Wall clock time and date at job start Tue Mar 31 2020 04:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.31002 * 119.99907 * 2 1 4 4 C 1.50704 * 120.00007 * 0.02562 * 3 2 1 5 5 C 1.53001 * 109.47083 * 124.99880 * 4 3 2 6 6 H 1.08999 * 109.46935 * 304.99932 * 5 4 3 7 7 C 1.52999 * 109.46944 * 185.00194 * 5 4 3 8 8 O 1.42897 * 109.47242 * 304.99624 * 7 5 4 9 9 N 1.46499 * 109.47193 * 64.99991 * 5 4 3 10 10 C 1.34777 * 119.99665 * 205.27836 * 9 5 4 11 11 O 1.21363 * 120.00411 * 359.72017 * 10 9 5 12 12 C 1.49313 * 119.99574 * 179.72291 * 10 9 5 13 13 O 1.21403 * 120.00043 * 0.02562 * 12 10 9 14 14 N 1.34777 * 119.99573 * 179.97438 * 12 10 9 15 15 C 1.40290 * 119.99703 * 180.02562 * 14 12 10 16 16 C 1.40724 * 126.10145 * 359.69540 * 15 14 12 17 17 N 1.30879 * 108.37757 * 179.81375 * 16 15 14 18 18 N 1.40060 * 108.43473 * 0.44401 * 17 16 15 19 19 C 1.37297 * 126.05766 * 179.69683 * 18 17 16 20 20 H 1.07999 * 120.00035 * 180.02562 * 19 18 17 21 21 C 1.39005 * 119.99640 * 0.02562 * 19 18 17 22 22 N 1.31277 * 120.00165 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99678 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47348 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46763 * 120.00292 * 23 21 19 26 26 H 1.48498 * 109.46979 * 239.99910 * 23 21 19 27 27 C 1.35790 * 126.09981 * 180.02562 * 15 14 12 28 28 H 1.08999 * 109.47375 * 59.99777 * 1 2 3 29 29 H 1.08999 * 109.46798 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46834 * 299.99679 * 1 2 3 31 31 H 1.07994 * 120.00121 * 180.02562 * 2 1 3 32 32 H 1.08000 * 119.99901 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47035 * 4.99637 * 4 3 2 34 34 H 1.08994 * 109.46967 * 244.99675 * 4 3 2 35 35 H 1.09000 * 109.47286 * 64.99872 * 7 5 4 36 36 H 1.09000 * 109.47078 * 185.00075 * 7 5 4 37 37 H 0.96699 * 114.00473 * 180.02562 * 8 7 5 38 38 H 0.97001 * 119.99790 * 24.99549 * 9 5 4 39 39 H 0.97000 * 120.00483 * 0.02562 * 14 12 10 40 40 H 1.08003 * 125.81094 * 359.97438 * 16 15 14 41 41 H 0.97001 * 120.00189 * 180.02562 * 22 21 19 42 42 H 1.07995 * 126.25134 * 359.96521 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4085 2.4396 0.0006 5 6 1.8705 3.2947 1.1823 6 1 1.7587 2.7279 2.1065 7 6 1.0197 4.5642 1.2565 8 8 1.0739 5.2479 0.0029 9 7 3.2775 3.6597 1.0004 10 6 4.0427 3.9483 2.0717 11 8 3.5648 3.9108 3.1866 12 6 5.4785 4.3142 1.8867 13 8 5.9564 4.3523 0.7714 14 7 6.2435 4.6033 2.9580 15 6 7.5923 4.9477 2.7842 16 6 8.2769 5.0249 1.5572 17 7 9.5140 5.3791 1.7964 18 7 9.6714 5.5316 3.1798 19 6 10.8279 5.8903 3.8268 20 1 10.8393 5.9791 4.9031 21 6 11.9843 6.1392 3.0966 22 7 11.9706 6.0307 1.7884 23 14 13.5581 6.6265 3.9771 24 1 13.3115 6.6764 5.4406 25 1 14.6170 5.6263 3.6878 26 1 13.9971 7.9634 3.5026 27 6 8.4718 5.2599 3.7706 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.0470 -0.9352 -0.0004 32 1 3.2420 1.1345 0.0004 33 1 0.3403 2.2424 0.0905 34 1 1.6026 2.9716 -0.9307 35 1 -0.0130 4.2970 1.4802 36 1 1.4051 5.2145 2.0418 37 1 0.5563 6.0644 -0.0227 38 1 3.6595 3.6897 0.1092 39 1 5.8616 4.5733 3.8491 40 1 7.8530 4.8282 0.5835 41 1 12.7776 6.2040 1.2789 42 1 8.2603 5.2886 4.8292 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116631476.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:29 Heat of formation + Delta-G solvation = -19.894231 kcal Electronic energy + Delta-G solvation = -26332.326663 eV Core-core repulsion = 22315.121959 eV Total energy + Delta-G solvation = -4017.204705 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.57896 -39.61642 -38.37140 -37.44281 -36.24399 -34.80096 -34.02688 -33.14561 -30.80031 -30.30517 -28.16239 -27.94082 -25.60982 -25.46176 -24.08355 -21.49979 -20.92501 -20.33209 -19.46973 -18.87012 -18.06575 -17.76914 -17.39473 -16.40380 -15.96326 -15.60200 -15.54511 -15.39428 -15.06541 -14.69336 -14.37161 -14.00162 -13.73417 -13.65190 -13.51282 -13.34651 -13.00971 -12.97914 -12.52152 -12.13680 -11.80258 -11.73609 -11.66334 -11.54653 -11.30328 -11.20289 -11.01313 -10.84113 -10.52737 -10.33510 -10.28459 -9.35514 -9.23037 -9.14609 -9.08795 -8.86702 -8.12148 -6.77025 -6.60088 -4.27223 1.67156 1.97897 2.60867 2.92711 3.04151 3.09953 3.33587 3.72286 3.75590 3.96631 4.00925 4.37998 4.43490 4.60708 4.70292 4.81844 4.93186 4.98574 5.02355 5.03641 5.09239 5.17563 5.33873 5.36968 5.44252 5.64513 5.77661 5.86438 6.20584 6.24214 6.36953 6.42567 6.59922 6.76965 6.89691 6.93718 7.16904 7.26364 7.33741 7.77837 7.87525 8.11841 8.19377 8.50145 8.70536 9.31960 9.60662 10.35785 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027116 B = 0.002245 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.340870 B =12467.954517 C =12755.664963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.165 4.165 3 C -0.160 4.160 4 C -0.099 4.099 5 C 0.153 3.847 6 H 0.104 0.896 7 C 0.062 3.938 8 O -0.567 6.567 9 N -0.690 5.690 10 C 0.516 3.484 11 O -0.533 6.533 12 C 0.483 3.517 13 O -0.521 6.521 14 N -0.584 5.584 15 C -0.069 4.069 16 C -0.027 4.027 17 N -0.260 5.260 18 N -0.139 5.139 19 C -0.321 4.321 20 H 0.118 0.882 21 C 0.046 3.954 22 N -0.767 5.767 23 Si 0.936 3.064 24 H -0.262 1.262 25 H -0.273 1.273 26 H -0.273 1.273 27 C -0.078 4.078 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.379 0.621 38 H 0.416 0.584 39 H 0.409 0.591 40 H 0.178 0.822 41 H 0.275 0.725 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.333 -5.905 -1.140 22.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.183 4.183 3 C -0.178 4.178 4 C -0.136 4.136 5 C 0.048 3.952 6 H 0.121 0.879 7 C -0.017 4.017 8 O -0.372 6.372 9 N -0.344 5.344 10 C 0.298 3.702 11 O -0.410 6.410 12 C 0.264 3.736 13 O -0.398 6.398 14 N -0.227 5.227 15 C -0.175 4.175 16 C -0.203 4.203 17 N -0.091 5.091 18 N 0.094 4.906 19 C -0.454 4.454 20 H 0.136 0.864 21 C -0.172 4.172 22 N -0.394 5.394 23 Si 0.760 3.240 24 H -0.186 1.186 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.229 4.229 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.226 0.774 38 H 0.253 0.747 39 H 0.244 0.756 40 H 0.194 0.806 41 H 0.086 0.914 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -19.665 -6.126 -2.001 20.694 hybrid contribution -0.485 0.461 1.069 1.261 sum -20.150 -5.665 -0.932 20.952 Atomic orbital electron populations 1.20876 0.93482 1.02115 1.01825 1.22810 0.96156 0.97948 1.01435 1.22852 1.00060 0.93991 1.00915 1.20982 1.00262 0.93621 0.98767 1.21123 0.79947 0.93767 1.00353 0.87857 1.22648 0.98613 0.94126 0.86321 1.86475 1.74997 1.41512 1.34248 1.45702 1.10282 1.68011 1.10362 1.20321 0.87522 0.77548 0.84857 1.90717 1.74688 1.51469 1.24134 1.19657 0.86506 0.81981 0.85455 1.90660 1.73202 1.52089 1.23898 1.42146 1.08635 1.62805 1.09106 1.17256 0.83535 1.21884 0.94782 1.24153 0.91947 1.06410 0.97744 1.78262 1.15518 1.24254 0.91074 1.44574 1.05712 1.36120 1.04171 1.19967 0.85049 1.47763 0.92592 0.86400 1.25671 1.00095 0.95840 0.95575 1.70215 1.28802 1.34990 1.05367 0.85740 0.80019 0.78638 0.79623 1.18624 1.19870 1.19871 1.21304 0.87458 1.17136 0.97008 0.91668 0.92299 0.91639 0.87348 0.87009 0.89500 0.89232 0.92645 0.92738 0.77380 0.74720 0.75643 0.80554 0.91408 0.83367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.80 8.65 36.01 0.31 -0.49 16 2 C -0.17 -1.34 10.26 -36.02 -0.37 -1.71 16 3 C -0.16 -1.44 9.25 -36.02 -0.33 -1.77 16 4 C -0.10 -0.81 4.72 -27.88 -0.13 -0.94 16 5 C 0.15 1.49 2.36 -67.93 -0.16 1.33 16 6 H 0.10 1.06 7.57 -51.93 -0.39 0.67 16 7 C 0.06 0.53 6.85 37.16 0.25 0.79 16 8 O -0.57 -4.90 12.83 -35.23 -0.45 -5.35 16 9 N -0.69 -8.47 4.71 -54.28 -0.26 -8.73 16 10 C 0.52 7.87 7.85 -11.65 -0.09 7.78 16 11 O -0.53 -8.66 16.13 5.49 0.09 -8.57 16 12 C 0.48 8.88 7.85 -11.65 -0.09 8.79 16 13 O -0.52 -10.73 13.62 5.45 0.07 -10.66 16 14 N -0.58 -11.15 5.45 -10.45 -0.06 -11.21 16 15 C -0.07 -1.60 6.90 -83.92 -0.58 -2.18 16 16 C -0.03 -0.70 10.85 -17.02 -0.18 -0.89 16 17 N -0.26 -7.52 10.39 30.81 0.32 -7.20 16 18 N -0.14 -3.80 3.73 -11.40 -0.04 -3.84 16 19 C -0.32 -8.44 10.25 -14.82 -0.15 -8.59 16 20 H 0.12 2.77 7.83 -52.49 -0.41 2.36 16 21 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 22 N -0.77 -21.26 11.81 55.50 0.66 -20.60 16 23 Si 0.94 18.78 29.55 -169.99 -5.02 13.75 16 24 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 25 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 26 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 27 C -0.08 -1.84 11.50 -16.38 -0.19 -2.03 16 28 H 0.06 0.38 7.85 -51.93 -0.41 -0.03 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.38 7.66 -51.93 -0.40 -0.01 16 31 H 0.11 0.84 8.06 -52.49 -0.42 0.42 16 32 H 0.11 1.12 8.03 -52.49 -0.42 0.70 16 33 H 0.09 0.58 5.79 -51.93 -0.30 0.28 16 34 H 0.09 0.79 7.73 -51.93 -0.40 0.39 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.38 1.77 9.12 45.56 0.42 2.19 16 38 H 0.42 5.09 8.07 -40.82 -0.33 4.76 16 39 H 0.41 6.72 8.29 -40.82 -0.34 6.38 16 40 H 0.18 4.49 5.92 -52.48 -0.31 4.18 16 41 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.15 2.94 8.06 -52.49 -0.42 2.52 16 LS Contribution 365.05 15.07 5.50 5.50 Total: -1.00 -33.53 365.05 -5.55 -39.08 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -4.54 Total: 16.67 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -1.81 Total: 1.15 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: 0.62 Total: -51.57 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.29 Total: -24.58 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.02 Total: 13.75 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.53 -5.55 -39.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116631476.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.188 kcal (2) G-P(sol) polarization free energy of solvation -33.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds