Wall clock time and date at job start Tue Mar 31 2020 05:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.46494 * 120.00080 * 275.00347 * 3 2 1 5 5 C 1.50697 * 109.47607 * 84.99862 * 4 3 2 6 6 H 1.08003 * 119.99367 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00325 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99491 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00078 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47122 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46939 * 120.00065 * 9 7 5 12 12 H 1.48501 * 109.47170 * 239.99605 * 9 7 5 13 13 S 1.65596 * 119.99655 * 94.99926 * 3 2 1 14 14 O 1.42103 * 106.40201 * 203.53703 * 13 3 2 15 15 O 1.42095 * 106.40562 * 336.46073 * 13 3 2 16 16 N 1.65601 * 107.21751 * 90.00120 * 13 3 2 17 17 C 1.47150 * 120.98259 * 89.99822 * 16 13 3 18 18 C 1.53300 * 108.38460 * 129.44098 * 17 16 13 19 19 H 1.09007 * 109.50703 * 172.22451 * 18 17 16 20 20 C 1.52998 * 109.51352 * 292.37673 * 18 17 16 21 21 O 1.42964 * 109.22308 * 52.30573 * 18 17 16 22 22 C 1.42966 * 114.16066 * 297.41624 * 21 18 17 23 23 H 1.08996 * 109.51290 * 302.60269 * 22 21 18 24 24 C 1.52998 * 109.50919 * 182.50369 * 22 21 18 25 25 O 1.42908 * 109.46946 * 65.00048 * 24 22 21 26 26 C 1.47149 * 120.98403 * 269.71605 * 16 13 3 27 27 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 29 29 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 30 30 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 31 31 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 32 32 H 1.08998 * 109.46996 * 205.00499 * 4 3 2 33 33 H 1.09004 * 109.47165 * 324.99422 * 4 3 2 34 34 H 0.97007 * 119.99732 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.68407 * 249.16531 * 17 16 13 36 36 H 1.08996 * 109.68311 * 9.71805 * 17 16 13 37 37 H 1.09005 * 109.46889 * 60.00300 * 20 18 17 38 38 H 1.08998 * 109.47200 * 179.97438 * 20 18 17 39 39 H 1.08999 * 109.47165 * 299.99892 * 20 18 17 40 40 H 1.08995 * 109.47186 * 184.99828 * 24 22 21 41 41 H 1.09001 * 109.47524 * 305.00437 * 24 22 21 42 42 H 0.96701 * 113.99693 * 179.97438 * 25 24 22 43 43 H 1.09011 * 109.67948 * 350.27791 * 26 16 13 44 44 H 1.08999 * 109.68482 * 110.83015 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2638 5 6 0.8360 2.7289 -1.6356 6 1 -0.0225 2.5949 -0.9942 7 6 0.7224 3.4673 -2.7943 8 7 1.7681 3.6309 -3.5750 9 14 -0.9167 4.2355 -3.2554 10 1 -1.9270 3.9061 -2.2180 11 1 -0.7642 5.7098 -3.3467 12 1 -1.3618 3.7018 -4.5678 13 16 2.4122 2.1201 1.4287 14 8 2.3058 3.5186 1.1999 15 8 1.6868 1.4415 2.4448 16 7 4.0144 1.8136 1.7137 17 6 5.0596 2.7218 1.2158 18 6 5.9948 3.0674 2.3803 19 1 6.8523 3.6260 2.0051 20 6 5.2408 3.9151 3.4069 21 8 6.4450 1.8588 2.9972 22 6 5.4004 1.0731 3.5762 23 1 4.8618 1.6694 4.3126 24 6 6.0039 -0.1569 4.2573 25 8 6.8176 0.2584 5.3563 26 6 4.4346 0.6283 2.4777 27 1 -0.3635 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.9080 2.8918 -1.1512 33 1 2.4690 1.4183 -2.0480 34 1 1.6882 4.1507 -4.3901 35 1 5.6255 2.2312 0.4238 36 1 4.6015 3.6325 0.8302 37 1 4.3849 3.3544 3.7828 38 1 5.9061 4.1601 4.2348 39 1 4.8941 4.8343 2.9348 40 1 5.2029 -0.8004 4.6211 41 1 6.6143 -0.7063 3.5406 42 1 7.2329 -0.4714 5.8359 43 1 3.5626 0.1533 2.9275 44 1 4.9364 -0.0768 1.8150 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337191663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:48 Heat of formation + Delta-G solvation = -163.381755 kcal Electronic energy + Delta-G solvation = -27799.212233 eV Core-core repulsion = 23878.936643 eV Total energy + Delta-G solvation = -3920.275590 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.84127 -36.91725 -36.72339 -36.08346 -35.23791 -34.66499 -32.79769 -32.61964 -29.87418 -29.59721 -26.81961 -26.65098 -24.85893 -22.88501 -22.65874 -21.88383 -19.99225 -18.65867 -17.62785 -17.41752 -16.95509 -16.73186 -16.44138 -15.81832 -15.44098 -15.00001 -14.63243 -14.59789 -14.27727 -14.03205 -13.72829 -13.33135 -13.12640 -13.00542 -12.64734 -12.29514 -12.25372 -11.98219 -11.94456 -11.75174 -11.52163 -11.41927 -11.34705 -11.27834 -11.20089 -11.03351 -10.98148 -10.53443 -10.48239 -10.39315 -10.20783 -10.07357 -9.91317 -9.63984 -8.74354 -8.45625 -8.11138 -6.08414 -4.11509 1.07164 3.29130 3.32353 3.37218 3.42389 3.58724 3.88541 4.02792 4.42821 4.71892 4.75101 4.81543 4.91665 5.02138 5.06945 5.18931 5.23849 5.26099 5.28610 5.34462 5.40778 5.49524 5.68011 5.77360 5.81411 5.85254 5.90661 5.93826 6.09892 6.18844 6.20791 6.37271 6.53789 6.70634 6.95322 7.14416 7.19459 7.37667 7.40726 7.59203 7.89470 8.18691 8.90806 9.53445 11.00304 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.021375 B = 0.004229 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.597446 B = 6619.979499 C = 7216.066266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.135 3.865 3 N -0.991 5.991 4 C 0.258 3.742 5 C -0.525 4.525 6 H 0.063 0.937 7 C 0.062 3.938 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.284 1.284 13 S 2.777 3.223 14 O -0.958 6.958 15 O -0.993 6.993 16 N -1.011 6.011 17 C 0.089 3.911 18 C 0.079 3.921 19 H 0.114 0.886 20 C -0.186 4.186 21 O -0.363 6.363 22 C 0.076 3.924 23 H 0.074 0.926 24 C 0.086 3.914 25 O -0.565 6.565 26 C 0.094 3.906 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.263 0.737 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.378 0.622 43 H 0.100 0.900 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.393 -8.698 12.394 17.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.009 3.991 3 N -0.834 5.834 4 C 0.136 3.864 5 C -0.564 4.564 6 H 0.081 0.919 7 C -0.140 4.140 8 N -0.535 5.535 9 Si 0.722 3.278 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.210 1.210 13 S 2.787 3.213 14 O -0.942 6.942 15 O -0.977 6.977 16 N -0.849 5.849 17 C -0.037 4.037 18 C 0.020 3.980 19 H 0.132 0.868 20 C -0.243 4.243 21 O -0.281 6.281 22 C 0.017 3.983 23 H 0.092 0.908 24 C 0.008 3.992 25 O -0.370 6.370 26 C -0.033 4.033 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.125 0.875 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.225 0.775 43 H 0.118 0.882 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.857 -7.559 12.555 17.123 hybrid contribution -0.762 -0.236 -0.570 0.981 sum 8.095 -7.795 11.985 16.429 Atomic orbital electron populations 1.22259 0.96283 1.00885 1.03711 1.20953 0.94889 0.82274 1.00979 1.57827 1.78073 1.23047 1.24409 1.19053 0.97538 0.90884 0.78918 1.21551 0.96319 1.31810 1.06746 0.91889 1.24925 0.96851 0.96009 0.96225 1.69927 1.29215 1.40680 1.13661 0.86496 0.83852 0.79217 0.78218 1.19646 1.20829 1.20987 1.02164 0.72315 0.73782 0.73060 1.93618 1.84884 1.30041 1.85616 1.93519 1.69883 1.76501 1.57809 1.58549 1.25292 1.33608 1.67499 1.22152 0.90291 0.94777 0.96442 1.22537 0.97559 0.85539 0.92384 0.86820 1.22404 1.00997 1.00908 0.99989 1.88019 1.31869 1.33802 1.74439 1.22296 0.89287 0.92689 0.94046 0.90834 1.22103 0.94139 0.94566 0.88441 1.86546 1.67263 1.37287 1.45887 1.21798 0.99659 0.87978 0.93831 0.93018 0.92871 0.90223 0.91040 0.92385 0.94656 0.94745 0.92777 0.90532 0.87533 0.92447 0.91622 0.90676 0.91835 0.92497 0.77512 0.88198 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.01 9.83 37.16 0.37 -2.65 16 2 C 0.14 2.32 6.09 -4.04 -0.02 2.29 16 3 N -0.99 -20.16 2.86 -115.67 -0.33 -20.49 16 4 C 0.26 6.28 5.12 -5.20 -0.03 6.25 16 5 C -0.52 -14.32 8.41 -34.44 -0.29 -14.61 16 6 H 0.06 1.73 6.89 -52.48 -0.36 1.37 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -25.63 13.29 55.43 0.74 -24.90 16 9 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 S 2.78 54.80 6.07 -107.50 -0.65 54.15 16 14 O -0.96 -22.39 15.73 -57.17 -0.90 -23.29 16 15 O -0.99 -20.17 15.72 -57.17 -0.90 -21.07 16 16 N -1.01 -15.70 2.92 -113.30 -0.33 -16.03 16 17 C 0.09 1.29 6.09 -3.53 -0.02 1.27 16 18 C 0.08 1.01 3.93 -26.58 -0.10 0.91 16 19 H 0.11 1.22 8.14 -51.92 -0.42 0.79 16 20 C -0.19 -2.42 8.81 37.16 0.33 -2.09 16 21 O -0.36 -4.93 10.19 -39.97 -0.41 -5.34 16 22 C 0.08 0.94 2.66 -26.79 -0.07 0.87 16 23 H 0.07 0.99 6.25 -51.93 -0.32 0.66 16 24 C 0.09 0.81 6.71 37.16 0.25 1.06 16 25 O -0.56 -5.70 13.63 -39.97 -0.54 -6.25 16 26 C 0.09 1.18 5.98 -3.75 -0.02 1.16 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.08 1.56 6.59 -51.93 -0.34 1.22 16 30 H 0.07 1.13 8.00 -51.93 -0.42 0.71 16 31 H 0.06 0.84 7.61 -51.93 -0.40 0.45 16 32 H 0.04 0.91 7.61 -51.93 -0.40 0.52 16 33 H 0.03 0.85 8.00 -51.93 -0.42 0.44 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.11 1.68 6.94 -51.93 -0.36 1.32 16 37 H 0.06 0.82 6.11 -51.93 -0.32 0.50 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.38 1.85 9.12 45.56 0.42 2.26 16 43 H 0.10 1.21 6.94 -51.92 -0.36 0.85 16 44 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 LS Contribution 362.00 15.07 5.46 5.46 Total: -1.00 -34.38 362.00 -8.82 -43.20 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.21 Total: 1.90 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 0.28 Total: -3.91 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: 0.07 Total: -61.41 kcal Atomic # 8 Polarization: -53.19 SS G_CDS: -2.75 Total: -55.94 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 54.80 SS G_CDS: -0.65 Total: 54.15 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.38 -8.82 -43.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337191663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.181 kcal (2) G-P(sol) polarization free energy of solvation -34.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds