Wall clock time and date at job start Tue Mar 31 2020 04:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.31001 * 119.99729 * 2 1 4 4 C 1.50706 * 119.99729 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47238 * 124.99727 * 4 3 2 6 6 H 1.09002 * 109.47196 * 304.99679 * 5 4 3 7 7 C 1.53000 * 109.47153 * 184.99569 * 5 4 3 8 8 O 1.42899 * 109.47359 * 305.00385 * 7 5 4 9 9 N 1.46500 * 109.47520 * 64.99759 * 5 4 3 10 10 C 1.34769 * 120.00478 * 205.00365 * 9 5 4 11 11 O 1.21368 * 120.00000 * 359.97438 * 10 9 5 12 12 C 1.49309 * 120.00551 * 179.97438 * 10 9 5 13 13 O 1.21407 * 119.99526 * 359.97438 * 12 10 9 14 14 N 1.34767 * 120.00448 * 179.97438 * 12 10 9 15 15 C 1.40293 * 120.00081 * 179.97438 * 14 12 10 16 16 C 1.40722 * 126.10142 * 359.69229 * 15 14 12 17 17 N 1.30879 * 108.37326 * 179.85027 * 16 15 14 18 18 N 1.40050 * 108.43847 * 0.40836 * 17 16 15 19 19 C 1.37300 * 126.05817 * 179.73781 * 18 17 16 20 20 H 1.07996 * 120.00467 * 179.97438 * 19 18 17 21 21 C 1.39009 * 119.99567 * 359.97438 * 19 18 17 22 22 N 1.31275 * 120.00188 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99913 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47091 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47305 * 120.00328 * 23 21 19 26 26 H 1.48502 * 109.47017 * 240.00099 * 23 21 19 27 27 C 1.35792 * 126.09866 * 179.97438 * 15 14 12 28 28 H 1.09006 * 109.47164 * 60.00379 * 1 2 3 29 29 H 1.08999 * 109.47056 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47645 * 300.00690 * 1 2 3 31 31 H 1.07997 * 120.00069 * 179.97438 * 2 1 3 32 32 H 1.07997 * 120.00202 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.46953 * 244.99339 * 4 3 2 34 34 H 1.09000 * 109.47318 * 4.98937 * 4 3 2 35 35 H 1.09004 * 109.46571 * 64.99968 * 7 5 4 36 36 H 1.08990 * 109.47081 * 184.99662 * 7 5 4 37 37 H 0.96695 * 113.99930 * 179.97438 * 8 7 5 38 38 H 0.97007 * 119.99345 * 24.99898 * 9 5 4 39 39 H 0.97007 * 120.00280 * 0.02562 * 14 12 10 40 40 H 1.08000 * 125.80796 * 359.97438 * 16 15 14 41 41 H 0.97003 * 120.00470 * 179.97438 * 22 21 19 42 42 H 1.08004 * 126.25342 * 359.94809 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1619 1.1345 0.0000 4 6 3.6690 1.1345 0.0006 5 6 4.1795 1.9616 -1.1810 6 1 3.7452 1.5809 -2.1055 7 6 5.7043 1.8597 -1.2539 8 8 6.2683 2.2490 0.0000 9 7 3.7918 3.3627 -1.0002 10 6 3.6654 4.1707 -2.0715 11 8 3.8731 3.7376 -3.1860 12 6 3.2698 5.5985 -1.8872 13 8 3.0615 6.0317 -0.7723 14 7 3.1439 6.4066 -2.9584 15 6 2.7716 7.7481 -2.7853 16 6 2.4942 8.3799 -1.5589 17 7 2.1867 9.6292 -1.7987 18 7 2.2457 9.8423 -3.1817 19 6 1.9844 11.0245 -3.8291 20 1 2.0604 11.0793 -4.9050 21 6 1.6219 12.1510 -3.0997 22 7 1.5300 12.0845 -1.7918 23 14 1.2656 13.7593 -3.9805 24 1 1.4392 13.5715 -5.4433 25 1 -0.1299 14.1803 -3.6970 26 1 2.2051 14.8048 -3.5012 27 6 2.6095 8.6671 -3.7717 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 2.0470 -0.9353 0.0004 32 1 1.6219 2.0698 -0.0004 33 1 4.0319 1.5692 0.9320 34 1 4.0324 0.1108 -0.0884 35 1 5.9894 0.8315 -1.4770 36 1 6.0753 2.5181 -2.0393 37 1 7.2340 2.2083 0.0265 38 1 3.6261 3.7090 -0.1093 39 1 3.3099 6.0604 -3.8493 40 1 2.5310 7.9138 -0.5854 41 1 1.2774 12.8707 -1.2827 42 1 2.7442 8.4986 -4.8300 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116631478.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:33 Heat of formation + Delta-G solvation = -22.482781 kcal Electronic energy + Delta-G solvation = -26275.505092 eV Core-core repulsion = 22258.188140 eV Total energy + Delta-G solvation = -4017.316953 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.57534 -39.61085 -38.33481 -37.40136 -36.06054 -34.76272 -34.03909 -33.15187 -31.19058 -30.31314 -28.46244 -27.97132 -25.49097 -24.79290 -23.95560 -21.35033 -20.89125 -20.34233 -19.70018 -19.46051 -18.18010 -17.78533 -17.39249 -16.43523 -15.77885 -15.63514 -15.47599 -15.11881 -14.86299 -14.62141 -14.17343 -14.02746 -13.93284 -13.67917 -13.53395 -13.37522 -13.01407 -12.98053 -12.43940 -12.23416 -11.81463 -11.73832 -11.58383 -11.54047 -11.30383 -11.21901 -11.19172 -10.84698 -10.52772 -10.33485 -10.28520 -9.34748 -9.23070 -9.13048 -9.07453 -8.86769 -8.12231 -6.77141 -6.60145 -4.27311 1.67058 1.98206 2.60651 2.92673 3.04137 3.09927 3.33504 3.72214 3.75516 3.96477 4.00963 4.37598 4.40133 4.60604 4.70097 4.80516 4.98504 4.99792 5.02482 5.03782 5.10041 5.24192 5.36847 5.43031 5.47187 5.65489 5.78034 5.81774 6.20456 6.23783 6.36856 6.46652 6.59885 6.76863 6.89615 6.93586 7.16808 7.26189 7.33778 7.77728 7.87409 8.11727 8.19292 8.50055 8.70440 9.31863 9.60619 10.35717 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021129 B = 0.002347 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.848339 B =11927.107347 C =12502.560099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.163 4.163 3 C -0.162 4.162 4 C -0.092 4.092 5 C 0.152 3.848 6 H 0.104 0.896 7 C 0.062 3.938 8 O -0.567 6.567 9 N -0.690 5.690 10 C 0.516 3.484 11 O -0.533 6.533 12 C 0.483 3.517 13 O -0.521 6.521 14 N -0.584 5.584 15 C -0.069 4.069 16 C -0.027 4.027 17 N -0.260 5.260 18 N -0.139 5.139 19 C -0.321 4.321 20 H 0.118 0.882 21 C 0.046 3.954 22 N -0.767 5.767 23 Si 0.936 3.064 24 H -0.262 1.262 25 H -0.273 1.273 26 H -0.273 1.273 27 C -0.078 4.078 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.379 0.621 38 H 0.416 0.584 39 H 0.409 0.591 40 H 0.178 0.822 41 H 0.275 0.725 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.648 -20.922 1.148 21.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.181 4.181 3 C -0.180 4.180 4 C -0.130 4.130 5 C 0.047 3.953 6 H 0.122 0.878 7 C -0.017 4.017 8 O -0.373 6.373 9 N -0.343 5.343 10 C 0.298 3.702 11 O -0.410 6.410 12 C 0.264 3.736 13 O -0.399 6.399 14 N -0.227 5.227 15 C -0.175 4.175 16 C -0.203 4.203 17 N -0.091 5.091 18 N 0.094 4.906 19 C -0.454 4.454 20 H 0.136 0.864 21 C -0.172 4.172 22 N -0.394 5.394 23 Si 0.760 3.240 24 H -0.186 1.186 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.229 4.229 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.124 0.876 32 H 0.130 0.870 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.226 0.774 38 H 0.253 0.747 39 H 0.244 0.756 40 H 0.194 0.806 41 H 0.086 0.914 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.615 -19.584 2.007 20.016 hybrid contribution 0.755 -0.258 -1.068 1.333 sum 4.370 -19.843 0.939 20.340 Atomic orbital electron populations 1.20854 0.93175 1.02145 1.02193 1.22842 0.96239 0.97748 1.01248 1.22848 0.95475 0.98627 1.01024 1.20882 0.92924 1.00397 0.98758 1.21137 0.92536 0.81217 1.00366 0.87811 1.22650 0.93817 0.98948 0.86311 1.86474 1.25448 1.91070 1.34260 1.45695 1.68170 1.10089 1.10397 1.20317 0.77738 0.87337 0.84849 1.90718 1.49771 1.76357 1.24161 1.19653 0.82195 0.86298 0.85453 1.90661 1.50045 1.75214 1.23932 1.42145 1.62945 1.08467 1.09129 1.17256 1.21744 0.83650 0.94802 1.24153 1.06039 0.92314 0.97755 1.78258 1.25369 1.14402 0.91083 1.44570 1.35913 1.05886 1.04191 1.19968 1.48202 0.84578 0.92626 0.86402 1.25670 0.95642 1.00279 0.95574 1.70214 1.33770 1.29990 1.05398 0.85741 0.78608 0.80056 0.79623 1.18627 1.19863 1.19873 1.21307 1.16928 0.87660 0.97031 0.91632 0.92232 0.91675 0.87562 0.87040 0.89243 0.90036 0.92620 0.92729 0.77370 0.74722 0.75643 0.80551 0.91408 0.83364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.97 10.17 36.00 0.37 -0.60 16 2 C -0.16 -1.33 9.87 -36.03 -0.36 -1.68 16 3 C -0.16 -1.45 8.89 -36.02 -0.32 -1.77 16 4 C -0.09 -0.75 4.92 -27.88 -0.14 -0.89 16 5 C 0.15 1.48 2.36 -67.93 -0.16 1.32 16 6 H 0.10 1.07 7.58 -51.93 -0.39 0.67 16 7 C 0.06 0.53 6.85 37.16 0.25 0.79 16 8 O -0.57 -4.93 12.83 -35.23 -0.45 -5.38 16 9 N -0.69 -8.47 4.71 -54.28 -0.26 -8.72 16 10 C 0.52 7.86 7.85 -11.66 -0.09 7.77 16 11 O -0.53 -8.65 16.14 5.48 0.09 -8.56 16 12 C 0.48 8.87 7.85 -11.66 -0.09 8.78 16 13 O -0.52 -10.72 13.62 5.45 0.07 -10.65 16 14 N -0.58 -11.14 5.45 -10.46 -0.06 -11.19 16 15 C -0.07 -1.60 6.90 -83.92 -0.58 -2.18 16 16 C -0.03 -0.70 10.85 -17.02 -0.18 -0.89 16 17 N -0.26 -7.51 10.39 30.81 0.32 -7.19 16 18 N -0.14 -3.79 3.73 -11.40 -0.04 -3.83 16 19 C -0.32 -8.43 10.25 -14.82 -0.15 -8.59 16 20 H 0.12 2.76 7.83 -52.49 -0.41 2.35 16 21 C 0.05 1.17 5.50 -17.50 -0.10 1.08 16 22 N -0.77 -21.23 11.81 55.50 0.66 -20.58 16 23 Si 0.94 18.75 29.55 -169.99 -5.02 13.73 16 24 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 25 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 26 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 27 C -0.08 -1.84 11.50 -16.38 -0.19 -2.03 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.11 0.73 7.84 -52.49 -0.41 0.32 16 32 H 0.11 1.14 8.02 -52.49 -0.42 0.71 16 33 H 0.09 0.78 7.73 -51.93 -0.40 0.38 16 34 H 0.08 0.54 7.79 -51.93 -0.40 0.13 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.38 1.79 9.12 45.56 0.42 2.21 16 38 H 0.42 5.08 8.07 -40.82 -0.33 4.76 16 39 H 0.41 6.71 8.29 -40.82 -0.34 6.37 16 40 H 0.18 4.49 5.92 -52.49 -0.31 4.18 16 41 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 42 H 0.15 2.94 8.06 -52.48 -0.42 2.51 16 LS Contribution 368.55 15.07 5.55 5.55 Total: -1.00 -33.45 368.55 -5.55 -39.00 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -4.68 Total: 16.71 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -1.74 Total: 1.11 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: 0.62 Total: -51.52 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.29 Total: -24.59 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.73 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.45 -5.55 -39.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116631478.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.522 kcal (2) G-P(sol) polarization free energy of solvation -33.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds