Wall clock time and date at job start Tue Mar 31 2020 05:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.46498 * 119.99594 * 85.00153 * 3 2 1 5 5 C 1.50695 * 109.47417 * 85.00087 * 4 3 2 6 6 H 1.08000 * 119.99673 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00350 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00248 * 179.97438 * 7 5 4 9 9 Si 1.86806 * 119.99768 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46770 * 90.00319 * 9 7 5 11 11 H 1.48499 * 109.46946 * 209.99820 * 9 7 5 12 12 H 1.48492 * 109.47183 * 330.00017 * 9 7 5 13 13 S 1.65591 * 119.99950 * 265.00044 * 3 2 1 14 14 O 1.42104 * 106.40084 * 203.54145 * 13 3 2 15 15 O 1.42103 * 106.40538 * 336.45791 * 13 3 2 16 16 N 1.65597 * 107.22042 * 90.00082 * 13 3 2 17 17 C 1.47024 * 125.65027 * 269.69004 * 16 13 3 18 18 C 1.54316 * 107.27674 * 180.96415 * 17 16 13 19 19 H 1.08994 * 110.92569 * 264.11216 * 18 17 16 20 20 O 1.42898 * 110.58787 * 140.78833 * 18 17 16 21 21 C 1.42901 * 114.00118 * 96.64571 * 20 18 17 22 22 C 1.55155 * 102.86337 * 22.52837 * 18 17 16 23 23 H 1.09002 * 111.00125 * 82.37647 * 22 18 17 24 24 O 1.42898 * 111.00575 * 206.22564 * 22 18 17 25 25 C 1.42895 * 114.00238 * 203.65325 * 24 22 18 26 26 C 1.47424 * 125.64892 * 89.99725 * 16 13 3 27 27 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 29 29 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 30 30 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 31 31 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 32 32 H 1.08999 * 109.46835 * 205.00119 * 4 3 2 33 33 H 1.09001 * 109.47298 * 324.99692 * 4 3 2 34 34 H 0.97007 * 119.99872 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.88044 * 300.51380 * 17 16 13 36 36 H 1.09004 * 109.87623 * 61.67634 * 17 16 13 37 37 H 1.08996 * 109.47009 * 179.97438 * 21 20 18 38 38 H 1.08990 * 109.47361 * 300.00289 * 21 20 18 39 39 H 1.09003 * 109.46844 * 60.00279 * 21 20 18 40 40 H 1.08999 * 109.47478 * 179.97438 * 25 24 22 41 41 H 1.09007 * 109.47082 * 299.99580 * 25 24 22 42 42 H 1.08998 * 109.47191 * 59.99352 * 25 24 22 43 43 H 1.09001 * 110.36984 * 274.67524 * 26 16 13 44 44 H 1.09003 * 110.36956 * 36.88595 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1583 2.1086 1.2639 5 6 3.4947 1.7887 1.8824 6 1 4.1720 1.1110 1.3839 7 6 3.8529 2.3612 3.0844 8 7 5.0191 2.0817 3.6243 9 14 2.6817 3.5340 3.9461 10 1 1.7963 2.7673 4.8590 11 1 3.4616 4.5253 4.7299 12 1 1.8564 4.2415 2.9345 13 16 2.4122 2.1202 -1.4286 14 8 3.3284 3.1570 -1.1048 15 8 2.7096 1.0799 -2.3499 16 7 1.0432 2.8642 -1.9894 17 6 0.0422 2.2586 -2.8798 18 6 -1.0367 3.3280 -3.1511 19 1 -1.8826 3.2081 -2.4742 20 8 -1.4658 3.2747 -4.5131 21 6 -2.6602 2.5170 -4.7170 22 6 -0.2872 4.6556 -2.8632 23 1 0.3019 4.9667 -3.7260 24 8 -1.1987 5.6837 -2.4705 25 6 -0.7148 7.0084 -2.7005 26 6 0.6295 4.2458 -1.6836 27 1 -0.3635 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.0922 3.1802 1.0757 33 1 1.3617 1.8097 1.9453 34 1 5.2709 2.4842 4.4703 35 1 0.5125 1.9578 -3.8160 36 1 -0.4099 1.3933 -2.3949 37 1 -2.9194 2.5254 -5.7757 38 1 -2.4991 1.4899 -4.3901 39 1 -3.4733 2.9585 -4.1407 40 1 -1.4644 7.7304 -2.3766 41 1 0.2055 7.1621 -2.1369 42 1 -0.5165 7.1433 -3.7638 43 1 0.0764 4.2773 -0.7449 44 1 1.4999 4.8999 -1.6323 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337200162.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:28 Heat of formation + Delta-G solvation = -146.569951 kcal Electronic energy + Delta-G solvation = -27525.100514 eV Core-core repulsion = 23605.553938 eV Total energy + Delta-G solvation = -3919.546576 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.75426 -37.48987 -36.77058 -36.29423 -36.18517 -35.28061 -32.61483 -30.34387 -30.03779 -28.71265 -27.17799 -26.79412 -26.40509 -22.96474 -22.48875 -21.55164 -21.46845 -18.70687 -17.71451 -17.66728 -16.95182 -16.79672 -15.96345 -15.88253 -15.72162 -15.32754 -15.24289 -14.60894 -14.44827 -14.12125 -13.91462 -13.63853 -13.39333 -13.04294 -12.81605 -12.57291 -12.47334 -12.18908 -12.09104 -12.02631 -11.93907 -11.66659 -11.54236 -11.50404 -11.45835 -11.14536 -10.99892 -10.79313 -10.58065 -10.35440 -10.19802 -10.18155 -9.68578 -9.57274 -8.99725 -8.60935 -8.17964 -6.09597 -4.09006 0.97782 3.16591 3.19837 3.24401 3.32428 3.33525 3.75266 4.04713 4.15152 4.36709 4.46543 4.75976 4.86990 4.95002 5.02720 5.06027 5.15186 5.18924 5.19875 5.23816 5.28284 5.41507 5.44701 5.50211 5.56331 5.57109 5.61945 5.63095 5.71528 5.87881 6.06325 6.16903 6.28299 6.45928 6.52034 6.71973 6.83025 6.95313 7.06848 7.37711 7.56284 8.47416 8.95161 9.49325 11.03936 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014686 B = 0.004782 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.091937 B = 5853.317458 C = 6673.605960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.115 3.885 3 N -0.983 5.983 4 C 0.228 3.772 5 C -0.531 4.531 6 H 0.078 0.922 7 C 0.074 3.926 8 N -0.894 5.894 9 Si 0.873 3.127 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.265 1.265 13 S 2.793 3.207 14 O -0.954 6.954 15 O -0.984 6.984 16 N -1.018 6.018 17 C 0.102 3.898 18 C 0.085 3.915 19 H 0.090 0.910 20 O -0.375 6.375 21 C 0.030 3.970 22 C 0.081 3.919 23 H 0.089 0.911 24 O -0.375 6.375 25 C 0.029 3.971 26 C 0.098 3.902 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.032 0.968 33 H 0.029 0.971 34 H 0.265 0.735 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.087 0.913 41 H 0.047 0.953 42 H 0.044 0.956 43 H 0.079 0.921 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.244 3.287 -13.621 22.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.011 4.011 3 N -0.824 5.824 4 C 0.105 3.895 5 C -0.571 4.571 6 H 0.096 0.904 7 C -0.129 4.129 8 N -0.533 5.533 9 Si 0.699 3.301 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.189 1.189 13 S 2.802 3.198 14 O -0.938 6.938 15 O -0.968 6.968 16 N -0.857 5.857 17 C -0.024 4.024 18 C 0.025 3.975 19 H 0.108 0.892 20 O -0.293 6.293 21 C -0.067 4.067 22 C 0.021 3.979 23 H 0.107 0.893 24 O -0.293 6.293 25 C -0.068 4.068 26 C -0.028 4.028 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.106 0.894 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.097 0.903 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.279 3.350 -13.919 21.678 hybrid contribution -0.796 0.561 0.966 1.372 sum -17.075 3.910 -12.953 21.786 Atomic orbital electron populations 1.22331 0.97306 1.01649 1.01904 1.21203 0.92938 0.82901 1.04098 1.57590 1.80935 1.21441 1.22431 1.19421 0.98018 0.91146 0.80933 1.21365 1.00893 1.28873 1.05928 0.90408 1.24862 0.95102 0.96023 0.96925 1.69897 1.20598 1.43959 1.18818 0.86911 0.81388 0.81586 0.80179 1.20050 1.20854 1.18931 1.01748 0.72355 0.73029 0.72662 1.93633 1.58243 1.57886 1.84013 1.93535 1.82717 1.57371 1.63224 1.59314 1.41805 1.22447 1.62181 1.22111 0.89601 0.95748 0.94955 1.23157 0.96697 0.93398 0.84223 0.89172 1.87921 1.43220 1.73052 1.25083 1.22846 0.86482 0.94979 1.02381 1.23347 0.90436 0.87660 0.96424 0.89262 1.87873 1.42082 1.14504 1.84796 1.22853 1.00311 0.83372 1.00220 1.22375 0.99292 0.82833 0.98346 0.91913 0.92044 0.93333 0.90253 0.89260 0.95022 0.95299 0.92510 0.89805 0.90802 0.89470 0.93682 0.93696 0.89420 0.93429 0.93720 0.90258 0.89110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.24 37.16 0.38 -1.87 16 2 C 0.11 1.93 6.40 -4.04 -0.03 1.90 16 3 N -0.98 -19.75 2.82 -115.66 -0.33 -20.07 16 4 C 0.23 5.30 4.17 -5.20 -0.02 5.27 16 5 C -0.53 -15.04 9.94 -34.44 -0.34 -15.38 16 6 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.89 -27.40 13.96 55.43 0.77 -26.63 16 9 Si 0.87 20.94 27.47 -169.99 -4.67 16.27 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 13 S 2.79 55.39 6.31 -107.50 -0.68 54.71 16 14 O -0.95 -22.55 16.43 -57.17 -0.94 -23.49 16 15 O -0.98 -20.48 16.27 -57.17 -0.93 -21.41 16 16 N -1.02 -15.53 3.76 -111.42 -0.42 -15.95 16 17 C 0.10 1.27 6.75 -3.07 -0.02 1.25 16 18 C 0.08 0.95 3.19 -24.90 -0.08 0.87 16 19 H 0.09 0.91 7.83 -51.93 -0.41 0.51 16 20 O -0.37 -4.13 10.43 -35.23 -0.37 -4.50 16 21 C 0.03 0.23 10.85 101.05 1.10 1.32 16 22 C 0.08 0.96 3.21 -24.58 -0.08 0.88 16 23 H 0.09 1.02 7.90 -51.93 -0.41 0.61 16 24 O -0.37 -4.35 10.51 -35.23 -0.37 -4.72 16 25 C 0.03 0.25 10.89 101.05 1.10 1.35 16 26 C 0.10 1.34 6.84 -2.53 -0.02 1.33 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.57 5.67 -51.93 -0.29 0.28 16 30 H 0.08 1.28 6.91 -51.93 -0.36 0.92 16 31 H 0.09 1.56 8.11 -51.93 -0.42 1.13 16 32 H 0.03 0.75 6.66 -51.93 -0.35 0.40 16 33 H 0.03 0.63 7.54 -51.93 -0.39 0.24 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.08 1.07 8.06 -51.93 -0.42 0.65 16 36 H 0.07 0.81 5.67 -51.93 -0.29 0.51 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.04 0.31 8.12 -51.93 -0.42 -0.11 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.41 8.14 -51.92 -0.42 -0.02 16 42 H 0.04 0.35 8.11 -51.93 -0.42 -0.07 16 43 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.09 1.28 7.78 -51.93 -0.40 0.87 16 LS Contribution 368.36 15.07 5.55 5.55 Total: -1.00 -35.00 368.36 -7.62 -42.61 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -7.14 Total: -1.35 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 1.89 Total: -1.04 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: 0.03 Total: -62.64 kcal Atomic # 8 Polarization: -51.51 SS G_CDS: -2.61 Total: -54.12 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Atomic # 16 Polarization: 55.39 SS G_CDS: -0.68 Total: 54.71 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.00 -7.62 -42.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337200162.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.955 kcal (2) G-P(sol) polarization free energy of solvation -34.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds