Wall clock time and date at job start Tue Mar 31 2020 05:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86805 * 119.99680 * 2 1 4 4 H 1.48502 * 109.47322 * 274.97322 * 3 2 1 5 5 H 1.48499 * 109.47142 * 34.97361 * 3 2 1 6 6 H 1.48502 * 109.47100 * 154.97363 * 3 2 1 7 7 C 1.38803 * 120.00431 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00496 * 193.14880 * 7 2 1 9 9 N 1.36985 * 120.00000 * 13.14948 * 7 2 1 10 10 C 1.47755 * 121.47770 * 206.00709 * 9 7 2 11 11 C 1.52988 * 109.12584 * 261.04417 * 10 9 7 12 12 N 1.47596 * 108.83180 * 295.66365 * 11 10 9 13 13 C 1.36007 * 117.04372 * 118.28053 * 12 11 10 14 14 O 1.21270 * 120.78649 * 9.69570 * 13 12 11 15 15 C 1.50756 * 118.96248 * 189.53363 * 13 12 11 16 16 C 1.52907 * 109.53517 * 114.78922 * 15 13 12 17 17 N 1.47765 * 109.31498 * 292.07276 * 16 15 13 18 18 C 1.34854 * 121.46767 * 264.28336 * 17 16 15 19 19 O 1.21609 * 119.99868 * 176.99978 * 18 17 16 20 20 C 1.47420 * 119.99682 * 357.00207 * 18 17 16 21 21 C 1.36093 * 126.44659 * 186.23571 * 20 18 17 22 22 O 1.34261 * 106.94901 * 179.97438 * 21 20 18 23 23 C 1.34054 * 108.22503 * 0.02562 * 22 21 20 24 24 N 1.29931 * 109.24242 * 359.74209 * 23 22 21 25 25 C 1.47739 * 116.74550 * 84.86679 * 17 16 15 26 26 C 1.47786 * 121.79143 * 25.59964 * 9 7 2 27 27 H 0.97000 * 120.00800 * 359.97438 * 1 2 3 28 28 H 1.09041 * 109.50355 * 20.93606 * 10 9 7 29 29 H 1.08999 * 109.56955 * 141.07046 * 10 9 7 30 30 H 1.08860 * 109.67331 * 56.09656 * 11 10 9 31 31 H 1.09130 * 109.39956 * 176.14022 * 11 10 9 32 32 H 0.97134 * 121.42083 * 299.33530 * 12 11 10 33 33 H 1.08938 * 109.50998 * 354.39925 * 15 13 12 34 34 H 1.09088 * 109.29316 * 234.63676 * 15 13 12 35 35 H 1.09097 * 109.53566 * 172.15998 * 16 15 13 36 36 H 1.09046 * 109.61521 * 52.16312 * 16 15 13 37 37 H 1.08000 * 126.52221 * 0.02562 * 21 20 18 38 38 H 1.08002 * 125.37244 * 179.97438 * 23 22 21 39 39 H 1.09188 * 109.26434 * 119.01838 * 25 17 16 40 40 H 1.09011 * 109.33720 * 359.48740 * 25 17 16 41 41 H 1.08973 * 109.36275 * 172.81845 * 26 9 7 42 42 H 1.09174 * 109.22537 * 292.43141 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3924 2.1073 -1.3948 5 1 1.5040 2.6201 0.8025 6 1 3.5962 1.4123 0.5923 7 6 2.0102 -1.2020 -0.0005 8 1 3.0691 -1.2144 0.2122 9 7 1.3523 -2.3727 -0.2709 10 6 1.8409 -3.6689 0.2434 11 6 2.6223 -4.3838 -0.8607 12 7 1.7006 -4.6977 -1.9699 13 6 1.9693 -4.1304 -3.1765 14 8 3.0144 -3.5460 -3.3687 15 6 0.9472 -4.2412 -4.2791 16 6 0.4100 -2.8508 -4.6199 17 7 -0.3844 -2.3414 -3.4829 18 6 -1.7258 -2.4754 -3.4452 19 8 -2.3476 -2.0954 -2.4717 20 6 -2.4381 -3.0827 -4.5841 21 6 -3.7872 -3.1744 -4.7379 22 8 -4.0064 -3.7940 -5.9086 23 6 -2.8187 -4.0773 -6.4619 24 7 -1.8706 -3.6523 -5.6817 25 6 0.3612 -1.6685 -2.3994 26 6 0.1171 -2.4023 -1.0817 27 1 -0.4851 0.8400 0.0004 28 1 2.4936 -3.4979 1.1000 29 1 0.9938 -4.2835 0.5479 30 1 3.4271 -3.7419 -1.2146 31 1 3.0433 -5.3097 -0.4653 32 1 0.9278 -5.2714 -1.8392 33 1 0.1287 -4.8821 -3.9534 34 1 1.4163 -4.6752 -5.1631 35 1 -0.2226 -2.9113 -5.5067 36 1 1.2427 -2.1744 -4.8153 37 1 -4.5384 -2.8162 -4.0496 38 1 -2.6731 -4.5764 -7.4085 39 1 0.0161 -0.6362 -2.3119 40 1 1.4251 -1.6730 -2.6365 41 1 -0.1625 -3.4374 -1.2765 42 1 -0.6861 -1.9085 -0.5313 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070946009.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:19 Heat of formation + Delta-G solvation = 11.287806 kcal Electronic energy + Delta-G solvation = -29444.342052 eV Core-core repulsion = 25428.489502 eV Total energy + Delta-G solvation = -4015.852550 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.52459 -39.70072 -38.61397 -36.03417 -35.47521 -34.77365 -33.67362 -31.32744 -30.52166 -30.42015 -29.13976 -26.80368 -24.86496 -23.73054 -23.39483 -22.81617 -21.70700 -20.31764 -19.73335 -19.50601 -17.48751 -16.86318 -16.84199 -16.56932 -16.26371 -15.76330 -15.33630 -14.94982 -14.88066 -14.59818 -14.20599 -13.76699 -13.58105 -13.33130 -13.22481 -12.81581 -12.66192 -12.41252 -12.32256 -11.88594 -11.65424 -11.41554 -11.19759 -11.03193 -10.79048 -10.57745 -10.46047 -10.30501 -9.99161 -9.89438 -9.57854 -9.43253 -9.24707 -9.18293 -8.73883 -8.33165 -8.07663 -6.58191 -5.55643 -3.15003 1.11162 2.01184 2.57846 3.12677 3.36945 3.44058 3.51493 3.52292 3.60580 3.84259 3.94489 4.55766 4.73185 4.81440 5.12993 5.34434 5.38867 5.47214 5.51435 5.54330 5.58306 5.68754 5.75719 6.02477 6.07094 6.12463 6.19642 6.34204 6.50128 6.54707 6.60566 6.77932 6.95631 7.04378 7.05076 7.31418 7.44267 7.81223 7.92199 8.04811 8.14382 8.44501 8.63145 8.76381 9.27900 9.89200 10.47703 11.38938 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013806 B = 0.005384 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.561116 B = 5198.887722 C = 6268.033119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.003 3.997 3 Si 0.897 3.103 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.247 4.247 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.127 3.873 11 C 0.084 3.916 12 N -0.724 5.724 13 C 0.522 3.478 14 O -0.543 6.543 15 C -0.145 4.145 16 C 0.099 3.901 17 N -0.598 5.598 18 C 0.588 3.412 19 O -0.518 6.518 20 C -0.060 4.060 21 C 0.007 3.993 22 O -0.202 6.202 23 C 0.169 3.831 24 N -0.462 5.462 25 C 0.117 3.883 26 C 0.164 3.836 27 H 0.252 0.748 28 H 0.062 0.938 29 H 0.033 0.967 30 H 0.092 0.908 31 H 0.049 0.951 32 H 0.397 0.603 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.127 0.873 36 H 0.076 0.924 37 H 0.229 0.771 38 H 0.252 0.748 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.019 0.981 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.140 -11.991 -12.765 18.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.196 4.196 3 Si 0.727 3.273 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.376 4.376 8 H 0.084 0.916 9 N -0.314 5.314 10 C -0.001 4.001 11 C -0.042 4.042 12 N -0.377 5.377 13 C 0.309 3.691 14 O -0.420 6.420 15 C -0.186 4.186 16 C -0.025 4.025 17 N -0.330 5.330 18 C 0.374 3.626 19 O -0.394 6.394 20 C -0.180 4.180 21 C -0.067 4.067 22 O -0.088 6.088 23 C -0.059 4.059 24 N -0.192 5.192 25 C -0.004 4.004 26 C 0.039 3.961 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.051 0.949 30 H 0.111 0.889 31 H 0.068 0.932 32 H 0.231 0.769 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.144 0.856 36 H 0.095 0.905 37 H 0.246 0.754 38 H 0.267 0.733 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.037 0.963 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.217 -11.229 -12.433 17.547 hybrid contribution -0.501 0.634 -0.003 0.808 sum -5.718 -10.596 -12.437 17.310 Atomic orbital electron populations 1.69960 1.04807 1.25074 1.53682 1.25025 0.95261 0.97871 1.01454 0.86344 0.79158 0.84250 0.77533 1.21658 1.21848 1.20455 1.19054 0.91428 0.83971 1.43189 0.91620 1.44505 1.28569 1.01219 1.57105 1.21441 0.96367 0.88336 0.93912 1.22535 0.94200 0.98927 0.88566 1.46449 1.30181 1.50810 1.10244 1.20790 0.87131 0.77488 0.83727 1.90662 1.26713 1.42841 1.81777 1.22017 0.98228 1.00051 0.98316 1.22292 0.96656 0.92484 0.91056 1.48860 1.05137 1.56520 1.22514 1.16747 0.82009 0.79399 0.84471 1.90903 1.66413 1.49685 1.32359 1.22147 0.92085 1.06833 0.96885 1.25305 0.98163 0.96795 0.86406 1.84422 1.36288 1.58196 1.29859 1.28240 0.76563 1.00350 1.00709 1.70774 1.32148 1.13333 1.02984 1.22689 0.94772 0.97048 0.85892 1.21333 0.90584 0.94433 0.89769 0.93717 0.91959 0.94871 0.88935 0.93247 0.76852 0.90677 0.88431 0.85622 0.90547 0.75441 0.73273 0.90763 0.90327 0.96301 0.89777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.91 9.69 55.49 0.54 -25.38 16 2 C 0.00 0.08 4.59 -17.44 -0.08 0.00 16 3 Si 0.90 22.31 29.57 -169.99 -5.03 17.28 16 4 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.25 -6.74 9.14 -15.04 -0.14 -6.87 16 8 H 0.07 1.80 7.86 -52.48 -0.41 1.39 16 9 N -0.59 -14.55 2.72 -171.22 -0.47 -15.01 16 10 C 0.13 2.55 6.06 -3.36 -0.02 2.53 16 11 C 0.08 1.48 6.68 -3.45 -0.02 1.46 16 12 N -0.72 -11.89 3.71 -59.21 -0.22 -12.11 16 13 C 0.52 9.28 5.09 -10.40 -0.05 9.23 16 14 O -0.54 -11.78 15.87 5.57 0.09 -11.69 16 15 C -0.14 -2.06 6.09 -27.90 -0.17 -2.23 16 16 C 0.10 1.55 5.22 -3.40 -0.02 1.54 16 17 N -0.60 -11.31 2.60 -172.94 -0.45 -11.76 16 18 C 0.59 10.93 7.47 -12.49 -0.09 10.84 16 19 O -0.52 -11.47 15.91 5.27 0.08 -11.39 16 20 C -0.06 -0.84 6.72 -83.02 -0.56 -1.40 16 21 C 0.01 0.07 11.95 29.96 0.36 0.43 16 22 O -0.20 -1.85 10.73 6.49 0.07 -1.78 16 23 C 0.17 1.31 13.19 51.96 0.69 2.00 16 24 N -0.46 -5.29 7.81 -11.48 -0.09 -5.38 16 25 C 0.12 2.73 3.97 -3.47 -0.01 2.72 16 26 C 0.16 3.96 3.49 -3.45 -0.01 3.95 16 27 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.06 1.23 8.03 -51.91 -0.42 0.81 16 29 H 0.03 0.63 8.05 -51.93 -0.42 0.21 16 30 H 0.09 1.93 6.78 -52.01 -0.35 1.57 16 31 H 0.05 0.72 8.15 -51.86 -0.42 0.30 16 32 H 0.40 5.61 8.45 -40.77 -0.34 5.26 16 33 H 0.07 0.99 7.93 -51.96 -0.41 0.58 16 34 H 0.10 1.17 8.15 -51.88 -0.42 0.75 16 35 H 0.13 1.74 4.65 -51.90 -0.24 1.50 16 36 H 0.08 1.30 7.79 -51.90 -0.40 0.90 16 37 H 0.23 2.07 8.06 -52.49 -0.42 1.64 16 38 H 0.25 0.59 8.06 -52.49 -0.42 0.17 16 39 H 0.07 1.99 6.90 -51.82 -0.36 1.64 16 40 H 0.08 1.98 6.14 -51.92 -0.32 1.66 16 41 H 0.02 0.42 6.22 -51.94 -0.32 0.10 16 42 H 0.08 2.42 6.02 -51.83 -0.31 2.11 16 LS Contribution 335.15 15.07 5.05 5.05 Total: -1.00 -34.98 335.15 -5.69 -40.67 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -5.14 Total: 7.29 kcal Atomic # 6 Polarization: 24.33 SS G_CDS: -0.14 Total: 24.19 kcal Atomic # 7 Polarization: -68.95 SS G_CDS: -0.69 Total: -69.64 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: 0.24 Total: -24.85 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.28 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.98 -5.69 -40.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070946009.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.961 kcal (2) G-P(sol) polarization free energy of solvation -34.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds