Wall clock time and date at job start Tue Mar 31 2020 05:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86807 * 119.99911 * 2 1 4 4 H 1.48497 * 109.46963 * 94.23044 * 3 2 1 5 5 H 1.48502 * 109.46883 * 214.22973 * 3 2 1 6 6 H 1.48502 * 109.46883 * 334.22770 * 3 2 1 7 7 C 1.40048 * 120.00392 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99576 * 1.81175 * 7 2 1 9 9 C 1.46367 * 120.00461 * 181.81031 * 7 2 1 10 10 O 1.21695 * 119.99845 * 16.20715 * 9 7 2 11 11 N 1.34776 * 120.00187 * 196.21134 * 9 7 2 12 12 C 1.46964 * 120.59491 * 355.09453 * 11 9 7 13 13 C 1.53812 * 108.39749 * 124.75840 * 12 11 9 14 14 N 1.46969 * 108.57731 * 49.63794 * 13 12 11 15 15 C 1.34776 * 120.59175 * 124.67070 * 14 13 12 16 16 O 1.21626 * 120.00320 * 186.53473 * 15 14 13 17 17 C 1.47216 * 120.00241 * 6.53190 * 15 14 13 18 18 C 1.37007 * 126.64393 * 200.95238 * 17 15 14 19 19 C 1.40954 * 105.46871 * 180.02562 * 18 17 15 20 20 C 1.47630 * 126.27973 * 180.02562 * 19 18 17 21 21 O 1.21479 * 120.00018 * 359.97438 * 20 19 18 22 22 O 1.34719 * 119.99822 * 179.97438 * 20 19 18 23 23 N 1.32001 * 107.44215 * 359.97438 * 19 18 17 24 24 N 1.28459 * 110.48885 * 359.72075 * 23 19 18 25 25 H 0.96996 * 125.05742 * 180.28927 * 24 23 19 26 26 C 1.46963 * 118.81527 * 304.64433 * 14 13 12 27 27 C 1.46969 * 120.59175 * 175.37704 * 11 9 7 28 28 H 0.97003 * 119.99918 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.60923 * 244.54144 * 12 11 9 30 30 H 1.08994 * 109.60727 * 5.05583 * 12 11 9 31 31 H 1.09003 * 109.74487 * 289.85524 * 13 12 11 32 32 H 1.08994 * 109.53634 * 169.30344 * 13 12 11 33 33 H 1.08008 * 127.26639 * 359.96732 * 18 17 15 34 34 H 0.96703 * 116.99788 * 179.97438 * 22 20 19 35 35 H 1.08999 * 109.60928 * 295.48463 * 26 14 13 36 36 H 1.08998 * 109.60658 * 174.96899 * 26 14 13 37 37 H 1.09002 * 109.61414 * 354.94593 * 27 11 9 38 38 H 1.08997 * 109.60752 * 115.46172 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.5776 1.9948 1.3962 5 1 3.4907 1.4677 -0.7876 6 1 1.3962 2.6769 -0.6088 7 6 2.0070 -1.2128 -0.0005 8 1 1.4674 -2.1479 -0.0305 9 6 3.4701 -1.2132 0.0395 10 8 4.0701 -0.2062 0.3666 11 7 4.1529 -2.3286 -0.2860 12 6 3.4429 -3.5816 -0.5788 13 6 3.8787 -4.0729 -1.9697 14 7 5.3470 -4.0596 -2.0320 15 6 6.0298 -5.1751 -2.3575 16 8 7.2442 -5.1861 -2.2907 17 6 5.3058 -6.3804 -2.7937 18 6 5.7742 -7.6678 -2.7736 19 6 4.7248 -8.4577 -3.2852 20 6 4.7416 -9.9230 -3.4641 21 8 5.7290 -10.5610 -3.1580 22 8 3.6619 -10.5526 -3.9667 23 7 3.7239 -7.6470 -3.5739 24 7 4.0332 -6.4325 -3.2918 25 1 3.4518 -5.6662 -3.4163 26 6 6.0574 -2.8082 -1.7337 27 6 5.6212 -2.3154 -0.3483 28 1 -0.4850 0.8401 0.0004 29 1 3.6961 -4.3297 0.1723 30 1 2.3677 -3.4027 -0.5727 31 1 3.4741 -3.4128 -2.7369 32 1 3.5150 -5.0881 -2.1281 33 1 6.7434 -8.0060 -2.4376 34 1 3.7202 -11.5128 -4.0658 35 1 5.8078 -2.0580 -2.4841 36 1 7.1324 -2.9882 -1.7362 37 1 5.9850 -1.3001 -0.1900 38 1 6.0259 -2.9755 0.4188 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480946.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:56 Heat of formation + Delta-G solvation = -54.502163 kcal Electronic energy + Delta-G solvation = -26921.576653 eV Core-core repulsion = 22767.038141 eV Total energy + Delta-G solvation = -4154.538512 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.29456 -40.33939 -39.98124 -38.45308 -36.54604 -36.41093 -33.76123 -33.02000 -32.64303 -31.86920 -30.88868 -27.99319 -26.58877 -25.67617 -24.06764 -23.59361 -21.92186 -21.15623 -20.97189 -19.44934 -18.46479 -18.07475 -17.28177 -16.84296 -16.63610 -16.46346 -15.94101 -15.73534 -15.50921 -15.05397 -14.94875 -14.65113 -14.28177 -14.10406 -13.92476 -13.68956 -13.40237 -12.63174 -12.49390 -12.39010 -12.05917 -11.92760 -11.67113 -11.46323 -11.37210 -11.22464 -11.21613 -10.94801 -10.54573 -10.34937 -10.00534 -9.74820 -9.63001 -9.18760 -9.06007 -8.08736 -7.72300 -6.76787 -5.02516 0.74552 1.03387 2.04756 2.41664 2.63315 2.76898 2.92032 3.32530 3.39228 3.64495 3.90152 3.93271 3.98427 4.02694 4.40117 4.60016 4.75721 4.87893 4.94881 5.09175 5.16495 5.19914 5.27076 5.47048 5.57029 5.67587 5.76541 5.94379 5.99456 6.04407 6.16266 6.20111 6.31630 6.82158 7.00272 7.14863 7.36459 7.56811 7.65858 7.74196 8.08837 8.50663 8.91826 9.80886 10.23312 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.022881 B = 0.002998 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.417496 B = 9337.511461 C =10273.776025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.101 3.899 3 Si 0.961 3.039 4 H -0.279 1.279 5 H -0.254 1.254 6 H -0.321 1.321 7 C -0.534 4.534 8 H 0.091 0.909 9 C 0.552 3.448 10 O -0.609 6.609 11 N -0.633 5.633 12 C 0.110 3.890 13 C 0.069 3.931 14 N -0.601 5.601 15 C 0.590 3.410 16 O -0.519 6.519 17 C -0.027 4.027 18 C -0.093 4.093 19 C -0.014 4.014 20 C 0.578 3.422 21 O -0.503 6.503 22 O -0.500 6.500 23 N -0.201 5.201 24 N -0.360 5.360 25 H 0.457 0.543 26 C 0.101 3.899 27 C 0.105 3.895 28 H 0.284 0.716 29 H 0.056 0.944 30 H 0.117 0.883 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.179 0.821 34 H 0.417 0.583 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.397 -15.152 -8.254 18.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.118 4.118 3 Si 0.793 3.207 4 H -0.205 1.205 5 H -0.179 1.179 6 H -0.253 1.253 7 C -0.569 4.569 8 H 0.109 0.891 9 C 0.362 3.638 10 O -0.500 6.500 11 N -0.368 5.368 12 C -0.015 4.015 13 C -0.056 4.056 14 N -0.334 5.334 15 C 0.375 3.625 16 O -0.393 6.393 17 C -0.153 4.153 18 C -0.121 4.121 19 C -0.170 4.170 20 C 0.419 3.581 21 O -0.389 6.389 22 O -0.311 6.311 23 N -0.041 5.041 24 N -0.089 5.089 25 H 0.312 0.688 26 C -0.022 4.022 27 C -0.020 4.020 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.135 0.865 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.197 0.803 34 H 0.276 0.724 35 H 0.095 0.905 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.394 -14.361 -8.313 17.448 hybrid contribution 0.522 0.267 0.191 0.617 sum 5.916 -14.094 -8.122 17.309 Atomic orbital electron populations 1.69525 1.07902 1.30203 1.38013 1.25766 0.94812 1.02082 0.89106 0.85343 0.78160 0.77207 0.79950 1.20516 1.17884 1.25267 1.20729 0.87941 0.95468 1.52772 0.89135 1.18404 0.88864 0.80223 0.76299 1.90282 1.70825 1.32658 1.56229 1.47710 1.04273 1.10573 1.74235 1.21924 1.00223 0.86881 0.92492 1.22866 0.79466 1.01399 1.01823 1.48026 1.07340 1.10407 1.67619 1.16931 0.86566 0.80982 0.77976 1.90853 1.12327 1.82295 1.53841 1.21466 0.87410 0.96904 1.09492 1.21826 1.00541 0.89056 1.00637 1.20555 0.93681 0.91742 1.11005 1.19100 0.80093 0.85721 0.73186 1.90948 1.33968 1.66339 1.47596 1.84634 1.41271 1.28554 1.76595 1.73720 1.24613 0.90388 1.15415 1.44992 1.11949 1.07609 1.44393 0.68822 1.22212 0.98023 0.83684 0.98251 1.21644 0.83058 1.02921 0.94372 0.90622 0.92565 0.86503 0.89200 0.90171 0.80327 0.72418 0.90459 0.88092 0.88009 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.94 13.92 55.55 0.77 -21.17 16 2 C 0.10 2.66 5.52 -17.37 -0.10 2.56 16 3 Si 0.96 23.79 26.10 -169.99 -4.44 19.35 16 4 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.25 -6.56 6.23 56.52 0.35 -6.21 16 6 H -0.32 -7.62 7.11 56.52 0.40 -7.22 16 7 C -0.53 -13.55 9.34 -35.64 -0.33 -13.88 16 8 H 0.09 2.24 6.02 -52.48 -0.32 1.92 16 9 C 0.55 13.23 7.33 -12.99 -0.10 13.13 16 10 O -0.61 -16.22 11.45 5.19 0.06 -16.16 16 11 N -0.63 -11.85 2.94 -173.87 -0.51 -12.37 16 12 C 0.11 1.62 6.54 -3.37 -0.02 1.59 16 13 C 0.07 0.77 5.62 -3.36 -0.02 0.75 16 14 N -0.60 -7.47 2.95 -173.56 -0.51 -7.98 16 15 C 0.59 7.63 7.65 -12.61 -0.10 7.54 16 16 O -0.52 -8.14 16.38 5.25 0.09 -8.06 16 17 C -0.03 -0.30 6.51 -82.47 -0.54 -0.84 16 18 C -0.09 -1.04 10.61 -39.00 -0.41 -1.45 16 19 C -0.01 -0.15 7.13 -82.93 -0.59 -0.75 16 20 C 0.58 6.03 8.34 34.56 0.29 6.32 16 21 O -0.50 -6.28 17.70 -19.25 -0.34 -6.62 16 22 O -0.50 -3.83 13.44 -40.54 -0.54 -4.38 16 23 N -0.20 -2.15 12.22 33.32 0.41 -1.74 16 24 N -0.36 -3.39 5.70 33.26 0.19 -3.20 16 25 H 0.46 3.25 6.06 -190.45 -1.15 2.10 16 26 C 0.10 1.35 6.60 -3.60 -0.02 1.33 16 27 C 0.10 1.68 6.58 -3.59 -0.02 1.66 16 28 H 0.28 6.97 8.29 -40.82 -0.34 6.64 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.12 1.84 5.35 -51.93 -0.28 1.56 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.08 0.69 3.87 -51.93 -0.20 0.49 16 33 H 0.18 1.89 8.06 -52.48 -0.42 1.46 16 34 H 0.42 1.04 9.11 45.56 0.42 1.45 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.10 1.30 6.99 -51.93 -0.36 0.94 16 37 H 0.10 1.79 7.01 -51.93 -0.36 1.43 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 324.33 15.07 4.89 4.89 Total: -1.00 -34.28 324.33 -5.46 -39.74 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -3.56 Total: -0.27 kcal Atomic # 6 Polarization: 19.92 SS G_CDS: -1.96 Total: 17.96 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.35 Total: -46.46 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -0.74 Total: -35.22 kcal Atomic # 14 Polarization: 23.79 SS G_CDS: -4.44 Total: 19.35 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.28 -5.46 -39.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480946.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.759 kcal (2) G-P(sol) polarization free energy of solvation -34.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds