Wall clock time and date at job start Tue Mar 31 2020 05:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99780 * 2 1 4 4 H 1.48496 * 109.47389 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46786 * 300.00156 * 3 2 1 6 6 H 1.48501 * 109.47113 * 59.99981 * 3 2 1 7 7 C 1.38807 * 120.00580 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00516 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99658 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64998 * 359.95821 * 9 7 2 11 11 C 1.54915 * 104.83334 * 204.16451 * 10 9 7 12 12 C 1.55165 * 101.57980 * 322.99105 * 11 10 9 13 13 O 1.42893 * 110.71912 * 277.13741 * 12 11 10 14 14 C 1.52997 * 110.71789 * 153.86302 * 12 11 10 15 15 N 1.46495 * 109.47259 * 190.02246 * 14 12 11 16 16 C 1.34770 * 120.00429 * 180.02562 * 15 14 12 17 17 O 1.21611 * 120.00150 * 0.02562 * 16 15 14 18 18 C 1.47394 * 120.00411 * 179.97438 * 16 15 14 19 19 C 1.38212 * 126.45819 * 0.03004 * 18 16 15 20 20 N 1.34267 * 108.39090 * 179.97438 * 19 18 16 21 21 H 0.97000 * 125.38576 * 180.02562 * 20 19 18 22 22 C 1.37775 * 109.21855 * 0.02562 * 20 19 18 23 23 C 1.46818 * 125.84946 * 180.02562 * 22 20 19 24 24 N 1.34779 * 119.99795 * 359.97335 * 23 22 20 25 25 O 1.21671 * 119.99942 * 179.97438 * 23 22 20 26 26 C 1.36350 * 108.30289 * 359.72192 * 22 20 19 27 27 C 1.47022 * 125.64666 * 180.02562 * 9 7 2 28 28 H 0.96996 * 120.00418 * 359.97438 * 1 2 3 29 29 H 1.08997 * 110.36855 * 323.00192 * 10 9 7 30 30 H 1.08997 * 110.36655 * 85.33065 * 10 9 7 31 31 H 1.08995 * 111.00392 * 204.91661 * 11 10 9 32 32 H 1.09001 * 111.00387 * 81.05917 * 11 10 9 33 33 H 0.96700 * 114.00032 * 174.97920 * 13 12 11 34 34 H 1.08996 * 109.47357 * 310.02663 * 14 12 11 35 35 H 1.09006 * 109.46855 * 70.02454 * 14 12 11 36 36 H 0.97003 * 119.99519 * 359.97438 * 15 14 12 37 37 H 1.08000 * 125.80342 * 0.03129 * 19 18 16 38 38 H 0.97003 * 120.00005 * 359.97438 * 24 23 22 39 39 H 0.96999 * 119.99862 * 180.02562 * 24 23 22 40 40 H 1.07997 * 126.49739 * 180.26775 * 26 22 20 41 41 H 1.08997 * 109.88723 * 59.48965 * 27 9 7 42 42 H 1.08998 * 109.88661 * 298.31946 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1414 -2.5332 0.0009 11 6 -0.4009 -3.9323 0.6133 12 6 0.7787 -4.7525 0.0273 13 8 0.4727 -5.2058 -1.2928 14 6 1.1244 -5.9311 0.9396 15 7 2.3797 -6.5412 0.4946 16 6 2.8831 -7.6040 1.1531 17 8 2.2949 -8.0568 2.1163 18 6 4.1458 -8.2182 0.7050 19 6 4.9203 -7.8153 -0.3665 20 7 5.9876 -8.6260 -0.4463 21 1 6.6922 -8.5633 -1.1099 22 6 5.9234 -9.5610 0.5637 23 6 6.9048 -10.6236 0.8153 24 7 7.9857 -10.7448 0.0194 25 8 6.7422 -11.3947 1.7423 26 6 4.7959 -9.3262 1.2935 27 6 1.9320 -3.7274 -0.0005 28 1 -0.4850 0.8400 0.0004 29 1 -0.5987 -1.7588 0.6167 30 1 -0.5281 -2.4872 -1.0172 31 1 -1.3585 -4.3328 0.2808 32 1 -0.3501 -3.8979 1.7016 33 1 1.2054 -5.6576 -1.7333 34 1 1.2357 -5.5769 1.9643 35 1 0.3252 -6.6710 0.8957 36 1 2.8483 -6.1807 -0.2744 37 1 4.7042 -6.9884 -1.0267 38 1 8.1151 -10.1302 -0.7198 39 1 8.6339 -11.4470 0.1855 40 1 4.4617 -9.8831 2.1564 41 1 2.5590 -3.8505 0.8825 42 1 2.5279 -3.8646 -0.9028 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672044708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:14 Heat of formation + Delta-G solvation = -83.536451 kcal Electronic energy + Delta-G solvation = -26673.272974 eV Core-core repulsion = 22653.308536 eV Total energy + Delta-G solvation = -4019.964438 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.62075 -40.85885 -40.01366 -39.46528 -36.75038 -35.31741 -34.90168 -33.94774 -32.45553 -31.42542 -30.71485 -29.41772 -27.46112 -25.59629 -24.19157 -23.75648 -22.18476 -21.32457 -21.28519 -20.76503 -20.09439 -18.86963 -18.34435 -17.78443 -17.32795 -16.87081 -16.72131 -16.53207 -16.46106 -16.12164 -15.68104 -15.50659 -15.14857 -14.91404 -14.75605 -14.53881 -14.45395 -14.29167 -13.85451 -13.57930 -13.39403 -13.25373 -12.88553 -12.77606 -12.31443 -12.03846 -11.96256 -11.75997 -11.59470 -11.53677 -11.07887 -10.85145 -10.83670 -10.72184 -10.31662 -10.04053 -9.43291 -8.87095 -7.74958 -5.19531 0.35056 0.74775 1.49218 1.50212 1.60107 1.93290 2.12095 2.15833 2.50695 2.53107 2.54170 3.22505 3.35826 3.48820 3.74533 3.82074 3.92210 3.97158 3.99831 4.08530 4.22042 4.54021 4.64430 4.67417 4.79977 4.86252 4.89034 5.00084 5.03463 5.14933 5.31354 5.39381 5.50110 5.50282 5.64759 5.78009 5.83120 6.25085 6.32079 6.43062 6.59536 6.88476 7.12009 7.17052 7.29749 7.79870 8.43590 9.27444 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018684 B = 0.002547 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.211195 B =10988.803316 C =11934.606661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.071 4.071 3 Si 0.980 3.020 4 H -0.263 1.263 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.234 4.234 8 H 0.087 0.913 9 N -0.623 5.623 10 C 0.160 3.840 11 C -0.123 4.123 12 C 0.128 3.872 13 O -0.553 6.553 14 C 0.120 3.880 15 N -0.709 5.709 16 C 0.587 3.413 17 O -0.594 6.594 18 C -0.263 4.263 19 C 0.120 3.880 20 N -0.497 5.497 21 H 0.445 0.555 22 C -0.070 4.070 23 C 0.594 3.406 24 N -0.828 5.828 25 O -0.582 6.582 26 C -0.071 4.071 27 C 0.113 3.887 28 H 0.246 0.754 29 H 0.073 0.927 30 H -0.014 1.014 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.387 0.613 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.412 0.588 37 H 0.231 0.769 38 H 0.415 0.585 39 H 0.417 0.583 40 H 0.129 0.871 41 H 0.038 0.962 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.326 -18.454 -7.453 25.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.263 4.263 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.363 4.363 8 H 0.105 0.895 9 N -0.349 5.349 10 C 0.035 3.965 11 C -0.162 4.162 12 C 0.086 3.914 13 O -0.361 6.361 14 C -0.005 4.005 15 N -0.362 5.362 16 C 0.377 3.623 17 O -0.475 6.475 18 C -0.272 4.272 19 C -0.025 4.025 20 N -0.093 5.093 21 H 0.288 0.712 22 C -0.181 4.181 23 C 0.380 3.620 24 N -0.393 5.393 25 O -0.462 6.462 26 C -0.098 4.098 27 C -0.013 4.013 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.004 0.996 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.236 0.764 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.250 0.750 37 H 0.247 0.753 38 H 0.247 0.753 39 H 0.250 0.750 40 H 0.147 0.853 41 H 0.056 0.944 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 15.267 -18.754 -6.128 24.947 hybrid contribution 1.211 0.989 -0.730 1.726 sum 16.478 -17.765 -6.858 25.182 Atomic orbital electron populations 1.70062 1.06343 1.24904 1.58764 1.25659 0.96590 1.01126 1.02943 0.84982 0.78270 0.79394 0.76505 1.18677 1.22190 1.22202 1.19506 0.91131 0.83519 1.42109 0.89546 1.44706 1.02466 1.00929 1.86820 1.21640 0.84431 0.94037 0.96441 1.22912 0.97543 0.95589 1.00139 1.22151 0.95411 0.90922 0.82925 1.86603 1.43025 1.78463 1.27975 1.21746 0.86458 0.94275 0.98003 1.45562 1.24985 1.31660 1.33964 1.17747 0.83914 0.79044 0.81584 1.90766 1.62607 1.64385 1.29765 1.19492 0.99503 1.04138 1.04070 1.23066 0.86085 0.95911 0.97433 1.41578 1.20922 1.22545 1.24296 0.71200 1.19712 1.01245 0.99220 0.97951 1.17118 0.81146 0.82177 0.81567 1.43460 1.24711 1.37632 1.33470 1.90898 1.77187 1.45225 1.32873 1.21062 0.93357 0.96360 0.98996 1.22148 0.94698 0.85204 0.99229 0.94430 0.90946 0.99567 0.89776 0.89849 0.76371 0.91455 0.90625 0.75050 0.75272 0.75330 0.75000 0.85339 0.94393 0.93697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.28 10.09 21.65 0.22 -56.06 16 2 C -0.07 -3.93 5.49 84.86 0.47 -3.47 16 3 Si 0.98 44.50 29.55 68.60 2.03 46.53 16 4 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 7 C -0.23 -12.54 10.27 84.03 0.86 -11.68 16 8 H 0.09 4.35 7.83 -2.91 -0.02 4.33 16 9 N -0.62 -30.57 3.39 -691.99 -2.35 -32.92 16 10 C 0.16 7.84 5.88 86.86 0.51 8.35 16 11 C -0.12 -4.56 6.26 31.99 0.20 -4.36 16 12 C 0.13 3.92 0.92 -9.60 -0.01 3.91 16 13 O -0.55 -15.79 13.10 -148.98 -1.95 -17.74 16 14 C 0.12 3.23 4.81 86.38 0.42 3.65 16 15 N -0.71 -15.03 5.15 -466.42 -2.40 -17.44 16 16 C 0.59 15.47 7.81 86.66 0.68 16.15 16 17 O -0.59 -21.75 16.92 -4.07 -0.07 -21.82 16 18 C -0.26 -5.18 6.13 -20.12 -0.12 -5.30 16 19 C 0.12 0.96 11.43 84.31 0.96 1.92 16 20 N -0.50 -2.63 5.91 -183.34 -1.08 -3.71 16 21 H 0.44 -1.91 8.14 -92.71 -0.75 -2.66 16 22 C -0.07 -1.08 6.99 40.01 0.28 -0.80 16 23 C 0.59 9.85 8.06 86.49 0.70 10.54 16 24 N -0.83 -4.13 8.87 -176.30 -1.56 -5.69 16 25 O -0.58 -16.02 17.69 -4.26 -0.08 -16.09 16 26 C -0.07 -1.64 10.37 22.58 0.23 -1.41 16 27 C 0.11 4.02 5.76 86.73 0.50 4.52 16 28 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 29 H 0.07 4.07 5.87 -2.39 -0.01 4.06 16 30 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 31 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 32 H 0.08 2.96 7.96 -2.39 -0.02 2.95 16 33 H 0.39 6.97 8.48 -74.06 -0.63 6.34 16 34 H 0.07 2.03 8.03 -2.39 -0.02 2.01 16 35 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 36 H 0.41 5.66 6.40 -92.71 -0.59 5.07 16 37 H 0.23 -0.31 7.44 -2.91 -0.02 -0.33 16 38 H 0.42 -1.31 7.91 -92.71 -0.73 -2.04 16 39 H 0.42 1.39 8.93 -92.71 -0.83 0.56 16 40 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 41 H 0.04 1.34 7.82 -2.39 -0.02 1.32 16 42 H 0.05 1.42 8.06 -2.39 -0.02 1.40 16 Total: -1.00 -90.59 355.84 -3.98 -94.57 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -2.40 Total: 8.34 kcal Atomic # 6 Polarization: 16.35 SS G_CDS: 5.67 Total: 22.03 kcal Atomic # 7 Polarization: -108.64 SS G_CDS: -7.18 Total: -115.82 kcal Atomic # 8 Polarization: -53.55 SS G_CDS: -2.10 Total: -55.64 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -90.59 -3.98 -94.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672044708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.029 kcal (2) G-P(sol) polarization free energy of solvation -90.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds