449 26 6 2.9794 -0.5667 -9.1744 27 6 1.4907 0.2924 -7.3541 28 6 2.1101 -0.3575 -6.1458 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6054 -1.7198 1.2951 33 1 3.1263 -0.7994 1.2056 34 1 1.1488 0.8593 2.3518 35 1 0.6958 1.9162 5.4831 36 1 1.6054 -1.7197 -1.2952 37 1 3.1263 -0.7993 -1.2056 38 1 1.1519 0.8614 -2.3515 39 1 -0.3549 -0.5018 -5.1788 40 1 -0.3060 0.8242 -3.9927 41 1 -1.4031 1.4158 -6.2235 42 1 -0.0572 2.4825 -5.7455 43 1 3.8769 0.0517 -9.1822 44 1 3.1458 -1.4405 -8.5445 45 1 2.7515 -0.8892 -10.1903 46 1 3.1955 -0.2740 -6.1996 47 1 1.8235 -1.4085 -6.1066 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753629995.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:26 Heat of formation + Delta-G solvation = 53.354724 kcal Electronic energy + Delta-G solvation = -26557.811454 eV Core-core repulsion = 22777.334819 eV Total energy + Delta-G solvation = -3780.476635 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.74777 -40.25961 -37.35868 -36.62110 -35.25818 -34.45479 -32.59050 -30.99345 -30.85609 -29.94594 -28.24701 -26.75007 -25.66296 -24.44219 -23.61932 -22.38547 -21.78046 -20.84506 -20.21994 -19.56663 -17.85687 -17.32458 -17.07103 -16.69773 -16.21930 -15.61704 -15.15106 -14.82545 -14.56412 -14.28189 -14.23944 -13.98865 -13.83946 -13.70726 -13.59954 -13.28373 -13.07078 -12.69136 -12.55082 -12.41631 -12.34614 -12.09295 -11.87650 -11.56633 -11.42608 -11.09328 -10.93294 -10.90857 -10.73439 -10.60631 -10.46394 -10.31680 -10.13479 -9.90386 -9.68524 -9.19837 -9.11476 -8.89650 -6.94998 -5.79247 -3.07788 1.20476 1.94584 2.21223 2.44447 2.98657 3.42891 3.47361 3.48265 3.76078 4.02307 4.18853 4.33114 4.35918 4.47326 4.49292 4.57148 4.73310 4.78700 4.82862 5.00416 5.03304 5.04586 5.15856 5.18589 5.33728 5.41972 5.46459 5.55359 5.58041 5.64245 5.73688 5.76441 5.89834 5.91681 5.93454 6.06756 6.19083 6.20033 6.34394 6.40847 6.61649 6.73420 6.82691 7.36383 7.67782 8.05331 8.17789 8.39872 9.51124 10.08164 10.42846 11.43580 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.036799 B = 0.001918 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.700444 B =14592.149009 C =15147.630237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.240 4.240 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.126 3.874 15 N -0.721 5.721 16 C 0.518 3.482 17 O -0.543 6.543 18 C -0.103 4.103 19 H 0.106 0.894 20 C -0.112 4.112 21 C -0.031 4.031 22 C -0.021 4.021 23 N -0.261 5.261 24 N -0.098 5.098 25 N -0.284 5.284 26 C 0.078 3.922 27 C -0.016 4.016 28 C -0.024 4.024 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.022 0.978 33 H 0.020 0.980 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.402 0.598 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.101 0.899 45 H 0.103 0.897 46 H 0.087 0.913 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.127 -1.793 -26.899 26.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.002 3.998 15 N -0.372 5.372 16 C 0.304 3.696 17 O -0.420 6.420 18 C -0.125 4.125 19 H 0.124 0.876 20 C -0.150 4.150 21 C -0.070 4.070 22 C -0.161 4.161 23 N -0.126 5.126 24 N -0.076 5.076 25 N -0.075 5.075 26 C -0.063 4.063 27 C -0.150 4.150 28 C -0.064 4.064 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.040 0.960 33 H 0.038 0.962 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.237 0.763 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.111 0.889 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.106 0.894 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.300 -2.152 -28.302 28.413 hybrid contribution 0.368 -0.068 1.875 1.912 sum 1.669 -2.221 -26.426 26.572 Atomic orbital electron populations 1.21793 0.94605 1.01955 1.01530 1.21556 0.96756 1.00497 0.94168 0.90520 1.20574 0.96587 0.94221 0.85408 1.42324 1.66947 1.27683 1.00566 1.19186 1.28806 1.05465 0.83673 0.91218 1.24737 1.00992 0.97402 0.97872 1.69643 1.43480 1.16529 1.28636 0.86254 0.78014 0.77712 0.84115 1.21273 1.21690 1.21268 1.21442 1.00158 0.95299 0.82875 1.46063 1.57539 1.27744 1.05888 1.20317 0.79312 0.85519 0.84478 1.90711 1.40062 1.24486 1.86739 1.21332 0.98048 1.00753 0.92318 0.87606 1.21675 0.92813 1.00887 0.99665 1.19956 0.99836 0.99519 0.87709 1.21702 0.97908 1.01448 0.95064 1.74801 1.17535 1.19272 1.00962 1.78594 1.00604 1.08102 1.20339 1.46835 1.22855 1.32426 1.05434 1.22310 0.85854 0.95816 1.02293 1.21824 1.00457 1.05470 0.87275 1.19907 1.00214 0.99606 0.86669 0.91132 0.93870 0.92814 0.96020 0.96179 0.78196 0.93462 0.91245 0.91326 0.76346 0.90475 0.89652 0.89145 0.89445 0.88876 0.88087 0.87873 0.89436 0.88444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.94 37.15 0.33 -1.58 16 2 C -0.11 -1.57 2.46 -90.62 -0.22 -1.79 16 3 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 4 C 0.16 3.05 5.65 -4.04 -0.02 3.02 16 5 N -0.73 -17.81 5.33 -59.91 -0.32 -18.13 16 6 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 7 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 8 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -27.70 13.06 55.49 0.72 -26.98 16 10 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 C 0.13 1.54 5.06 -4.04 -0.02 1.52 16 15 N -0.72 -6.94 5.10 -60.29 -0.31 -7.24 16 16 C 0.52 5.24 7.15 -10.98 -0.08 5.16 16 17 O -0.54 -7.50 15.82 5.56 0.09 -7.41 16 18 C -0.10 -0.72 2.50 -91.49 -0.23 -0.95 16 19 H 0.11 0.62 8.12 -51.93 -0.42 0.20 16 20 C -0.11 -0.68 5.17 -26.45 -0.14 -0.82 16 21 C -0.03 -0.21 6.30 -27.71 -0.17 -0.39 16 22 C -0.02 -0.21 7.11 -83.13 -0.59 -0.80 16 23 N -0.26 -3.29 12.40 33.16 0.41 -2.88 16 24 N -0.10 -1.16 13.19 60.35 0.80 -0.37 16 25 N -0.28 -2.47 3.73 -64.01 -0.24 -2.71 16 26 C 0.08 0.30 11.27 59.85 0.67 0.97 16 27 C -0.02 -0.14 6.76 -82.50 -0.56 -0.70 16 28 C -0.02 -0.18 4.68 -27.74 -0.13 -0.31 16 29 H 0.07 1.15 7.18 -51.92 -0.37 0.78 16 30 H 0.04 0.45 7.19 -51.93 -0.37 0.07 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.38 9.73 6.85 -40.82 -0.28 9.45 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.40 2.98 7.00 -40.82 -0.29 2.69 16 39 H 0.08 0.52 8.12 -51.93 -0.42 0.10 16 40 H 0.08 0.41 7.31 -51.93 -0.38 0.03 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.10 0.21 7.96 -51.93 -0.41 -0.20 16 45 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.10 0.77 7.78 -51.93 -0.40 0.36 16 LS Contribution 381.26 15.07 5.75 5.75 Total: -1.00 -35.46 381.26 -7.07 -42.53 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -7.55 Total: 4.21 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -1.40 Total: -3.91 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: 1.07 Total: -58.31 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: 0.09 Total: -7.41 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.46 -7.07 -42.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753629995.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.888 kcal (2) G-P(sol) polarization free energy of solvation -35.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds