Wall clock time and date at job start Tue Mar 31 2020 04:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.31004 * 119.99922 * 2 1 4 4 C 1.50701 * 119.99781 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47333 * 124.99841 * 4 3 2 6 6 H 1.08999 * 109.46909 * 54.99906 * 5 4 3 7 7 C 1.52996 * 109.47156 * 174.99565 * 5 4 3 8 8 O 1.42902 * 109.47108 * 55.00140 * 7 5 4 9 9 N 1.46491 * 109.47355 * 295.00087 * 5 4 3 10 10 C 1.34775 * 120.00602 * 154.99940 * 9 5 4 11 11 O 1.21366 * 119.99633 * 359.97438 * 10 9 5 12 12 C 1.49310 * 120.00762 * 179.97438 * 10 9 5 13 13 O 1.21407 * 119.99220 * 359.97438 * 12 10 9 14 14 N 1.34769 * 120.00412 * 180.02562 * 12 10 9 15 15 C 1.40291 * 120.00128 * 180.02562 * 14 12 10 16 16 C 1.40719 * 126.10262 * 359.97138 * 15 14 12 17 17 N 1.30876 * 108.38100 * 179.73879 * 16 15 14 18 18 N 1.40063 * 108.42913 * 0.44672 * 17 16 15 19 19 C 1.37301 * 126.05067 * 179.81431 * 18 17 16 20 20 H 1.08002 * 119.99622 * 179.68466 * 19 18 17 21 21 C 1.39003 * 119.99972 * 359.96617 * 19 18 17 22 22 N 1.31284 * 120.00043 * 359.72316 * 21 19 18 23 23 Si 1.86801 * 119.99884 * 179.72361 * 21 19 18 24 24 H 1.48494 * 109.47230 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.46780 * 119.99905 * 23 21 19 26 26 H 1.48493 * 109.47151 * 239.99809 * 23 21 19 27 27 C 1.35786 * 126.10012 * 179.97438 * 15 14 12 28 28 H 1.08999 * 109.47025 * 60.00074 * 1 2 3 29 29 H 1.08998 * 109.46972 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46717 * 300.00109 * 1 2 3 31 31 H 1.08005 * 119.99952 * 180.02562 * 2 1 3 32 32 H 1.07997 * 120.00300 * 359.97438 * 3 2 1 33 33 H 1.09003 * 109.47233 * 4.99439 * 4 3 2 34 34 H 1.09002 * 109.46796 * 245.00121 * 4 3 2 35 35 H 1.09001 * 109.47128 * 175.00361 * 7 5 4 36 36 H 1.09004 * 109.47712 * 295.00610 * 7 5 4 37 37 H 0.96697 * 113.99928 * 179.97438 * 8 7 5 38 38 H 0.97005 * 119.99874 * 334.99464 * 9 5 4 39 39 H 0.97005 * 119.99874 * 359.97438 * 14 12 10 40 40 H 1.08003 * 125.80725 * 0.02997 * 16 15 14 41 41 H 0.97004 * 119.99619 * 180.02562 * 22 21 19 42 42 H 1.08004 * 126.25530 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 3.6691 1.1345 -0.0006 5 6 4.1787 1.9621 -1.1822 6 1 3.7441 2.9608 -1.1405 7 6 5.7035 2.0661 -1.1121 8 8 6.2680 0.7548 -1.0492 9 7 3.7907 1.3127 -2.4367 10 6 3.6634 2.0428 -3.5624 11 8 3.8699 3.2385 -3.5366 12 6 3.2685 1.3809 -4.8411 13 8 3.0625 0.1847 -4.8669 14 7 3.1418 2.1110 -5.9668 15 6 2.7702 1.4891 -7.1682 16 6 2.5007 0.1192 -7.3439 17 7 2.1825 -0.0814 -8.5975 18 7 2.2457 1.1446 -9.2719 19 6 1.9845 1.3482 -10.6044 20 1 2.0585 2.3407 -11.0236 21 6 1.6191 0.2778 -11.4124 22 7 1.5290 -0.9287 -10.9027 23 14 1.2562 0.5561 -13.2236 24 1 1.4274 1.9952 -13.5473 25 1 2.1926 -0.2516 -14.0458 26 1 -0.1404 0.1459 -13.5173 27 6 2.6066 2.1016 -8.3689 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.0471 -0.9354 -0.0004 32 1 1.6221 2.0698 -0.0004 33 1 4.0324 0.1107 -0.0904 34 1 4.0327 1.5686 0.9308 35 1 6.0739 2.5791 -1.9997 36 1 5.9889 2.6275 -0.2224 37 1 7.2338 0.7442 -1.0031 38 1 3.6253 0.3571 -2.4572 39 1 3.3069 3.0667 -5.9462 40 1 2.5440 -0.6372 -6.5741 41 1 1.2743 -1.6757 -11.4668 42 1 2.7381 3.1542 -8.5722 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116631477.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:31 Heat of formation + Delta-G solvation = -22.445929 kcal Electronic energy + Delta-G solvation = -26441.912364 eV Core-core repulsion = 22424.597010 eV Total energy + Delta-G solvation = -4017.315355 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.55677 -39.60020 -38.32292 -37.38665 -36.03731 -34.70827 -33.99721 -33.14158 -31.20676 -30.30631 -28.42378 -27.95993 -25.47239 -24.72782 -23.97148 -21.33173 -20.85747 -20.40700 -19.65749 -19.43486 -18.13426 -17.74550 -17.38270 -16.49039 -15.76051 -15.62520 -15.47369 -15.10238 -14.78379 -14.53827 -14.21150 -14.01973 -13.79728 -13.63263 -13.50037 -13.23343 -13.00255 -12.95150 -12.76280 -12.30438 -11.77052 -11.73124 -11.55937 -11.37041 -11.29973 -11.17673 -11.14035 -10.83399 -10.52466 -10.29698 -10.27482 -9.30059 -9.22351 -9.16004 -9.03139 -8.86043 -8.11569 -6.76313 -6.59622 -4.26729 1.68896 2.03927 2.62634 2.93079 3.04450 3.10209 3.34718 3.73200 3.76298 3.97916 4.02384 4.38444 4.41014 4.61937 4.70183 4.87638 4.98997 5.02060 5.04127 5.06605 5.14779 5.30051 5.37966 5.45991 5.50757 5.71415 5.73493 5.90266 6.21109 6.25457 6.37643 6.51505 6.65817 6.77740 6.90221 6.94864 7.17455 7.28225 7.34529 7.78716 7.88819 8.13120 8.20051 8.51216 8.71347 9.32500 9.61213 10.36230 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020194 B = 0.002482 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.219930 B =11279.492773 C =11979.069793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.153 4.153 3 C -0.168 4.168 4 C -0.092 4.092 5 C 0.151 3.849 6 H 0.104 0.896 7 C 0.062 3.938 8 O -0.567 6.567 9 N -0.688 5.688 10 C 0.516 3.484 11 O -0.535 6.535 12 C 0.483 3.517 13 O -0.521 6.521 14 N -0.585 5.585 15 C -0.068 4.068 16 C -0.027 4.027 17 N -0.260 5.260 18 N -0.139 5.139 19 C -0.321 4.321 20 H 0.118 0.882 21 C 0.046 3.954 22 N -0.767 5.767 23 Si 0.936 3.064 24 H -0.262 1.262 25 H -0.273 1.273 26 H -0.273 1.273 27 C -0.078 4.078 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.379 0.621 38 H 0.416 0.584 39 H 0.409 0.591 40 H 0.178 0.822 41 H 0.275 0.725 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.606 5.393 19.683 20.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.171 4.171 3 C -0.186 4.186 4 C -0.129 4.129 5 C 0.047 3.953 6 H 0.122 0.878 7 C -0.017 4.017 8 O -0.373 6.373 9 N -0.341 5.341 10 C 0.298 3.702 11 O -0.412 6.412 12 C 0.264 3.736 13 O -0.398 6.398 14 N -0.227 5.227 15 C -0.174 4.174 16 C -0.203 4.203 17 N -0.091 5.091 18 N 0.094 4.906 19 C -0.454 4.454 20 H 0.136 0.864 21 C -0.172 4.172 22 N -0.394 5.394 23 Si 0.760 3.240 24 H -0.186 1.186 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.229 4.229 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.226 0.774 38 H 0.252 0.748 39 H 0.243 0.757 40 H 0.194 0.806 41 H 0.086 0.914 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.566 4.122 18.721 19.498 hybrid contribution 0.739 1.104 -0.138 1.336 sum 4.305 5.226 18.583 19.778 Atomic orbital electron populations 1.20862 0.93185 1.02451 1.01924 1.22901 0.96277 0.97993 0.99930 1.22748 0.95280 0.98385 1.02226 1.20872 0.92992 1.01989 0.97078 1.21115 0.92509 0.98336 0.83364 0.87839 1.22656 0.93827 0.84713 1.00530 1.86478 1.25411 1.27906 1.97470 1.45661 1.67979 1.13088 1.07339 1.20307 0.77725 0.86838 0.85356 1.90713 1.49937 1.14579 1.85955 1.19659 0.82157 0.87273 0.84489 1.90660 1.50000 1.14187 1.84942 1.42143 1.63042 1.11338 1.06222 1.17256 1.21782 0.93395 0.84998 1.24150 1.06015 0.94238 0.95850 1.78261 1.25202 1.02194 1.03441 1.44573 1.35970 1.03708 1.06351 1.19966 1.48212 0.96961 0.80247 0.86415 1.25668 0.95648 0.94599 1.01243 1.70221 1.33790 0.99181 1.36177 0.85740 0.78604 0.79343 0.80336 1.18638 1.19868 1.19878 1.21301 1.17039 0.95238 0.89335 0.91498 0.92024 0.91915 0.87342 0.87417 0.89817 0.89573 0.92761 0.92590 0.77395 0.74773 0.75660 0.80565 0.91424 0.83375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.09 10.17 36.01 0.37 -0.72 16 2 C -0.15 -1.40 9.87 -36.03 -0.36 -1.76 16 3 C -0.17 -1.50 8.88 -36.03 -0.32 -1.82 16 4 C -0.09 -0.74 4.92 -27.88 -0.14 -0.88 16 5 C 0.15 1.47 2.36 -67.94 -0.16 1.31 16 6 H 0.10 1.03 7.58 -51.93 -0.39 0.64 16 7 C 0.06 0.53 6.85 37.16 0.25 0.79 16 8 O -0.57 -4.97 12.83 -35.23 -0.45 -5.42 16 9 N -0.69 -8.62 4.73 -54.29 -0.26 -8.88 16 10 C 0.52 7.97 7.85 -11.65 -0.09 7.88 16 11 O -0.53 -8.71 16.14 5.48 0.09 -8.63 16 12 C 0.48 8.98 7.85 -11.65 -0.09 8.88 16 13 O -0.52 -10.84 13.62 5.45 0.07 -10.77 16 14 N -0.58 -11.23 5.45 -10.46 -0.06 -11.29 16 15 C -0.07 -1.60 6.90 -83.93 -0.58 -2.18 16 16 C -0.03 -0.70 10.84 -17.02 -0.18 -0.89 16 17 N -0.26 -7.53 10.39 30.81 0.32 -7.21 16 18 N -0.14 -3.81 3.73 -11.40 -0.04 -3.85 16 19 C -0.32 -8.46 10.25 -14.82 -0.15 -8.61 16 20 H 0.12 2.77 7.83 -52.49 -0.41 2.36 16 21 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 22 N -0.77 -21.25 11.81 55.50 0.66 -20.60 16 23 Si 0.94 18.78 29.55 -169.99 -5.02 13.76 16 24 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 25 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 26 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 27 C -0.08 -1.84 11.50 -16.38 -0.19 -2.03 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.11 0.95 7.84 -52.48 -0.41 0.54 16 32 H 0.11 0.94 8.05 -52.49 -0.42 0.52 16 33 H 0.08 0.74 7.38 -51.93 -0.38 0.35 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.38 1.81 9.12 45.56 0.42 2.23 16 38 H 0.42 5.30 8.07 -40.82 -0.33 4.98 16 39 H 0.41 6.76 8.29 -40.82 -0.34 6.42 16 40 H 0.18 4.51 5.92 -52.48 -0.31 4.20 16 41 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.15 2.95 8.06 -52.48 -0.42 2.52 16 LS Contribution 368.59 15.07 5.55 5.55 Total: -1.00 -33.55 368.59 -5.55 -39.11 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: -4.68 Total: 17.16 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -1.74 Total: 1.05 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: 0.62 Total: -51.82 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.29 Total: -24.81 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.02 Total: 13.76 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.55 -5.55 -39.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116631477.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.660 kcal (2) G-P(sol) polarization free energy of solvation -33.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds