Wall clock time and date at job start Tue Mar 31 2020 05:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.46494 * 120.00080 * 275.00347 * 3 2 1 5 5 C 1.50697 * 109.47607 * 84.99862 * 4 3 2 6 6 H 1.08003 * 119.99367 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00325 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99491 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00078 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47122 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46939 * 120.00065 * 9 7 5 12 12 H 1.48501 * 109.47170 * 239.99605 * 9 7 5 13 13 S 1.65596 * 119.99655 * 94.99926 * 3 2 1 14 14 O 1.42103 * 106.40201 * 203.53703 * 13 3 2 15 15 O 1.42095 * 106.40562 * 336.46073 * 13 3 2 16 16 N 1.65601 * 107.21751 * 90.00120 * 13 3 2 17 17 C 1.47150 * 120.98259 * 89.99822 * 16 13 3 18 18 C 1.53300 * 108.38460 * 129.44098 * 17 16 13 19 19 H 1.09007 * 109.50703 * 172.22451 * 18 17 16 20 20 C 1.52998 * 109.51352 * 292.37673 * 18 17 16 21 21 O 1.42964 * 109.22308 * 52.30573 * 18 17 16 22 22 C 1.42966 * 114.16066 * 297.41624 * 21 18 17 23 23 H 1.08996 * 109.51290 * 302.60269 * 22 21 18 24 24 C 1.52998 * 109.50919 * 182.50369 * 22 21 18 25 25 O 1.42908 * 109.46946 * 65.00048 * 24 22 21 26 26 C 1.47149 * 120.98403 * 269.71605 * 16 13 3 27 27 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 29 29 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 30 30 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 31 31 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 32 32 H 1.08998 * 109.46996 * 205.00499 * 4 3 2 33 33 H 1.09004 * 109.47165 * 324.99422 * 4 3 2 34 34 H 0.97007 * 119.99732 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.68407 * 249.16531 * 17 16 13 36 36 H 1.08996 * 109.68311 * 9.71805 * 17 16 13 37 37 H 1.09005 * 109.46889 * 60.00300 * 20 18 17 38 38 H 1.08998 * 109.47200 * 179.97438 * 20 18 17 39 39 H 1.08999 * 109.47165 * 299.99892 * 20 18 17 40 40 H 1.08995 * 109.47186 * 184.99828 * 24 22 21 41 41 H 1.09001 * 109.47524 * 305.00437 * 24 22 21 42 42 H 0.96701 * 113.99693 * 179.97438 * 25 24 22 43 43 H 1.09011 * 109.67948 * 350.27791 * 26 16 13 44 44 H 1.08999 * 109.68482 * 110.83015 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2638 5 6 0.8360 2.7289 -1.6356 6 1 -0.0225 2.5949 -0.9942 7 6 0.7224 3.4673 -2.7943 8 7 1.7681 3.6309 -3.5750 9 14 -0.9167 4.2355 -3.2554 10 1 -1.9270 3.9061 -2.2180 11 1 -0.7642 5.7098 -3.3467 12 1 -1.3618 3.7018 -4.5678 13 16 2.4122 2.1201 1.4287 14 8 2.3058 3.5186 1.1999 15 8 1.6868 1.4415 2.4448 16 7 4.0144 1.8136 1.7137 17 6 5.0596 2.7218 1.2158 18 6 5.9948 3.0674 2.3803 19 1 6.8523 3.6260 2.0051 20 6 5.2408 3.9151 3.4069 21 8 6.4450 1.8588 2.9972 22 6 5.4004 1.0731 3.5762 23 1 4.8618 1.6694 4.3126 24 6 6.0039 -0.1569 4.2573 25 8 6.8176 0.2584 5.3563 26 6 4.4346 0.6283 2.4777 27 1 -0.3635 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.9080 2.8918 -1.1512 33 1 2.4690 1.4183 -2.0480 34 1 1.6882 4.1507 -4.3901 35 1 5.6255 2.2312 0.4238 36 1 4.6015 3.6325 0.8302 37 1 4.3849 3.3544 3.7828 38 1 5.9061 4.1601 4.2348 39 1 4.8941 4.8343 2.9348 40 1 5.2029 -0.8004 4.6211 41 1 6.6143 -0.7063 3.5406 42 1 7.2329 -0.4714 5.8359 43 1 3.5626 0.1533 2.9275 44 1 4.9364 -0.0768 1.8150 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337191663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:48 Heat of formation + Delta-G solvation = -191.415450 kcal Electronic energy + Delta-G solvation = -27800.427865 eV Core-core repulsion = 23878.936643 eV Total energy + Delta-G solvation = -3921.491223 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.86405 -38.43377 -37.72392 -37.58735 -36.90173 -35.81582 -34.65242 -33.77552 -31.46283 -30.61907 -28.69801 -27.70869 -25.92374 -24.70447 -23.66008 -23.41473 -21.07573 -19.98550 -18.98683 -18.59593 -18.44803 -18.23731 -17.77751 -17.21772 -16.60934 -16.49459 -15.99039 -15.67174 -15.64122 -15.21875 -14.91678 -14.71534 -14.58441 -14.28940 -14.03663 -13.75419 -13.58907 -13.50789 -13.27480 -13.15993 -13.05605 -13.02323 -12.84074 -12.81030 -12.75132 -12.37582 -12.28051 -12.18359 -12.14915 -11.64983 -11.54507 -11.35838 -11.27072 -10.86702 -10.57968 -9.95589 -9.74778 -8.19230 -6.28738 -0.46035 1.37130 1.40171 1.50861 1.91951 2.38224 2.49021 2.66418 3.10718 3.12861 3.40525 3.60573 3.79510 3.94109 3.96738 4.03176 4.17404 4.24321 4.29316 4.38968 4.45451 4.49245 4.53895 4.58515 4.68858 4.69592 4.73975 4.83393 4.90840 4.94643 5.09235 5.14148 5.16251 5.18721 5.40481 5.46675 5.58105 5.73707 5.96730 6.12977 6.15520 6.78888 6.96973 7.39188 8.88655 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.021375 B = 0.004229 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.597446 B = 6619.979499 C = 7216.066266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.125 3.875 3 N -0.997 5.997 4 C 0.274 3.726 5 C -0.539 4.539 6 H 0.054 0.946 7 C 0.014 3.986 8 N -0.923 5.923 9 Si 0.950 3.050 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.271 1.271 13 S 2.788 3.212 14 O -1.003 7.003 15 O -1.001 7.001 16 N -1.005 6.005 17 C 0.085 3.915 18 C 0.082 3.918 19 H 0.138 0.862 20 C -0.185 4.185 21 O -0.369 6.369 22 C 0.070 3.930 23 H 0.058 0.942 24 C 0.089 3.911 25 O -0.589 6.589 26 C 0.089 3.911 27 H 0.088 0.912 28 H 0.036 0.964 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.015 0.985 33 H 0.028 0.972 34 H 0.266 0.734 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.040 0.960 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.400 0.600 43 H 0.106 0.894 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.049 -10.401 13.050 19.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.001 4.001 3 N -0.838 5.838 4 C 0.150 3.850 5 C -0.578 4.578 6 H 0.072 0.928 7 C -0.186 4.186 8 N -0.563 5.563 9 Si 0.775 3.225 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.196 1.196 13 S 2.799 3.201 14 O -0.986 6.986 15 O -0.985 6.985 16 N -0.846 5.846 17 C -0.040 4.040 18 C 0.023 3.977 19 H 0.155 0.845 20 C -0.243 4.243 21 O -0.287 6.287 22 C 0.011 3.989 23 H 0.076 0.924 24 C 0.010 3.990 25 O -0.398 6.398 26 C -0.037 4.037 27 H 0.107 0.893 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.033 0.967 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.059 0.941 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.089 0.911 42 H 0.250 0.750 43 H 0.125 0.875 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 9.503 -9.301 13.231 18.758 hybrid contribution -0.909 0.237 -0.681 1.160 sum 8.594 -9.064 12.550 17.706 Atomic orbital electron populations 1.22238 0.96716 1.02631 1.01452 1.21281 0.94663 0.80849 1.03262 1.57737 1.78931 1.24168 1.22935 1.18608 0.95607 0.90391 0.80356 1.21853 0.97232 1.32012 1.06696 0.92823 1.25665 0.99954 0.96568 0.96365 1.70006 1.30811 1.41415 1.14107 0.85634 0.80210 0.78305 0.78343 1.19572 1.20701 1.19594 1.01565 0.73127 0.72694 0.72714 1.93555 1.86021 1.32943 1.86131 1.93495 1.70910 1.76342 1.57775 1.58166 1.23867 1.34943 1.67656 1.22287 0.90054 0.94016 0.97684 1.22602 0.97866 0.85701 0.91529 0.84452 1.22408 1.00713 1.00625 1.00531 1.88021 1.32445 1.33908 1.74360 1.22453 0.89213 0.93631 0.93626 0.92441 1.22131 0.95106 0.93094 0.88636 1.86478 1.67673 1.39279 1.46325 1.22097 1.00293 0.87074 0.94201 0.89316 0.94452 0.93036 0.89553 0.89203 0.96672 0.95370 0.92507 0.89161 0.89535 0.94098 0.90367 0.90999 0.89409 0.91079 0.74984 0.87546 0.88166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.81 9.83 71.98 0.71 -5.10 16 2 C 0.12 4.06 6.09 86.38 0.53 4.59 16 3 N -1.00 -40.43 2.86 -519.85 -1.48 -41.91 16 4 C 0.27 13.58 5.12 85.63 0.44 14.02 16 5 C -0.54 -29.94 8.41 25.60 0.22 -29.73 16 6 H 0.05 3.02 6.89 -2.91 -0.02 3.00 16 7 C 0.01 0.78 5.46 84.65 0.46 1.24 16 8 N -0.92 -53.44 13.29 21.45 0.28 -53.15 16 9 Si 0.95 44.51 29.54 68.60 2.03 46.54 16 10 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 13 S 2.79 110.57 6.07 -56.49 -0.34 110.23 16 14 O -1.00 -48.48 15.73 -128.00 -2.01 -50.49 16 15 O -1.00 -40.17 15.72 -128.00 -2.01 -42.18 16 16 N -1.01 -30.46 2.92 -512.36 -1.50 -31.96 16 17 C 0.09 2.42 6.09 86.36 0.53 2.95 16 18 C 0.08 2.01 3.93 30.69 0.12 2.13 16 19 H 0.14 2.70 8.14 -2.38 -0.02 2.68 16 20 C -0.19 -4.78 8.81 71.98 0.63 -4.15 16 21 O -0.37 -9.30 10.19 -144.44 -1.47 -10.77 16 22 C 0.07 1.60 2.66 30.55 0.08 1.68 16 23 H 0.06 1.49 6.25 -2.39 -0.01 1.47 16 24 C 0.09 1.40 6.71 71.98 0.48 1.89 16 25 O -0.59 -10.42 13.63 -144.44 -1.97 -12.39 16 26 C 0.09 2.04 5.98 86.22 0.52 2.55 16 27 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.05 2.02 6.59 -2.39 -0.02 2.00 16 30 H 0.09 2.56 8.00 -2.39 -0.02 2.54 16 31 H 0.09 2.36 7.61 -2.39 -0.02 2.34 16 32 H 0.02 0.81 7.61 -2.39 -0.02 0.80 16 33 H 0.03 1.42 8.00 -2.39 -0.02 1.40 16 34 H 0.27 14.50 8.31 -92.70 -0.77 13.73 16 35 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.09 2.83 6.94 -2.39 -0.02 2.81 16 37 H 0.04 1.17 6.11 -2.38 -0.01 1.16 16 38 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.40 2.83 9.12 -74.06 -0.68 2.16 16 43 H 0.11 2.31 6.94 -2.38 -0.02 2.30 16 44 H 0.10 1.84 8.13 -2.39 -0.02 1.82 16 Total: -1.00 -74.56 362.00 -3.44 -78.00 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.33 Total: 16.02 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 4.71 Total: -7.92 kcal Atomic # 7 Polarization: -124.33 SS G_CDS: -2.70 Total: -127.02 kcal Atomic # 8 Polarization: -108.37 SS G_CDS: -7.47 Total: -115.84 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: 110.57 SS G_CDS: -0.34 Total: 110.23 kcal Total: -74.56 -3.44 -78.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337191663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.414 kcal (2) G-P(sol) polarization free energy of solvation -74.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds