Wall clock time and date at job start Tue Mar 31 2020 04:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.30998 * 120.00385 * 2 1 4 4 C 1.50699 * 119.99627 * 359.97438 * 3 2 1 5 5 C 1.53003 * 109.46998 * 125.00564 * 4 3 2 6 6 H 1.08997 * 109.46998 * 54.99530 * 5 4 3 7 7 C 1.52996 * 109.47635 * 175.00186 * 5 4 3 8 8 O 1.42896 * 109.46876 * 54.99594 * 7 5 4 9 9 N 1.46505 * 109.47050 * 295.00088 * 5 4 3 10 10 C 1.34778 * 120.00007 * 154.99707 * 9 5 4 11 11 O 1.21366 * 120.00035 * 0.02562 * 10 9 5 12 12 C 1.49309 * 119.99924 * 180.02562 * 10 9 5 13 13 O 1.21407 * 119.99668 * 359.97438 * 12 10 9 14 14 N 1.34770 * 120.00138 * 180.02562 * 12 10 9 15 15 C 1.40296 * 120.00306 * 179.97438 * 14 12 10 16 16 C 1.40718 * 126.09771 * 359.96814 * 15 14 12 17 17 N 1.30874 * 108.37509 * 179.74082 * 16 15 14 18 18 N 1.40061 * 108.43445 * 0.44356 * 17 16 15 19 19 C 1.37294 * 126.05340 * 179.81771 * 18 17 16 20 20 H 1.07999 * 120.00339 * 173.75960 * 19 18 17 21 21 C 1.39009 * 120.00129 * 354.03394 * 19 18 17 22 22 N 1.31274 * 120.00094 * 5.58773 * 21 19 18 23 23 Si 1.86802 * 120.00082 * 185.58331 * 21 19 18 24 24 H 1.48497 * 109.47065 * 94.97773 * 23 21 19 25 25 H 1.48495 * 109.47224 * 214.98268 * 23 21 19 26 26 H 1.48506 * 109.47153 * 334.98084 * 23 21 19 27 27 C 1.35787 * 126.09925 * 179.97438 * 15 14 12 28 28 H 1.09003 * 109.47043 * 300.00418 * 1 2 3 29 29 H 1.09004 * 109.46754 * 60.00313 * 1 2 3 30 30 H 1.09001 * 109.47440 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.99906 * 179.97438 * 2 1 3 32 32 H 1.07998 * 120.00172 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47391 * 5.00878 * 4 3 2 34 34 H 1.08996 * 109.47362 * 245.00293 * 4 3 2 35 35 H 1.08993 * 109.47452 * 175.00286 * 7 5 4 36 36 H 1.09007 * 109.46612 * 295.00434 * 7 5 4 37 37 H 0.96704 * 113.99956 * 180.02562 * 8 7 5 38 38 H 0.96997 * 120.00020 * 335.00214 * 9 5 4 39 39 H 0.97005 * 120.00018 * 359.97438 * 14 12 10 40 40 H 1.07996 * 125.81429 * 0.02869 * 16 15 14 41 41 H 0.96998 * 120.00239 * 179.97438 * 22 21 19 42 42 H 1.07992 * 126.25470 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1621 1.1344 0.0000 4 6 1.4086 2.4395 -0.0006 5 6 1.8698 3.2952 1.1810 6 1 2.9520 3.4181 1.1400 7 6 1.1975 4.6677 1.1100 8 8 -0.2202 4.5010 1.0463 9 7 1.5005 2.6350 2.4356 10 6 2.1958 2.8904 3.5616 11 8 3.1276 3.6676 3.5363 12 6 1.8198 2.2171 4.8401 13 8 0.8874 1.4399 4.8654 14 7 2.5147 2.4728 5.9661 15 6 2.1611 1.8406 7.1676 16 6 1.1093 0.9224 7.3430 17 7 1.0939 0.5472 8.5967 18 7 2.1236 1.2149 9.2715 19 6 2.4297 1.0910 10.6041 20 1 3.3084 1.5754 11.0037 21 6 1.6118 0.3373 11.4380 22 7 0.6103 -0.3449 10.9332 23 14 1.9379 0.2951 13.2768 24 1 1.0917 1.3110 13.9530 25 1 1.6115 -1.0531 13.8067 26 1 3.3699 0.5941 13.5326 27 6 2.7727 2.0056 8.3686 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 2.0470 -0.9354 0.0004 32 1 3.2420 1.1344 -0.0004 33 1 0.3403 2.2424 0.0888 34 1 1.6033 2.9711 -0.9320 35 1 1.4560 5.2453 1.9974 36 1 1.5416 5.1952 0.2202 37 1 -0.7123 5.3321 0.9988 38 1 0.7556 2.0140 2.4559 39 1 3.2595 3.0941 5.9459 40 1 0.4330 0.5815 6.5730 41 1 0.0398 -0.8711 11.5150 42 1 3.6183 2.6457 8.5721 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116631479.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:35 Heat of formation + Delta-G solvation = -20.042213 kcal Electronic energy + Delta-G solvation = -26610.109514 eV Core-core repulsion = 22592.898393 eV Total energy + Delta-G solvation = -4017.211122 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.56662 -39.61152 -38.36380 -37.42734 -36.21302 -34.71566 -33.96006 -33.13607 -30.89666 -30.30398 -28.10685 -27.83490 -25.58991 -25.44115 -24.07206 -21.48027 -20.90982 -20.32496 -19.46441 -18.85987 -18.00050 -17.71910 -17.38639 -16.62119 -15.88495 -15.59828 -15.50038 -15.16891 -15.08120 -14.61261 -14.36040 -13.97687 -13.65858 -13.65064 -13.52505 -13.12600 -13.00566 -12.94113 -12.62514 -12.28106 -11.88536 -11.73878 -11.56374 -11.35893 -11.30272 -11.16736 -10.90090 -10.82687 -10.54404 -10.29671 -10.26233 -9.30532 -9.22458 -9.16719 -9.03977 -8.85912 -8.11504 -6.76440 -6.60058 -4.26944 1.68696 2.04376 2.62420 2.93841 3.04339 3.09460 3.34626 3.72941 3.76588 3.97756 4.02296 4.38577 4.44540 4.62242 4.70737 4.88665 4.97948 5.01080 5.04123 5.06469 5.15699 5.23768 5.43163 5.47578 5.52229 5.62885 5.83746 5.98044 6.21080 6.26216 6.37827 6.48699 6.66192 6.77756 6.90406 6.94672 7.17353 7.28074 7.34374 7.78636 7.88650 8.12919 8.19976 8.51060 8.71148 9.32587 9.61059 10.36016 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023176 B = 0.002464 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.874516 B =11361.770210 C =11898.413306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.154 4.154 3 C -0.168 4.168 4 C -0.100 4.100 5 C 0.152 3.848 6 H 0.103 0.897 7 C 0.062 3.938 8 O -0.567 6.567 9 N -0.687 5.687 10 C 0.516 3.484 11 O -0.535 6.535 12 C 0.483 3.517 13 O -0.521 6.521 14 N -0.585 5.585 15 C -0.069 4.069 16 C -0.026 4.026 17 N -0.261 5.261 18 N -0.139 5.139 19 C -0.323 4.323 20 H 0.118 0.882 21 C 0.047 3.953 22 N -0.767 5.767 23 Si 0.936 3.064 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.263 1.263 27 C -0.077 4.077 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.379 0.621 38 H 0.415 0.585 39 H 0.409 0.591 40 H 0.178 0.822 41 H 0.276 0.724 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.495 7.143 -19.704 21.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.172 4.172 3 C -0.186 4.186 4 C -0.137 4.137 5 C 0.047 3.953 6 H 0.121 0.879 7 C -0.017 4.017 8 O -0.373 6.373 9 N -0.341 5.341 10 C 0.298 3.702 11 O -0.412 6.412 12 C 0.264 3.736 13 O -0.398 6.398 14 N -0.227 5.227 15 C -0.174 4.174 16 C -0.202 4.202 17 N -0.092 5.092 18 N 0.094 4.906 19 C -0.455 4.455 20 H 0.135 0.865 21 C -0.171 4.171 22 N -0.393 5.393 23 Si 0.759 3.241 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.187 1.187 27 C -0.228 4.228 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.226 0.774 38 H 0.252 0.748 39 H 0.243 0.757 40 H 0.194 0.806 41 H 0.086 0.914 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.902 5.614 -18.739 19.583 hybrid contribution 0.663 1.196 0.150 1.376 sum 1.565 6.810 -18.590 19.859 Atomic orbital electron populations 1.20907 0.93214 1.02374 1.02034 1.22848 0.96402 0.97889 1.00043 1.22750 0.99535 0.94097 1.02268 1.20976 1.01569 0.94086 0.97065 1.21114 1.00064 0.90757 0.83326 0.87882 1.22654 0.81628 0.96915 1.00520 1.86475 1.17709 1.35610 1.97460 1.45666 1.34850 1.46212 1.07335 1.20311 0.82502 0.82073 0.85357 1.90714 1.28859 1.35623 1.85956 1.19661 0.84737 0.84693 0.84488 1.90658 1.28704 1.35498 1.84945 1.42145 1.31985 1.42409 1.06200 1.17259 1.05585 1.09601 0.84997 1.24143 1.00027 1.00273 0.95776 1.78252 1.08834 1.18739 1.03344 1.44561 1.17320 1.22398 1.06318 1.19924 1.12096 1.33857 0.79625 0.86451 1.25665 0.95086 0.94969 1.01364 1.70210 1.12486 1.20492 1.36155 0.85793 0.79455 0.78371 0.80438 1.19591 1.20066 1.18730 1.21305 1.05021 1.07092 0.89422 0.91226 0.91706 0.92142 0.87383 0.87383 0.89158 0.89589 0.92762 0.92603 0.77400 0.74848 0.75656 0.80564 0.91376 0.83365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.09 8.65 36.00 0.31 -0.78 16 2 C -0.15 -1.40 10.26 -36.03 -0.37 -1.77 16 3 C -0.17 -1.50 9.25 -36.03 -0.33 -1.83 16 4 C -0.10 -0.81 4.72 -27.88 -0.13 -0.94 16 5 C 0.15 1.48 2.36 -67.93 -0.16 1.32 16 6 H 0.10 1.03 7.58 -51.93 -0.39 0.64 16 7 C 0.06 0.53 6.85 37.16 0.25 0.78 16 8 O -0.57 -4.89 12.83 -35.23 -0.45 -5.35 16 9 N -0.69 -8.61 4.73 -54.28 -0.26 -8.87 16 10 C 0.52 7.97 7.85 -11.65 -0.09 7.87 16 11 O -0.53 -8.71 16.14 5.48 0.09 -8.62 16 12 C 0.48 8.97 7.85 -11.65 -0.09 8.88 16 13 O -0.52 -10.81 13.62 5.45 0.07 -10.74 16 14 N -0.58 -11.23 5.45 -10.46 -0.06 -11.28 16 15 C -0.07 -1.60 6.90 -83.92 -0.58 -2.18 16 16 C -0.03 -0.69 10.84 -17.02 -0.18 -0.88 16 17 N -0.26 -7.55 10.41 30.81 0.32 -7.23 16 18 N -0.14 -3.81 3.73 -11.40 -0.04 -3.85 16 19 C -0.32 -8.49 10.24 -14.82 -0.15 -8.64 16 20 H 0.12 2.76 7.84 -52.49 -0.41 2.35 16 21 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 22 N -0.77 -21.25 11.83 55.50 0.66 -20.59 16 23 Si 0.94 18.79 29.56 -169.99 -5.02 13.76 16 24 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 25 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 26 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 27 C -0.08 -1.83 11.50 -16.38 -0.19 -2.01 16 28 H 0.07 0.64 7.66 -51.93 -0.40 0.24 16 29 H 0.06 0.48 7.85 -51.93 -0.41 0.07 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.11 0.94 8.06 -52.48 -0.42 0.52 16 32 H 0.11 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.09 0.79 5.38 -51.93 -0.28 0.51 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.38 1.77 9.12 45.56 0.42 2.18 16 38 H 0.41 5.28 8.07 -40.82 -0.33 4.95 16 39 H 0.41 6.76 8.29 -40.82 -0.34 6.42 16 40 H 0.18 4.50 5.92 -52.49 -0.31 4.19 16 41 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.15 2.95 8.06 -52.49 -0.42 2.52 16 LS Contribution 365.13 15.07 5.50 5.50 Total: -1.00 -33.51 365.13 -5.55 -39.06 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -4.55 Total: 17.29 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -1.81 Total: 0.92 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: 0.62 Total: -51.82 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.29 Total: -24.71 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.02 Total: 13.76 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.51 -5.55 -39.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116631479.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.015 kcal (2) G-P(sol) polarization free energy of solvation -33.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds