Wall clock time and date at job start Tue Mar 31 2020 05:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99780 * 2 1 4 4 H 1.48496 * 109.47389 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46786 * 300.00156 * 3 2 1 6 6 H 1.48501 * 109.47113 * 59.99981 * 3 2 1 7 7 C 1.38807 * 120.00580 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00516 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99658 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64998 * 359.95821 * 9 7 2 11 11 C 1.54915 * 104.83334 * 204.16451 * 10 9 7 12 12 C 1.55165 * 101.57980 * 322.99105 * 11 10 9 13 13 O 1.42893 * 110.71912 * 277.13741 * 12 11 10 14 14 C 1.52997 * 110.71789 * 153.86302 * 12 11 10 15 15 N 1.46495 * 109.47259 * 190.02246 * 14 12 11 16 16 C 1.34770 * 120.00429 * 180.02562 * 15 14 12 17 17 O 1.21611 * 120.00150 * 0.02562 * 16 15 14 18 18 C 1.47394 * 120.00411 * 179.97438 * 16 15 14 19 19 C 1.38212 * 126.45819 * 0.03004 * 18 16 15 20 20 N 1.34267 * 108.39090 * 179.97438 * 19 18 16 21 21 H 0.97000 * 125.38576 * 180.02562 * 20 19 18 22 22 C 1.37775 * 109.21855 * 0.02562 * 20 19 18 23 23 C 1.46818 * 125.84946 * 180.02562 * 22 20 19 24 24 N 1.34779 * 119.99795 * 359.97335 * 23 22 20 25 25 O 1.21671 * 119.99942 * 179.97438 * 23 22 20 26 26 C 1.36350 * 108.30289 * 359.72192 * 22 20 19 27 27 C 1.47022 * 125.64666 * 180.02562 * 9 7 2 28 28 H 0.96996 * 120.00418 * 359.97438 * 1 2 3 29 29 H 1.08997 * 110.36855 * 323.00192 * 10 9 7 30 30 H 1.08997 * 110.36655 * 85.33065 * 10 9 7 31 31 H 1.08995 * 111.00392 * 204.91661 * 11 10 9 32 32 H 1.09001 * 111.00387 * 81.05917 * 11 10 9 33 33 H 0.96700 * 114.00032 * 174.97920 * 13 12 11 34 34 H 1.08996 * 109.47357 * 310.02663 * 14 12 11 35 35 H 1.09006 * 109.46855 * 70.02454 * 14 12 11 36 36 H 0.97003 * 119.99519 * 359.97438 * 15 14 12 37 37 H 1.08000 * 125.80342 * 0.03129 * 19 18 16 38 38 H 0.97003 * 120.00005 * 359.97438 * 24 23 22 39 39 H 0.96999 * 119.99862 * 180.02562 * 24 23 22 40 40 H 1.07997 * 126.49739 * 180.26775 * 26 22 20 41 41 H 1.08997 * 109.88723 * 59.48965 * 27 9 7 42 42 H 1.08998 * 109.88661 * 298.31946 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1414 -2.5332 0.0009 11 6 -0.4009 -3.9323 0.6133 12 6 0.7787 -4.7525 0.0273 13 8 0.4727 -5.2058 -1.2928 14 6 1.1244 -5.9311 0.9396 15 7 2.3797 -6.5412 0.4946 16 6 2.8831 -7.6040 1.1531 17 8 2.2949 -8.0568 2.1163 18 6 4.1458 -8.2182 0.7050 19 6 4.9203 -7.8153 -0.3665 20 7 5.9876 -8.6260 -0.4463 21 1 6.6922 -8.5633 -1.1099 22 6 5.9234 -9.5610 0.5637 23 6 6.9048 -10.6236 0.8153 24 7 7.9857 -10.7448 0.0194 25 8 6.7422 -11.3947 1.7423 26 6 4.7959 -9.3262 1.2935 27 6 1.9320 -3.7274 -0.0005 28 1 -0.4850 0.8400 0.0004 29 1 -0.5987 -1.7588 0.6167 30 1 -0.5281 -2.4872 -1.0172 31 1 -1.3585 -4.3328 0.2808 32 1 -0.3501 -3.8979 1.7016 33 1 1.2054 -5.6576 -1.7333 34 1 1.2357 -5.5769 1.9643 35 1 0.3252 -6.6710 0.8957 36 1 2.8483 -6.1807 -0.2744 37 1 4.7042 -6.9884 -1.0267 38 1 8.1151 -10.1302 -0.7198 39 1 8.6339 -11.4470 0.1855 40 1 4.4617 -9.8831 2.1564 41 1 2.5590 -3.8505 0.8825 42 1 2.5279 -3.8646 -0.9028 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672044708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:14 Heat of formation + Delta-G solvation = -47.742048 kcal Electronic energy + Delta-G solvation = -26671.720812 eV Core-core repulsion = 22653.308536 eV Total energy + Delta-G solvation = -4018.412277 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.95857 -39.71957 -39.15499 -38.22414 -35.12950 -34.30796 -34.15962 -32.15287 -31.69299 -30.20110 -29.43774 -28.04374 -25.82467 -24.12365 -23.51388 -22.65359 -20.69500 -20.47615 -19.93083 -19.71226 -19.44953 -17.57852 -16.99325 -16.89489 -16.40701 -15.96436 -15.72311 -15.41145 -15.11707 -14.77248 -14.40917 -14.31711 -14.00194 -13.90300 -13.76223 -13.47747 -13.17773 -12.92241 -12.68457 -12.21756 -12.12114 -11.60321 -11.06195 -10.92200 -10.76993 -10.75286 -10.38780 -10.30075 -10.16910 -10.14754 -9.82184 -9.74368 -9.50970 -9.41850 -9.04543 -8.76738 -8.68802 -6.89295 -5.69759 -3.12305 0.97780 1.57360 2.46148 2.87120 2.88554 3.25665 3.36346 3.41122 3.44204 3.46006 4.38295 4.41972 4.44469 4.47438 4.61874 4.82273 4.95773 5.18391 5.38498 5.44297 5.47075 5.59612 5.63748 5.90241 5.97800 6.03495 6.19410 6.22795 6.30044 6.36134 6.39550 6.48507 6.58518 6.62570 6.66186 6.82593 7.50713 7.53306 7.58177 7.69394 7.81696 7.92678 8.28152 8.31355 9.16620 9.77214 10.41454 11.33960 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018684 B = 0.002547 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.211195 B =10988.803316 C =11934.606661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.010 4.010 3 Si 0.915 3.085 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.600 5.600 10 C 0.155 3.845 11 C -0.128 4.128 12 C 0.105 3.895 13 O -0.543 6.543 14 C 0.106 3.894 15 N -0.725 5.725 16 C 0.587 3.413 17 O -0.540 6.540 18 C -0.228 4.228 19 C 0.079 3.921 20 N -0.526 5.526 21 H 0.420 0.580 22 C -0.074 4.074 23 C 0.596 3.404 24 N -0.857 5.857 25 O -0.526 6.526 26 C -0.037 4.037 27 C 0.116 3.884 28 H 0.253 0.747 29 H 0.108 0.892 30 H 0.018 0.982 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.364 0.636 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.395 0.605 37 H 0.184 0.816 38 H 0.395 0.605 39 H 0.409 0.591 40 H 0.160 0.840 41 H 0.032 0.968 42 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.460 -18.124 -5.113 23.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.206 4.206 3 Si 0.746 3.254 4 H -0.206 1.206 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.353 4.353 8 H 0.095 0.905 9 N -0.326 5.326 10 C 0.031 3.969 11 C -0.167 4.167 12 C 0.063 3.937 13 O -0.347 6.347 14 C -0.018 4.018 15 N -0.376 5.376 16 C 0.375 3.625 17 O -0.418 6.418 18 C -0.237 4.237 19 C -0.063 4.063 20 N -0.121 5.121 21 H 0.258 0.742 22 C -0.184 4.184 23 C 0.382 3.618 24 N -0.420 5.420 25 O -0.402 6.402 26 C -0.063 4.063 27 C -0.010 4.010 28 H 0.063 0.937 29 H 0.126 0.874 30 H 0.036 0.964 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.210 0.790 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.229 0.771 37 H 0.201 0.799 38 H 0.223 0.777 39 H 0.240 0.760 40 H 0.177 0.823 41 H 0.050 0.950 42 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 12.279 -18.404 -3.680 22.428 hybrid contribution 2.031 0.931 -1.367 2.619 sum 14.309 -17.473 -5.047 23.142 Atomic orbital electron populations 1.69800 1.04896 1.24784 1.57274 1.24803 0.95740 0.97771 1.02256 0.85996 0.78562 0.83577 0.77303 1.20580 1.21730 1.21657 1.19083 0.90443 0.82372 1.43447 0.90509 1.44422 1.02021 0.99332 1.86824 1.21947 0.84412 0.91907 0.98650 1.23058 0.95639 0.98194 0.99829 1.22562 0.97854 0.91102 0.82143 1.86633 1.41477 1.78189 1.28407 1.22076 0.85249 0.95190 0.99247 1.45818 1.25855 1.32263 1.33708 1.17332 0.83393 0.79361 0.82422 1.90795 1.60890 1.62775 1.27296 1.19734 0.99446 1.03113 1.01453 1.22546 0.87838 0.96423 0.99515 1.41667 1.20806 1.24416 1.25241 0.74230 1.19966 1.02226 0.98733 0.97498 1.17023 0.80293 0.82713 0.81765 1.43706 1.26469 1.37609 1.34264 1.90920 1.75776 1.43179 1.30293 1.21148 0.91385 0.95211 0.98528 1.21923 0.93741 0.87257 0.98125 0.93658 0.87441 0.96366 0.91037 0.90532 0.79048 0.90210 0.90616 0.77084 0.79869 0.77720 0.75976 0.82255 0.95031 0.96126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.45 10.09 55.49 0.56 -25.89 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 3 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 7 C -0.23 -6.11 10.27 -15.06 -0.15 -6.27 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.60 -14.88 3.39 -170.07 -0.58 -15.46 16 10 C 0.16 3.75 5.88 -2.53 -0.01 3.73 16 11 C -0.13 -2.41 6.26 -24.57 -0.15 -2.57 16 12 C 0.10 1.72 0.92 -88.78 -0.08 1.64 16 13 O -0.54 -8.55 13.10 -35.23 -0.46 -9.01 16 14 C 0.11 1.53 4.81 -4.05 -0.02 1.51 16 15 N -0.72 -8.63 5.15 -61.40 -0.32 -8.94 16 16 C 0.59 8.02 7.81 -12.54 -0.10 7.92 16 17 O -0.54 -9.63 16.92 5.27 0.09 -9.54 16 18 C -0.23 -2.43 6.13 -105.02 -0.64 -3.08 16 19 C 0.08 0.50 11.43 -16.50 -0.19 0.31 16 20 N -0.53 -2.55 5.91 -9.30 -0.05 -2.60 16 21 H 0.42 0.32 8.14 -40.82 -0.33 -0.02 16 22 C -0.07 -0.63 6.99 -82.41 -0.58 -1.21 16 23 C 0.60 5.29 8.06 -12.79 -0.10 5.18 16 24 N -0.86 -3.34 8.87 30.29 0.27 -3.07 16 25 O -0.53 -7.05 17.69 5.21 0.09 -6.96 16 26 C -0.04 -0.42 10.37 -39.10 -0.41 -0.82 16 27 C 0.12 2.22 5.76 -3.06 -0.02 2.20 16 28 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.11 2.90 5.87 -51.93 -0.31 2.59 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.08 1.37 7.96 -51.93 -0.41 0.96 16 33 H 0.36 4.06 8.48 45.56 0.39 4.45 16 34 H 0.08 1.24 8.03 -51.93 -0.42 0.83 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.40 3.59 6.40 -40.82 -0.26 3.32 16 37 H 0.18 0.54 7.44 -52.49 -0.39 0.15 16 38 H 0.40 0.21 7.91 -40.82 -0.32 -0.11 16 39 H 0.41 1.20 8.93 -40.82 -0.36 0.83 16 40 H 0.16 2.01 8.06 -52.49 -0.42 1.58 16 41 H 0.03 0.60 7.82 -51.93 -0.41 0.20 16 42 H 0.02 0.37 8.06 -51.93 -0.42 -0.04 16 LS Contribution 355.84 15.07 5.36 5.36 Total: -1.00 -38.62 355.84 -7.10 -45.72 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -4.48 Total: 5.60 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: -2.55 Total: 8.19 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: -0.12 Total: -55.96 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.28 Total: -25.51 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -38.62 -7.10 -45.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672044708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.022 kcal (2) G-P(sol) polarization free energy of solvation -38.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds