Wall clock time and date at job start Tue Mar 31 2020 05:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86802 * 120.00145 * 2 1 4 4 H 1.48505 * 109.46874 * 240.00413 * 3 2 1 5 5 H 1.48500 * 109.47255 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47240 * 120.00386 * 3 2 1 7 7 C 1.38951 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00222 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99716 * 359.97438 * 7 2 1 10 10 C 1.34770 * 119.99739 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00487 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99893 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47588 * 180.02562 * 12 10 9 14 14 C 1.34775 * 120.00492 * 180.02562 * 13 12 10 15 15 O 1.21579 * 119.99743 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99984 * 179.97438 * 14 13 12 17 17 C 1.46496 * 119.99724 * 179.97438 * 16 14 13 18 18 C 1.50696 * 109.47144 * 180.02562 * 17 16 14 19 19 C 1.38238 * 119.99764 * 90.00180 * 18 17 16 20 20 C 1.38234 * 119.99693 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00240 * 0.02562 * 20 19 18 22 22 N 1.48026 * 119.99930 * 179.97438 * 21 20 19 23 23 O 1.21793 * 119.99867 * 0.02562 * 22 21 20 24 24 O 1.21799 * 119.99956 * 179.97438 * 22 21 20 25 25 C 1.38233 * 120.00037 * 0.26327 * 21 20 19 26 26 C 1.38234 * 120.00189 * 270.02504 * 18 17 16 27 27 H 0.96999 * 119.99847 * 359.97438 * 1 2 3 28 28 H 0.97001 * 119.99831 * 0.02562 * 9 7 2 29 29 H 1.09003 * 109.46694 * 60.00564 * 12 10 9 30 30 H 1.08996 * 109.47351 * 300.00783 * 12 10 9 31 31 H 0.97007 * 119.99418 * 0.02562 * 13 12 10 32 32 H 0.96993 * 119.99856 * 359.97438 * 16 14 13 33 33 H 1.09004 * 109.47103 * 60.00380 * 17 16 14 34 34 H 1.08997 * 109.47720 * 300.00327 * 17 16 14 35 35 H 1.07991 * 120.00287 * 0.02562 * 19 18 17 36 36 H 1.08004 * 120.00214 * 179.97438 * 20 19 18 37 37 H 1.08004 * 119.99939 * 179.72815 * 25 21 20 38 38 H 1.07999 * 119.99990 * 359.97438 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2126 5 1 1.2832 2.7465 0.0006 6 1 3.1020 1.6964 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2437 -4.8629 -0.0010 13 7 2.1956 -5.9765 -0.0017 14 6 1.7464 -7.2472 -0.0019 15 8 0.5510 -7.4693 -0.0010 16 7 2.6222 -8.2716 -0.0031 17 6 2.1338 -9.6527 -0.0027 18 6 3.3059 -10.6000 -0.0036 19 6 3.8443 -11.0344 1.1932 20 6 4.9191 -11.9038 1.1923 21 6 5.4558 -12.3382 -0.0052 22 7 6.6071 -13.2687 -0.0061 23 8 7.0811 -13.6518 1.0484 24 8 7.0796 -13.6518 -1.0612 25 6 4.9212 -11.8991 -1.2020 26 6 3.8429 -11.0340 -1.2012 27 1 -0.4850 0.8401 0.0004 28 1 0.3533 -2.3906 -0.0005 29 1 0.6161 -4.9204 -0.8904 30 1 0.6180 -4.9208 0.8896 31 1 3.1494 -5.7992 -0.0021 32 1 3.5758 -8.0943 -0.0042 33 1 1.5273 -9.8239 -0.8921 34 1 1.5293 -9.8242 0.8879 35 1 3.4248 -10.6954 2.1287 36 1 5.3401 -12.2429 2.1273 37 1 5.3433 -12.2351 -2.1376 38 1 3.4222 -10.6946 -2.1362 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344250936.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:14 Heat of formation + Delta-G solvation = -43.265054 kcal Electronic energy + Delta-G solvation = -24860.316126 eV Core-core repulsion = 20706.264892 eV Total energy + Delta-G solvation = -4154.051234 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.57463 -40.47664 -39.69829 -38.27251 -36.95151 -35.48143 -34.49116 -33.75350 -32.45159 -32.02377 -31.42392 -28.68975 -27.23004 -25.20218 -24.28497 -23.79660 -22.12983 -20.94615 -19.83591 -19.67546 -19.04673 -18.68708 -18.09364 -17.91190 -16.80852 -16.34500 -15.98039 -15.58730 -15.53608 -15.22780 -14.78827 -14.51244 -14.48328 -14.25518 -14.03896 -13.67190 -13.48519 -13.12517 -12.50347 -12.25442 -12.15065 -11.99038 -11.89008 -11.67361 -11.57450 -11.51627 -11.14497 -10.54799 -10.44219 -10.34683 -9.99890 -9.98880 -9.67577 -9.42640 -8.77718 -8.69325 -8.15299 -6.56111 -3.98446 -0.69951 0.35468 0.81263 0.96425 2.44294 2.90063 3.09813 3.18487 3.20836 3.22216 3.68983 3.78434 3.80853 3.92333 4.04087 4.23736 4.29355 4.35366 4.68251 4.82295 4.92513 5.09299 5.12180 5.12382 5.15928 5.26388 5.62789 5.68374 5.81542 5.91618 5.98797 6.00723 6.17422 6.60919 6.86073 7.22441 7.41214 7.86869 8.03933 8.39458 8.59921 8.99571 9.33862 9.81501 10.60517 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.026167 B = 0.001788 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.795907 B =15660.444333 C =16302.215174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.307 4.307 8 H 0.105 0.895 9 N -0.547 5.547 10 C 0.427 3.573 11 O -0.599 6.599 12 C 0.128 3.872 13 N -0.722 5.722 14 C 0.707 3.293 15 O -0.594 6.594 16 N -0.748 5.748 17 C 0.175 3.825 18 C -0.052 4.052 19 C -0.098 4.098 20 C -0.056 4.056 21 C -0.041 4.041 22 N 0.027 4.973 23 O -0.159 6.159 24 O -0.159 6.159 25 C -0.056 4.056 26 C -0.098 4.098 27 H 0.275 0.725 28 H 0.396 0.604 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.407 0.593 32 H 0.399 0.601 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.152 0.848 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.959 -22.679 -0.010 23.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.436 4.436 8 H 0.123 0.877 9 N -0.182 5.182 10 C 0.212 3.788 11 O -0.486 6.486 12 C 0.000 4.000 13 N -0.379 5.379 14 C 0.406 3.594 15 O -0.473 6.473 16 N -0.406 5.406 17 C 0.051 3.949 18 C -0.053 4.053 19 C -0.117 4.117 20 C -0.075 4.075 21 C -0.124 4.124 22 N 0.547 4.453 23 O -0.375 6.375 24 O -0.375 6.375 25 C -0.075 4.075 26 C -0.117 4.117 27 H 0.085 0.915 28 H 0.230 0.770 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.245 0.755 32 H 0.233 0.767 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.170 0.830 36 H 0.173 0.827 37 H 0.173 0.827 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.922 -22.206 -0.008 22.549 hybrid contribution 1.008 0.738 -0.001 1.249 sum 4.930 -21.467 -0.009 22.026 Atomic orbital electron populations 1.69604 1.06007 1.28695 1.49053 1.25333 0.95680 0.99962 0.96699 0.85865 0.78783 0.80107 0.79166 1.19764 1.20824 1.19771 1.19678 0.93433 0.81990 1.48505 0.87725 1.41780 1.09503 1.04447 1.62470 1.19737 0.88292 0.84997 0.85744 1.90493 1.13746 1.86836 1.57511 1.20810 0.91151 0.84807 1.03240 1.44771 1.11396 1.03241 1.78469 1.15787 0.85044 0.80533 0.78027 1.90927 1.13911 1.84183 1.58286 1.44981 1.09351 1.04268 1.81959 1.20075 0.92131 0.78337 1.04385 1.20473 0.95869 0.95684 0.93275 1.21242 0.94969 0.96273 0.99181 1.21112 0.94597 0.94476 0.97292 1.21224 0.93227 1.00727 0.97206 1.43651 1.01209 0.99960 1.00498 1.94553 1.62769 1.59518 1.20667 1.94554 1.62876 1.59515 1.20570 1.21113 0.94583 0.94470 0.97307 1.21243 0.94917 0.96336 0.99172 0.91487 0.76992 0.89909 0.89913 0.75505 0.76724 0.89753 0.89762 0.83039 0.82654 0.82653 0.83038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.37 13.05 55.50 0.72 -22.65 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.14 29.55 -169.99 -5.02 15.12 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.31 -8.15 9.68 -14.93 -0.14 -8.29 16 8 H 0.10 2.89 7.16 -52.49 -0.38 2.52 16 9 N -0.55 -13.17 5.29 -10.96 -0.06 -13.23 16 10 C 0.43 9.41 7.85 -10.99 -0.09 9.32 16 11 O -0.60 -14.79 15.24 5.55 0.08 -14.71 16 12 C 0.13 2.24 6.15 -5.19 -0.03 2.20 16 13 N -0.72 -11.01 5.53 -66.42 -0.37 -11.38 16 14 C 0.71 9.97 8.57 -86.92 -0.74 9.23 16 15 O -0.59 -10.38 16.34 5.30 0.09 -10.30 16 16 N -0.75 -6.99 5.55 -66.42 -0.37 -7.36 16 17 C 0.17 1.24 5.80 -5.20 -0.03 1.21 16 18 C -0.05 -0.28 5.25 -104.63 -0.55 -0.83 16 19 C -0.10 -0.48 9.70 -39.58 -0.38 -0.87 16 20 C -0.06 -0.33 9.56 -39.58 -0.38 -0.71 16 21 C -0.04 -0.31 6.85 -79.95 -0.55 -0.86 16 22 N 0.03 0.28 4.45 33.96 0.15 0.43 16 23 O -0.16 -1.77 18.45 -29.46 -0.54 -2.31 16 24 O -0.16 -1.77 18.45 -29.46 -0.54 -2.31 16 25 C -0.06 -0.33 9.56 -39.58 -0.38 -0.71 16 26 C -0.10 -0.48 9.70 -39.58 -0.38 -0.87 16 27 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 28 H 0.40 9.16 7.90 -40.82 -0.32 8.84 16 29 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.41 6.06 7.45 -40.82 -0.30 5.76 16 32 H 0.40 3.00 8.48 -40.82 -0.35 2.66 16 33 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 34 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 35 H 0.15 0.51 8.06 -52.49 -0.42 0.08 16 36 H 0.16 0.77 7.61 -52.48 -0.40 0.37 16 37 H 0.16 0.77 7.61 -52.48 -0.40 0.37 16 38 H 0.15 0.51 8.06 -52.49 -0.42 0.08 16 LS Contribution 350.48 15.07 5.28 5.28 Total: -1.00 -32.84 350.48 -8.14 -40.98 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -3.81 Total: 13.03 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: -3.75 Total: 9.41 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.08 Total: -54.19 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -0.92 Total: -29.63 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.84 -8.14 -40.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344250936.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.282 kcal (2) G-P(sol) polarization free energy of solvation -32.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds