Wall clock time and date at job start Tue Mar 31 2020 04:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37999 * 120.81928 * 2 1 4 4 C 1.39125 * 119.26341 * 180.27789 * 3 2 1 5 5 O 1.35502 * 119.52649 * 179.70631 * 4 3 2 6 6 N 1.32438 * 120.94914 * 359.43531 * 4 3 2 7 7 C 1.31634 * 121.80059 * 0.27173 * 6 4 3 8 8 C 1.39568 * 120.62462 * 0.02562 * 7 6 4 9 9 C 1.47617 * 120.49705 * 180.02562 * 8 7 6 10 10 O 1.21582 * 120.00078 * 173.90575 * 9 8 7 11 11 N 1.34769 * 120.00094 * 353.89872 * 9 8 7 12 12 C 1.46506 * 120.00008 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47025 * 180.02562 * 12 11 9 14 14 N 1.46900 * 109.46967 * 179.97438 * 13 12 11 15 15 C 1.46895 * 111.00359 * 179.97438 * 14 13 12 16 16 C 1.50692 * 109.47538 * 179.97438 * 15 14 13 17 17 O 1.21294 * 120.00180 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00412 * 180.02562 * 16 15 14 19 19 C 1.37088 * 120.00362 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00254 * 359.97438 * 19 18 16 21 21 C 1.38958 * 120.00059 * 179.97438 * 19 18 16 22 22 N 1.31404 * 120.00131 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99868 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46605 * 90.00145 * 23 21 19 25 25 H 1.48497 * 109.46980 * 209.99756 * 23 21 19 26 26 H 1.48502 * 109.47291 * 330.00289 * 23 21 19 27 27 H 1.08999 * 109.47308 * 263.92319 * 1 2 3 28 28 H 1.09004 * 109.47104 * 23.92512 * 1 2 3 29 29 H 1.09000 * 109.47163 * 143.92017 * 1 2 3 30 30 H 1.08000 * 120.37055 * 359.97438 * 3 2 1 31 31 H 0.96702 * 113.99828 * 269.73230 * 5 4 3 32 32 H 1.08001 * 119.68838 * 180.02562 * 7 6 4 33 33 H 0.96998 * 120.00393 * 0.02562 * 11 9 8 34 34 H 1.09002 * 109.47025 * 300.00179 * 12 11 9 35 35 H 1.08996 * 109.47371 * 60.00438 * 12 11 9 36 36 H 1.09002 * 109.46994 * 299.99743 * 13 12 11 37 37 H 1.08996 * 109.47060 * 59.99793 * 13 12 11 38 38 H 1.00904 * 111.00432 * 56.04008 * 14 13 12 39 39 H 1.09000 * 109.47227 * 300.00463 * 15 14 13 40 40 H 1.09009 * 109.47119 * 59.99764 * 15 14 13 41 41 H 0.97006 * 119.99420 * 0.02562 * 18 16 15 42 42 H 0.96998 * 120.00622 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6047 1.1474 -0.0059 5 8 4.3042 2.3078 -0.0120 6 7 4.2548 -0.0065 -0.0003 7 6 3.6205 -1.1600 0.0057 8 6 2.2255 -1.2043 0.0058 9 6 1.5172 -2.4994 0.0132 10 8 0.3069 -2.5297 0.1250 11 7 2.2120 -3.6482 -0.1043 12 6 1.5089 -4.9335 -0.0976 13 6 2.5227 -6.0701 -0.2436 14 7 1.8177 -7.3589 -0.2362 15 6 2.7614 -8.4760 -0.3754 16 6 2.0035 -9.7784 -0.3631 17 8 0.7958 -9.7763 -0.2500 18 7 2.6675 -10.9457 -0.4777 19 6 1.9779 -12.1305 -0.4671 20 1 0.9026 -12.1286 -0.3664 21 6 2.6625 -13.3339 -0.5858 22 7 2.0015 -14.4695 -0.5761 23 14 4.5223 -13.3371 -0.7607 24 1 5.1459 -13.4010 0.5856 25 1 4.9425 -14.5178 -1.5573 26 1 4.9570 -12.0952 -1.4491 27 1 -0.3634 -0.1088 1.0219 28 1 -0.3633 0.9394 -0.4168 29 1 -0.3633 -0.8306 -0.6052 30 1 1.6935 2.1314 -0.0004 31 1 4.5070 2.6402 -0.8971 32 1 4.1849 -2.0807 0.0106 33 1 3.1776 -3.6241 -0.1932 34 1 0.9688 -5.0473 0.8424 35 1 0.8038 -4.9662 -0.9281 36 1 3.0631 -5.9565 -1.1833 37 1 3.2275 -6.0372 0.5872 38 1 1.1126 -7.3896 -0.9574 39 1 3.3029 -8.3791 -1.3164 40 1 3.4686 -8.4597 0.4540 41 1 3.6333 -10.9474 -0.5678 42 1 2.4794 -15.3096 -0.6586 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133654908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:31:41 Heat of formation + Delta-G solvation = -100.093655 kcal Electronic energy + Delta-G solvation = -25214.739597 eV Core-core repulsion = 21194.057184 eV Total energy + Delta-G solvation = -4020.682413 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.97716 -40.45711 -40.24745 -38.11242 -37.49642 -36.07549 -35.50028 -34.68809 -33.74046 -32.14397 -30.34130 -28.96915 -27.66894 -25.71559 -25.03372 -23.54438 -22.85447 -21.93862 -21.28104 -20.28814 -19.48499 -18.99504 -18.22559 -17.69733 -17.27398 -16.95163 -16.80697 -16.73347 -16.35031 -15.98733 -15.58022 -15.43857 -15.08731 -14.91275 -14.65310 -14.46160 -14.19780 -14.00612 -13.87403 -13.78456 -13.60735 -13.38637 -13.30087 -12.95523 -12.72047 -12.56655 -12.39674 -12.37722 -11.96476 -11.50167 -11.13556 -10.72781 -10.50035 -10.44165 -10.25223 -10.24012 -9.98995 -9.36000 -8.40240 -6.01581 -0.56789 0.05403 1.31399 1.37749 1.46477 1.67215 1.90697 1.97344 2.24663 2.46250 2.67257 2.81829 3.16168 3.40798 3.47544 3.57100 3.65231 3.86138 3.97057 4.13112 4.16076 4.19742 4.42002 4.47211 4.50139 4.59577 4.63282 4.65489 4.73475 4.92451 4.97202 5.01728 5.23349 5.32446 5.45494 5.53437 5.89073 6.02089 6.33140 6.42359 6.51106 6.60604 6.75203 6.89276 7.11387 7.40854 7.98099 8.77464 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.029777 B = 0.001726 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.091856 B =16213.948758 C =17114.044672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.026 3.974 3 C -0.194 4.194 4 C 0.334 3.666 5 O -0.489 6.489 6 N -0.534 5.534 7 C 0.173 3.827 8 C -0.217 4.217 9 C 0.563 3.437 10 O -0.563 6.563 11 N -0.707 5.707 12 C 0.127 3.873 13 C 0.057 3.943 14 N -0.690 5.690 15 C 0.065 3.935 16 C 0.445 3.555 17 O -0.617 6.617 18 N -0.590 5.590 19 C -0.331 4.331 20 H 0.053 0.947 21 C -0.017 4.017 22 N -0.935 5.935 23 Si 0.967 3.033 24 H -0.257 1.257 25 H -0.277 1.277 26 H -0.228 1.228 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.171 0.829 31 H 0.426 0.574 32 H 0.192 0.808 33 H 0.416 0.584 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.346 0.654 39 H 0.084 0.916 40 H 0.120 0.880 41 H 0.391 0.609 42 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.017 34.838 -2.671 36.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.018 3.982 3 C -0.214 4.214 4 C 0.157 3.843 5 O -0.301 6.301 6 N -0.254 5.254 7 C 0.014 3.986 8 C -0.223 4.223 9 C 0.351 3.649 10 O -0.443 6.443 11 N -0.360 5.360 12 C 0.003 3.997 13 C -0.072 4.072 14 N -0.323 5.323 15 C -0.067 4.067 16 C 0.233 3.767 17 O -0.501 6.501 18 N -0.232 5.232 19 C -0.460 4.460 20 H 0.071 0.929 21 C -0.215 4.215 22 N -0.576 5.576 23 Si 0.787 3.213 24 H -0.182 1.182 25 H -0.202 1.202 26 H -0.151 1.151 27 H 0.098 0.902 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.188 0.812 31 H 0.289 0.711 32 H 0.209 0.791 33 H 0.254 0.746 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.116 0.884 38 H 0.165 0.835 39 H 0.101 0.899 40 H 0.137 0.863 41 H 0.227 0.773 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.209 34.595 -1.264 36.092 hybrid contribution 0.253 -0.697 -1.384 1.570 sum 10.461 33.897 -2.649 35.574 Atomic orbital electron populations 1.21071 0.88512 1.04259 1.03851 1.20573 0.98015 0.91064 0.88512 1.22179 0.93403 1.00146 1.05709 1.19590 0.87611 0.85431 0.91673 1.84674 1.75736 1.33464 1.36178 1.67241 1.42606 0.98914 1.16644 1.23097 0.89805 0.96021 0.89722 1.20823 0.95618 0.93806 1.12008 1.18105 0.86595 0.84044 0.76171 1.90775 1.15099 1.87544 1.50846 1.45610 1.11649 1.04880 1.73892 1.21110 0.94993 0.81299 1.02277 1.22098 0.95574 0.86576 1.02949 1.59887 1.15186 1.01296 1.55956 1.21625 0.94182 0.86815 1.04067 1.21083 0.88286 0.86202 0.81104 1.90559 1.16911 1.87838 1.54815 1.42010 1.08921 1.05123 1.67110 1.19011 0.93248 0.83893 1.49869 0.92870 1.26163 1.05685 0.93579 0.96087 1.69808 1.39127 0.98583 1.50073 0.85334 0.76050 0.80089 0.79825 1.18168 1.20189 1.15073 0.90231 0.89224 0.90065 0.81166 0.71079 0.79092 0.74606 0.92058 0.92141 0.92022 0.88445 0.83513 0.89856 0.86256 0.77338 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 8.83 71.24 0.63 -1.11 16 2 C 0.03 0.39 5.95 -19.44 -0.12 0.27 16 3 C -0.19 -2.23 9.70 22.43 0.22 -2.01 16 4 C 0.33 4.51 7.74 84.81 0.66 5.17 16 5 O -0.49 -5.02 13.55 -88.04 -1.19 -6.21 16 6 N -0.53 -8.27 10.37 -307.79 -3.19 -11.46 16 7 C 0.17 2.12 10.69 85.04 0.91 3.03 16 8 C -0.22 -3.33 5.89 -19.99 -0.12 -3.45 16 9 C 0.56 10.64 7.71 86.72 0.67 11.31 16 10 O -0.56 -14.83 13.50 -3.97 -0.05 -14.89 16 11 N -0.71 -9.74 5.51 -466.18 -2.57 -12.31 16 12 C 0.13 2.33 5.93 86.38 0.51 2.84 16 13 C 0.06 0.91 5.80 86.30 0.50 1.41 16 14 N -0.69 -18.24 6.13 -517.94 -3.17 -21.41 16 15 C 0.07 1.78 6.17 85.56 0.53 2.31 16 16 C 0.45 19.48 7.82 87.65 0.69 20.16 16 17 O -0.62 -33.93 15.78 -3.07 -0.05 -33.98 16 18 N -0.59 -27.09 5.09 -306.99 -1.56 -28.66 16 19 C -0.33 -19.27 10.16 84.04 0.85 -18.42 16 20 H 0.05 3.72 7.39 -2.91 -0.02 3.69 16 21 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 22 N -0.94 -56.26 13.96 21.66 0.30 -55.96 16 23 Si 0.97 37.91 27.74 68.60 1.90 39.81 16 24 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 25 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 26 H -0.23 -7.31 6.52 99.48 0.65 -6.66 16 27 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.09 0.80 8.06 -2.39 -0.02 0.78 16 29 H 0.08 1.56 5.96 -2.39 -0.01 1.54 16 30 H 0.17 1.08 8.06 -2.91 -0.02 1.05 16 31 H 0.43 -0.10 9.06 -74.06 -0.67 -0.77 16 32 H 0.19 0.98 6.46 -2.91 -0.02 0.96 16 33 H 0.42 2.70 6.56 -92.71 -0.61 2.09 16 34 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.35 10.06 8.43 -89.69 -0.76 9.31 16 39 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.12 2.62 8.14 -2.38 -0.02 2.60 16 41 H 0.39 14.54 5.76 -92.70 -0.53 14.01 16 42 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -87.67 361.29 -4.70 -92.37 By element: Atomic # 1 Polarization: 33.15 SS G_CDS: -1.51 Total: 31.64 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: 6.40 Total: 21.05 kcal Atomic # 7 Polarization: -119.61 SS G_CDS: -10.19 Total: -129.80 kcal Atomic # 8 Polarization: -53.78 SS G_CDS: -1.29 Total: -55.07 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 1.90 Total: 39.81 kcal Total: -87.67 -4.70 -92.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133654908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.725 kcal (2) G-P(sol) polarization free energy of solvation -87.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds