Wall clock time and date at job start Tue Mar 31 2020 05:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86805 * 119.99680 * 2 1 4 4 H 1.48502 * 109.47322 * 274.97322 * 3 2 1 5 5 H 1.48499 * 109.47142 * 34.97361 * 3 2 1 6 6 H 1.48502 * 109.47100 * 154.97363 * 3 2 1 7 7 C 1.38803 * 120.00431 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00496 * 193.14880 * 7 2 1 9 9 N 1.36985 * 120.00000 * 13.14948 * 7 2 1 10 10 C 1.47755 * 121.47770 * 206.00709 * 9 7 2 11 11 C 1.52988 * 109.12584 * 261.04417 * 10 9 7 12 12 N 1.47596 * 108.83180 * 295.66365 * 11 10 9 13 13 C 1.36007 * 117.04372 * 118.28053 * 12 11 10 14 14 O 1.21270 * 120.78649 * 9.69570 * 13 12 11 15 15 C 1.50756 * 118.96248 * 189.53363 * 13 12 11 16 16 C 1.52907 * 109.53517 * 114.78922 * 15 13 12 17 17 N 1.47765 * 109.31498 * 292.07276 * 16 15 13 18 18 C 1.34854 * 121.46767 * 264.28336 * 17 16 15 19 19 O 1.21609 * 119.99868 * 176.99978 * 18 17 16 20 20 C 1.47420 * 119.99682 * 357.00207 * 18 17 16 21 21 C 1.36093 * 126.44659 * 186.23571 * 20 18 17 22 22 O 1.34261 * 106.94901 * 179.97438 * 21 20 18 23 23 C 1.34054 * 108.22503 * 0.02562 * 22 21 20 24 24 N 1.29931 * 109.24242 * 359.74209 * 23 22 21 25 25 C 1.47739 * 116.74550 * 84.86679 * 17 16 15 26 26 C 1.47786 * 121.79143 * 25.59964 * 9 7 2 27 27 H 0.97000 * 120.00800 * 359.97438 * 1 2 3 28 28 H 1.09041 * 109.50355 * 20.93606 * 10 9 7 29 29 H 1.08999 * 109.56955 * 141.07046 * 10 9 7 30 30 H 1.08860 * 109.67331 * 56.09656 * 11 10 9 31 31 H 1.09130 * 109.39956 * 176.14022 * 11 10 9 32 32 H 0.97134 * 121.42083 * 299.33530 * 12 11 10 33 33 H 1.08938 * 109.50998 * 354.39925 * 15 13 12 34 34 H 1.09088 * 109.29316 * 234.63676 * 15 13 12 35 35 H 1.09097 * 109.53566 * 172.15998 * 16 15 13 36 36 H 1.09046 * 109.61521 * 52.16312 * 16 15 13 37 37 H 1.08000 * 126.52221 * 0.02562 * 21 20 18 38 38 H 1.08002 * 125.37244 * 179.97438 * 23 22 21 39 39 H 1.09188 * 109.26434 * 119.01838 * 25 17 16 40 40 H 1.09011 * 109.33720 * 359.48740 * 25 17 16 41 41 H 1.08973 * 109.36275 * 172.81845 * 26 9 7 42 42 H 1.09174 * 109.22537 * 292.43141 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3924 2.1073 -1.3948 5 1 1.5040 2.6201 0.8025 6 1 3.5962 1.4123 0.5923 7 6 2.0102 -1.2020 -0.0005 8 1 3.0691 -1.2144 0.2122 9 7 1.3523 -2.3727 -0.2709 10 6 1.8409 -3.6689 0.2434 11 6 2.6223 -4.3838 -0.8607 12 7 1.7006 -4.6977 -1.9699 13 6 1.9693 -4.1304 -3.1765 14 8 3.0144 -3.5460 -3.3687 15 6 0.9472 -4.2412 -4.2791 16 6 0.4100 -2.8508 -4.6199 17 7 -0.3844 -2.3414 -3.4829 18 6 -1.7258 -2.4754 -3.4452 19 8 -2.3476 -2.0954 -2.4717 20 6 -2.4381 -3.0827 -4.5841 21 6 -3.7872 -3.1744 -4.7379 22 8 -4.0064 -3.7940 -5.9086 23 6 -2.8187 -4.0773 -6.4619 24 7 -1.8706 -3.6523 -5.6817 25 6 0.3612 -1.6685 -2.3994 26 6 0.1171 -2.4023 -1.0817 27 1 -0.4851 0.8400 0.0004 28 1 2.4936 -3.4979 1.1000 29 1 0.9938 -4.2835 0.5479 30 1 3.4271 -3.7419 -1.2146 31 1 3.0433 -5.3097 -0.4653 32 1 0.9278 -5.2714 -1.8392 33 1 0.1287 -4.8821 -3.9534 34 1 1.4163 -4.6752 -5.1631 35 1 -0.2226 -2.9113 -5.5067 36 1 1.2427 -2.1744 -4.8153 37 1 -4.5384 -2.8162 -4.0496 38 1 -2.6731 -4.5764 -7.4085 39 1 0.0161 -0.6362 -2.3119 40 1 1.4251 -1.6730 -2.6365 41 1 -0.1625 -3.4374 -1.2765 42 1 -0.6861 -1.9085 -0.5313 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070946009.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:19 Heat of formation + Delta-G solvation = -16.788832 kcal Electronic energy + Delta-G solvation = -29445.559547 eV Core-core repulsion = 25428.489502 eV Total energy + Delta-G solvation = -4017.070044 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.32913 -41.17381 -40.08526 -37.84617 -36.90147 -35.75175 -35.29239 -33.20560 -31.97658 -31.53345 -30.69680 -28.55344 -26.55074 -25.16360 -24.82708 -23.66625 -23.05175 -22.06195 -21.27712 -20.67921 -18.74364 -18.50972 -18.11829 -17.79118 -17.43716 -17.32412 -16.67944 -16.48176 -16.37582 -15.81626 -15.76232 -15.26382 -15.20571 -14.81163 -14.58099 -14.39701 -14.25879 -13.99492 -13.64428 -13.45603 -13.19639 -13.01076 -12.81352 -12.53745 -12.40626 -12.31436 -12.14392 -11.94138 -11.82084 -11.69267 -11.28423 -11.01375 -10.77850 -10.55814 -10.16839 -9.94258 -9.65326 -8.61634 -7.68153 -5.30161 0.19769 1.16989 1.41023 1.43693 1.51324 1.70847 1.78349 2.04997 2.31778 2.49615 2.53359 3.10754 3.34166 3.61073 3.75997 3.90335 3.96560 4.15220 4.32609 4.39656 4.45180 4.51972 4.59193 4.61114 4.65532 4.69296 4.77946 4.83903 4.86666 4.95840 4.99414 5.24616 5.30312 5.43073 5.60210 5.62088 5.69819 5.94248 6.31735 6.46753 6.62698 6.72441 7.12840 7.19750 7.40294 7.85335 8.39647 9.21872 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013806 B = 0.005384 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.561116 B = 5198.887722 C = 6268.033119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.043 4.043 3 Si 0.948 3.052 4 H -0.296 1.296 5 H -0.294 1.294 6 H -0.268 1.268 7 C -0.248 4.248 8 H 0.062 0.938 9 N -0.608 5.608 10 C 0.123 3.877 11 C 0.096 3.904 12 N -0.718 5.718 13 C 0.514 3.486 14 O -0.587 6.587 15 C -0.132 4.132 16 C 0.102 3.898 17 N -0.602 5.602 18 C 0.586 3.414 19 O -0.566 6.566 20 C -0.092 4.092 21 C 0.029 3.971 22 O -0.195 6.195 23 C 0.205 3.795 24 N -0.489 5.489 25 C 0.145 3.855 26 C 0.186 3.814 27 H 0.243 0.757 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.411 0.589 33 H 0.093 0.907 34 H 0.130 0.870 35 H 0.153 0.847 36 H 0.056 0.944 37 H 0.242 0.758 38 H 0.307 0.693 39 H 0.029 0.971 40 H 0.056 0.944 41 H 0.036 0.964 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.841 -14.695 -15.172 22.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.239 4.239 3 Si 0.778 3.222 4 H -0.223 1.223 5 H -0.220 1.220 6 H -0.192 1.192 7 C -0.379 4.379 8 H 0.080 0.920 9 N -0.331 5.331 10 C -0.003 4.003 11 C -0.030 4.030 12 N -0.371 5.371 13 C 0.302 3.698 14 O -0.467 6.467 15 C -0.173 4.173 16 C -0.021 4.021 17 N -0.334 5.334 18 C 0.375 3.625 19 O -0.445 6.445 20 C -0.210 4.210 21 C -0.046 4.046 22 O -0.080 6.080 23 C -0.023 4.023 24 N -0.219 5.219 25 C 0.021 3.979 26 C 0.060 3.940 27 H 0.053 0.947 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.248 0.752 33 H 0.111 0.889 34 H 0.148 0.852 35 H 0.170 0.830 36 H 0.074 0.926 37 H 0.258 0.742 38 H 0.322 0.678 39 H 0.047 0.953 40 H 0.074 0.926 41 H 0.054 0.946 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.901 -13.995 -14.847 21.240 hybrid contribution -0.333 1.373 0.663 1.561 sum -6.234 -12.622 -14.184 19.984 Atomic orbital electron populations 1.70157 1.05932 1.24792 1.55220 1.25607 0.95838 1.00412 1.02089 0.85518 0.78595 0.81151 0.76935 1.22315 1.22049 1.19244 1.19234 0.91406 0.85249 1.41979 0.92007 1.44720 1.28454 1.02286 1.57652 1.21654 0.97160 0.86665 0.94844 1.22255 0.93059 0.99859 0.87854 1.46426 1.30417 1.50550 1.09675 1.21456 0.87156 0.76498 0.84684 1.90646 1.28755 1.44662 1.82619 1.21989 0.97710 0.99339 0.98225 1.22476 0.96109 0.92734 0.90741 1.48818 1.05772 1.56572 1.22262 1.17318 0.81491 0.78444 0.85241 1.90874 1.67213 1.51740 1.34675 1.21443 0.92846 1.09721 0.96999 1.25492 0.97248 0.95103 0.86768 1.84496 1.36831 1.57744 1.28928 1.29422 0.75017 0.97183 1.00716 1.70560 1.33458 1.14959 1.02888 1.21967 0.93458 0.95141 0.87296 1.20926 0.89128 0.94551 0.89378 0.94736 0.91771 0.93267 0.92159 0.89062 0.75188 0.88892 0.85234 0.82972 0.92565 0.74201 0.67840 0.95278 0.92560 0.94587 0.94540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.08 9.69 21.65 0.21 -55.87 16 2 C -0.04 -2.50 4.59 84.86 0.39 -2.11 16 3 Si 0.95 47.51 29.57 68.60 2.03 49.54 16 4 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 5 H -0.29 -14.70 7.11 99.48 0.71 -14.00 16 6 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 7 C -0.25 -13.99 9.14 84.02 0.77 -13.22 16 8 H 0.06 3.47 7.86 -2.91 -0.02 3.45 16 9 N -0.61 -30.71 2.72 -695.61 -1.89 -32.61 16 10 C 0.12 4.87 6.06 86.13 0.52 5.40 16 11 C 0.10 3.27 6.68 86.17 0.58 3.85 16 12 N -0.72 -22.49 3.71 -458.94 -1.70 -24.19 16 13 C 0.51 17.79 5.09 87.48 0.45 18.24 16 14 O -0.59 -25.60 15.87 -3.00 -0.05 -25.65 16 15 C -0.13 -3.44 6.09 29.83 0.18 -3.26 16 16 C 0.10 3.11 5.22 86.11 0.45 3.56 16 17 N -0.60 -23.26 2.60 -819.27 -2.13 -25.38 16 18 C 0.59 22.08 7.47 86.65 0.65 22.73 16 19 O -0.57 -26.16 15.91 -4.06 -0.06 -26.22 16 20 C -0.09 -2.43 6.72 40.41 0.27 -2.16 16 21 C 0.03 0.56 11.95 67.32 0.80 1.37 16 22 O -0.19 -2.69 10.73 0.30 0.00 -2.69 16 23 C 0.20 2.08 13.19 130.52 1.72 3.81 16 24 N -0.49 -9.42 7.81 -305.15 -2.38 -11.81 16 25 C 0.14 7.10 3.97 86.07 0.34 7.44 16 26 C 0.19 9.33 3.49 86.06 0.30 9.63 16 27 H 0.24 14.81 8.31 -92.71 -0.77 14.04 16 28 H 0.06 2.50 8.03 -2.37 -0.02 2.48 16 29 H 0.05 1.80 8.05 -2.39 -0.02 1.78 16 30 H 0.06 2.51 6.78 -2.46 -0.02 2.49 16 31 H 0.09 2.40 8.15 -2.32 -0.02 2.38 16 32 H 0.41 10.60 8.45 -92.61 -0.78 9.82 16 33 H 0.09 2.14 7.93 -2.42 -0.02 2.12 16 34 H 0.13 2.62 8.15 -2.34 -0.02 2.60 16 35 H 0.15 3.90 4.65 -2.38 -0.01 3.89 16 36 H 0.06 1.94 7.79 -2.36 -0.02 1.92 16 37 H 0.24 3.94 8.06 -2.91 -0.02 3.92 16 38 H 0.31 -0.79 8.06 -2.91 -0.02 -0.82 16 39 H 0.03 1.67 6.90 -2.29 -0.02 1.66 16 40 H 0.06 2.99 6.14 -2.38 -0.01 2.97 16 41 H 0.04 1.63 6.22 -2.40 -0.01 1.61 16 42 H 0.04 2.23 6.02 -2.29 -0.01 2.21 16 Total: -1.00 -83.18 335.15 1.74 -81.44 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.30 Total: 18.19 kcal Atomic # 6 Polarization: 47.84 SS G_CDS: 7.42 Total: 55.26 kcal Atomic # 7 Polarization: -141.96 SS G_CDS: -7.90 Total: -149.86 kcal Atomic # 8 Polarization: -54.46 SS G_CDS: -0.11 Total: -54.56 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Total: -83.18 1.74 -81.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070946009.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.647 kcal (2) G-P(sol) polarization free energy of solvation -83.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds