Wall clock time and date at job start Tue Mar 31 2020 05:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00237 * 2 1 4 4 H 1.08998 * 109.57264 * 330.15772 * 3 2 1 5 5 C 1.53103 * 109.45014 * 90.36800 * 3 2 1 6 6 O 1.42900 * 109.48854 * 62.38797 * 5 3 2 7 7 C 1.42893 * 114.10138 * 61.11047 * 6 5 3 8 8 C 1.53097 * 109.41481 * 298.84172 * 7 6 5 9 9 C 1.53176 * 109.16082 * 57.60880 * 8 7 6 10 10 H 1.08993 * 109.54488 * 62.97681 * 9 8 7 11 11 N 1.46499 * 109.54396 * 183.15351 * 9 8 7 12 12 C 1.46507 * 119.99920 * 52.42761 * 11 9 8 13 13 S 1.65604 * 120.00286 * 232.43556 * 11 9 8 14 14 O 1.42097 * 106.40199 * 201.63207 * 13 11 9 15 15 O 1.42106 * 106.39689 * 334.54993 * 13 11 9 16 16 N 1.65598 * 107.22035 * 88.08856 * 13 11 9 17 17 C 1.46499 * 119.99969 * 93.49157 * 16 13 11 18 18 C 1.46497 * 119.99742 * 273.49291 * 16 13 11 19 19 C 1.50707 * 109.47140 * 104.24485 * 18 16 13 20 20 H 1.08003 * 119.99600 * 5.23831 * 19 18 16 21 21 C 1.37877 * 120.00231 * 185.23731 * 19 18 16 22 22 N 1.31513 * 119.99904 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99838 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47092 * 90.00056 * 23 21 19 25 25 H 1.48497 * 109.46926 * 210.00321 * 23 21 19 26 26 H 1.48504 * 109.46977 * 329.99860 * 23 21 19 27 27 H 1.09000 * 109.46649 * 300.00289 * 1 2 3 28 28 H 1.09001 * 109.46921 * 59.99530 * 1 2 3 29 29 H 1.08994 * 109.47561 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.48430 * 302.35403 * 5 3 2 31 31 H 1.09003 * 109.41106 * 182.37345 * 5 3 2 32 32 H 1.08998 * 109.48349 * 178.86304 * 7 6 5 33 33 H 1.08998 * 109.49650 * 58.82971 * 7 6 5 34 34 H 1.08995 * 109.52121 * 297.70459 * 8 7 6 35 35 H 1.09000 * 109.52338 * 177.51137 * 8 7 6 36 36 H 1.08994 * 109.47186 * 264.54489 * 12 11 9 37 37 H 1.09000 * 109.46637 * 24.54413 * 12 11 9 38 38 H 1.09005 * 109.46933 * 144.53966 * 12 11 9 39 39 H 1.09005 * 109.46849 * 89.99755 * 17 16 13 40 40 H 1.08995 * 109.47062 * 209.99647 * 17 16 13 41 41 H 1.09002 * 109.47192 * 330.00434 * 17 16 13 42 42 H 1.09000 * 109.47109 * 224.23752 * 18 16 13 43 43 H 1.08997 * 109.47652 * 344.24452 * 18 16 13 44 44 H 0.97005 * 119.99597 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 2.0014 -0.5110 5 6 2.2261 1.7674 1.4436 6 8 3.1455 0.8873 2.0934 7 6 4.4399 0.8462 1.4894 8 6 4.3134 0.3450 0.0484 9 6 3.3607 1.2645 -0.7219 10 1 3.7806 2.2692 -0.7670 11 7 3.1745 0.7497 -2.0807 12 6 2.7745 -0.6445 -2.2875 13 16 3.4165 1.7435 -3.3831 14 8 2.6989 1.1677 -4.4660 15 8 3.1961 3.0696 -2.9223 16 7 5.0209 1.6476 -3.7816 17 6 5.4674 0.6915 -4.7979 18 6 5.9938 2.5188 -3.1179 19 6 6.7704 1.7220 -2.1014 20 1 6.6203 0.6554 -2.0223 21 6 7.6725 2.3546 -1.2725 22 7 8.3498 1.6592 -0.3852 23 14 7.9327 4.1993 -1.4100 24 1 6.9873 4.9013 -0.5051 25 1 9.3274 4.5325 -1.0239 26 1 7.6903 4.6304 -2.8102 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.2745 1.7560 1.9751 31 1 2.6303 2.7797 1.4435 32 1 5.0831 0.1711 2.0538 33 1 4.8734 1.8462 1.4897 34 1 3.9180 -0.6707 0.0494 35 1 5.2937 0.3548 -0.4281 36 1 3.6603 -1.2542 -2.4650 37 1 2.2544 -1.0084 -1.4014 38 1 2.1109 -0.7079 -3.1500 39 1 5.4394 1.1649 -5.7793 40 1 6.4865 0.3750 -4.5761 41 1 4.8083 -0.1767 -4.7944 42 1 6.6798 2.9286 -3.8593 43 1 5.4703 3.3336 -2.6178 44 1 8.9847 2.1043 0.1977 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882744010.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:53 Heat of formation + Delta-G solvation = -149.551307 kcal Electronic energy + Delta-G solvation = -28822.920193 eV Core-core repulsion = 24903.244336 eV Total energy + Delta-G solvation = -3919.675857 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.78111 -36.87361 -36.80781 -35.75802 -35.59900 -35.35361 -32.50553 -31.17083 -30.25643 -28.41522 -26.64686 -26.19630 -25.23655 -23.67343 -23.07392 -21.84892 -19.81903 -18.50510 -17.56102 -16.93417 -16.86699 -16.55480 -16.28659 -15.77823 -15.45627 -15.16049 -14.93948 -14.45651 -14.04750 -13.73661 -13.60233 -13.43626 -13.15549 -12.76258 -12.60136 -12.48084 -12.39027 -12.19403 -12.05463 -11.87751 -11.57828 -11.43241 -11.40369 -11.27398 -10.99931 -10.91680 -10.77694 -10.61978 -10.49592 -10.38287 -10.28440 -9.75316 -9.60498 -9.01335 -8.72435 -8.51614 -8.08917 -6.22793 -4.22853 1.13823 3.19631 3.27475 3.32560 3.35935 3.73277 3.98563 4.23774 4.28741 4.75249 4.86348 4.98787 5.05321 5.09384 5.27608 5.34621 5.41341 5.48569 5.53423 5.55801 5.64293 5.66203 5.74401 5.87546 5.93011 5.97497 6.02225 6.16636 6.26425 6.37733 6.44542 6.46742 6.61408 6.77990 6.85955 6.93737 7.04729 7.20022 7.34347 7.50483 7.54580 8.35324 8.80981 9.38049 10.88479 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012093 B = 0.007392 C = 0.005377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.813615 B = 3787.216733 C = 5206.145761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.045 3.955 4 H 0.070 0.930 5 C 0.044 3.956 6 O -0.378 6.378 7 C 0.066 3.934 8 C -0.159 4.159 9 C 0.167 3.833 10 H 0.107 0.893 11 N -0.993 5.993 12 C 0.080 3.920 13 S 2.782 3.218 14 O -0.994 6.994 15 O -0.986 6.986 16 N -0.991 5.991 17 C 0.107 3.893 18 C 0.214 3.786 19 C -0.538 4.538 20 H 0.084 0.916 21 C 0.079 3.921 22 N -0.888 5.888 23 Si 0.862 3.138 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.264 1.264 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.046 0.954 37 H 0.102 0.898 38 H 0.065 0.935 39 H 0.043 0.957 40 H 0.078 0.922 41 H 0.056 0.944 42 H 0.032 0.968 43 H 0.040 0.960 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.427 -2.789 0.609 11.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.279 6.279 3 C -0.015 4.015 4 H 0.088 0.912 5 C -0.034 4.034 6 O -0.296 6.296 7 C -0.011 4.011 8 C -0.198 4.198 9 C 0.060 3.940 10 H 0.125 0.875 11 N -0.830 5.830 12 C -0.065 4.065 13 S 2.792 3.208 14 O -0.978 6.978 15 O -0.970 6.970 16 N -0.832 5.832 17 C -0.040 4.040 18 C 0.090 3.910 19 C -0.577 4.577 20 H 0.102 0.898 21 C -0.124 4.124 22 N -0.526 5.526 23 Si 0.689 3.311 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.189 1.189 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.129 0.871 36 H 0.064 0.936 37 H 0.120 0.880 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.097 0.903 41 H 0.075 0.925 42 H 0.050 0.950 43 H 0.058 0.942 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.868 -2.534 0.427 12.143 hybrid contribution 0.512 1.124 -0.039 1.235 sum -11.357 -1.410 0.388 11.451 Atomic orbital electron populations 1.22783 0.82082 1.02490 0.99624 1.87930 1.18689 1.26735 1.94559 1.23349 0.96098 0.85682 0.96354 0.91224 1.22990 0.94307 0.93543 0.92581 1.87898 1.22691 1.65201 1.53837 1.22590 0.83634 1.01444 0.93470 1.22540 1.02283 0.99488 0.95471 1.20869 0.92872 0.99212 0.81075 0.87491 1.57717 1.83107 1.23277 1.18906 1.21732 0.99848 0.81158 1.03755 1.01865 0.73180 0.73147 0.72643 1.93526 1.71723 1.79564 1.52956 1.93547 1.85255 1.36211 1.82015 1.57457 1.25948 1.49473 1.50358 1.21237 1.01796 0.91146 0.89804 1.19576 0.88305 0.89801 0.93299 1.21387 1.22452 0.96821 1.17003 0.89804 1.24815 0.95194 0.97670 0.94764 1.69877 1.25809 1.35846 1.21049 0.87061 0.77970 0.86594 0.79517 1.19766 1.20981 1.18881 0.94348 0.94306 0.89781 0.89089 0.92130 0.88546 0.92731 0.90785 0.87055 0.93569 0.88008 0.91641 0.93836 0.90332 0.92528 0.94996 0.94182 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.82 101.05 1.09 1.38 16 2 O -0.36 -4.99 6.57 -42.62 -0.28 -5.27 16 3 C 0.05 0.66 2.64 -26.59 -0.07 0.59 16 4 H 0.07 0.97 7.79 -51.93 -0.40 0.56 16 5 C 0.04 0.61 6.48 37.21 0.24 0.85 16 6 O -0.38 -6.06 10.70 -42.62 -0.46 -6.52 16 7 C 0.07 1.09 6.84 37.21 0.25 1.34 16 8 C -0.16 -2.76 5.20 -26.59 -0.14 -2.90 16 9 C 0.17 2.85 2.43 -67.75 -0.16 2.68 16 10 H 0.11 2.01 7.12 -51.93 -0.37 1.64 16 11 N -0.99 -17.00 3.14 -114.41 -0.36 -17.36 16 12 C 0.08 1.19 9.27 59.85 0.55 1.74 16 13 S 2.78 53.98 6.05 -107.50 -0.65 53.33 16 14 O -0.99 -19.95 15.74 -57.17 -0.90 -20.85 16 15 O -0.99 -21.24 15.45 -57.17 -0.88 -22.13 16 16 N -0.99 -19.68 3.26 -123.05 -0.40 -20.08 16 17 C 0.11 1.80 10.25 59.85 0.61 2.42 16 18 C 0.21 4.80 4.56 -5.19 -0.02 4.77 16 19 C -0.54 -13.23 8.82 -34.44 -0.30 -13.53 16 20 H 0.08 2.20 7.24 -52.48 -0.38 1.82 16 21 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 22 N -0.89 -24.08 13.96 55.43 0.77 -23.31 16 23 Si 0.86 19.87 27.37 -169.99 -4.65 15.21 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.26 -5.95 6.70 56.52 0.38 -5.57 16 27 H 0.04 0.36 7.86 -51.93 -0.41 -0.05 16 28 H 0.04 0.39 8.09 -51.93 -0.42 -0.03 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.09 1.05 7.86 -51.93 -0.41 0.64 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 1.24 6.87 -51.93 -0.36 0.89 16 35 H 0.11 2.27 6.36 -51.93 -0.33 1.94 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 1.43 4.78 -51.93 -0.25 1.18 16 38 H 0.06 0.93 7.16 -51.93 -0.37 0.56 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.08 1.34 7.92 -51.93 -0.41 0.93 16 41 H 0.06 0.86 7.70 -51.93 -0.40 0.46 16 42 H 0.03 0.72 7.56 -51.93 -0.39 0.32 16 43 H 0.04 0.93 6.02 -51.93 -0.31 0.62 16 44 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 353.42 15.07 5.33 5.33 Total: -1.00 -29.62 353.42 -7.43 -37.05 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -6.91 Total: 3.29 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 1.96 Total: 1.30 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: 0.01 Total: -60.75 kcal Atomic # 8 Polarization: -52.25 SS G_CDS: -2.52 Total: -54.77 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.65 Total: 15.21 kcal Atomic # 16 Polarization: 53.98 SS G_CDS: -0.65 Total: 53.33 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.62 -7.43 -37.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882744010.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.499 kcal (2) G-P(sol) polarization free energy of solvation -29.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds