Wall clock time and date at job start Tue Mar 31 2020 05:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00237 * 2 1 4 4 H 1.08998 * 109.57264 * 330.15772 * 3 2 1 5 5 C 1.53103 * 109.45014 * 90.36800 * 3 2 1 6 6 O 1.42900 * 109.48854 * 62.38797 * 5 3 2 7 7 C 1.42893 * 114.10138 * 61.11047 * 6 5 3 8 8 C 1.53097 * 109.41481 * 298.84172 * 7 6 5 9 9 C 1.53176 * 109.16082 * 57.60880 * 8 7 6 10 10 H 1.08993 * 109.54488 * 62.97681 * 9 8 7 11 11 N 1.46499 * 109.54396 * 183.15351 * 9 8 7 12 12 C 1.46507 * 119.99920 * 52.42761 * 11 9 8 13 13 S 1.65604 * 120.00286 * 232.43556 * 11 9 8 14 14 O 1.42097 * 106.40199 * 201.63207 * 13 11 9 15 15 O 1.42106 * 106.39689 * 334.54993 * 13 11 9 16 16 N 1.65598 * 107.22035 * 88.08856 * 13 11 9 17 17 C 1.46499 * 119.99969 * 93.49157 * 16 13 11 18 18 C 1.46497 * 119.99742 * 273.49291 * 16 13 11 19 19 C 1.50707 * 109.47140 * 104.24485 * 18 16 13 20 20 H 1.08003 * 119.99600 * 5.23831 * 19 18 16 21 21 C 1.37877 * 120.00231 * 185.23731 * 19 18 16 22 22 N 1.31513 * 119.99904 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99838 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47092 * 90.00056 * 23 21 19 25 25 H 1.48497 * 109.46926 * 210.00321 * 23 21 19 26 26 H 1.48504 * 109.46977 * 329.99860 * 23 21 19 27 27 H 1.09000 * 109.46649 * 300.00289 * 1 2 3 28 28 H 1.09001 * 109.46921 * 59.99530 * 1 2 3 29 29 H 1.08994 * 109.47561 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.48430 * 302.35403 * 5 3 2 31 31 H 1.09003 * 109.41106 * 182.37345 * 5 3 2 32 32 H 1.08998 * 109.48349 * 178.86304 * 7 6 5 33 33 H 1.08998 * 109.49650 * 58.82971 * 7 6 5 34 34 H 1.08995 * 109.52121 * 297.70459 * 8 7 6 35 35 H 1.09000 * 109.52338 * 177.51137 * 8 7 6 36 36 H 1.08994 * 109.47186 * 264.54489 * 12 11 9 37 37 H 1.09000 * 109.46637 * 24.54413 * 12 11 9 38 38 H 1.09005 * 109.46933 * 144.53966 * 12 11 9 39 39 H 1.09005 * 109.46849 * 89.99755 * 17 16 13 40 40 H 1.08995 * 109.47062 * 209.99647 * 17 16 13 41 41 H 1.09002 * 109.47192 * 330.00434 * 17 16 13 42 42 H 1.09000 * 109.47109 * 224.23752 * 18 16 13 43 43 H 1.08997 * 109.47652 * 344.24452 * 18 16 13 44 44 H 0.97005 * 119.99597 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 2.0014 -0.5110 5 6 2.2261 1.7674 1.4436 6 8 3.1455 0.8873 2.0934 7 6 4.4399 0.8462 1.4894 8 6 4.3134 0.3450 0.0484 9 6 3.3607 1.2645 -0.7219 10 1 3.7806 2.2692 -0.7670 11 7 3.1745 0.7497 -2.0807 12 6 2.7745 -0.6445 -2.2875 13 16 3.4165 1.7435 -3.3831 14 8 2.6989 1.1677 -4.4660 15 8 3.1961 3.0696 -2.9223 16 7 5.0209 1.6476 -3.7816 17 6 5.4674 0.6915 -4.7979 18 6 5.9938 2.5188 -3.1179 19 6 6.7704 1.7220 -2.1014 20 1 6.6203 0.6554 -2.0223 21 6 7.6725 2.3546 -1.2725 22 7 8.3498 1.6592 -0.3852 23 14 7.9327 4.1993 -1.4100 24 1 6.9873 4.9013 -0.5051 25 1 9.3274 4.5325 -1.0239 26 1 7.6903 4.6304 -2.8102 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.2745 1.7560 1.9751 31 1 2.6303 2.7797 1.4435 32 1 5.0831 0.1711 2.0538 33 1 4.8734 1.8462 1.4897 34 1 3.9180 -0.6707 0.0494 35 1 5.2937 0.3548 -0.4281 36 1 3.6603 -1.2542 -2.4650 37 1 2.2544 -1.0084 -1.4014 38 1 2.1109 -0.7079 -3.1500 39 1 5.4394 1.1649 -5.7793 40 1 6.4865 0.3750 -4.5761 41 1 4.8083 -0.1767 -4.7944 42 1 6.6798 2.9286 -3.8593 43 1 5.4703 3.3336 -2.6178 44 1 8.9847 2.1043 0.1977 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882744010.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:52 Heat of formation + Delta-G solvation = -171.409998 kcal Electronic energy + Delta-G solvation = -28823.868057 eV Core-core repulsion = 24903.244336 eV Total energy + Delta-G solvation = -3920.623721 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.99335 -38.43791 -37.97409 -37.32436 -36.99995 -36.92104 -34.43839 -32.49579 -31.44547 -30.19572 -27.65430 -27.33242 -26.80644 -25.00505 -24.33061 -23.62033 -21.09306 -19.99557 -19.21902 -18.62284 -18.47348 -17.85557 -17.48059 -17.12735 -16.67351 -16.53669 -16.15297 -16.12162 -15.57745 -15.11634 -14.78609 -14.70984 -14.62679 -14.33701 -14.13932 -13.99423 -13.79062 -13.55263 -13.49820 -13.21824 -13.14632 -12.98509 -12.98028 -12.65956 -12.44969 -12.29095 -12.23706 -12.07780 -12.02378 -11.86238 -11.65566 -11.48873 -10.98665 -10.71091 -10.23788 -9.90246 -9.61588 -8.22648 -6.24758 -0.38970 1.36036 1.41726 1.47600 1.86184 2.36709 2.46394 2.66992 3.04829 3.11392 3.28138 3.63219 3.69754 3.87466 3.99896 4.11824 4.12826 4.32411 4.42783 4.51709 4.54815 4.60929 4.63493 4.66698 4.71423 4.72391 4.79481 4.89955 4.92049 4.98498 5.02497 5.05193 5.20083 5.31995 5.35418 5.41497 5.47866 5.56946 5.85470 6.11179 6.35995 6.37414 6.79243 7.37978 8.90795 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012093 B = 0.007392 C = 0.005377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.813615 B = 3787.216733 C = 5206.145761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.374 6.374 3 C 0.051 3.949 4 H 0.079 0.921 5 C 0.039 3.961 6 O -0.383 6.383 7 C 0.071 3.929 8 C -0.147 4.147 9 C 0.162 3.838 10 H 0.085 0.915 11 N -0.990 5.990 12 C 0.079 3.921 13 S 2.791 3.209 14 O -0.998 6.998 15 O -1.009 7.009 16 N -0.999 5.999 17 C 0.099 3.901 18 C 0.220 3.780 19 C -0.523 4.523 20 H 0.061 0.939 21 C 0.037 3.963 22 N -0.924 5.924 23 Si 0.905 3.095 24 H -0.270 1.270 25 H -0.283 1.283 26 H -0.253 1.253 27 H 0.052 0.948 28 H 0.042 0.958 29 H 0.101 0.899 30 H 0.120 0.880 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.042 0.958 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.048 0.952 37 H 0.113 0.887 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.036 0.964 43 H 0.034 0.966 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.040 -2.741 0.419 13.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.293 6.293 3 C -0.009 4.009 4 H 0.096 0.904 5 C -0.039 4.039 6 O -0.301 6.301 7 C -0.007 4.007 8 C -0.186 4.186 9 C 0.056 3.944 10 H 0.103 0.897 11 N -0.829 5.829 12 C -0.065 4.065 13 S 2.801 3.199 14 O -0.983 6.983 15 O -0.993 6.993 16 N -0.839 5.839 17 C -0.046 4.046 18 C 0.095 3.905 19 C -0.562 4.562 20 H 0.079 0.921 21 C -0.163 4.163 22 N -0.563 5.563 23 Si 0.730 3.270 24 H -0.195 1.195 25 H -0.209 1.209 26 H -0.177 1.177 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.120 0.880 30 H 0.138 0.862 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.131 0.869 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.498 -2.492 0.208 13.728 hybrid contribution 0.930 1.009 0.005 1.372 sum -12.568 -1.483 0.213 12.657 Atomic orbital electron populations 1.23011 0.80097 1.03995 1.00496 1.87887 1.20776 1.26026 1.94655 1.23191 0.94732 0.86511 0.96453 0.90352 1.23220 0.95039 0.93280 0.92337 1.87887 1.22389 1.65834 1.54028 1.22470 0.84347 1.00764 0.93097 1.22345 1.00490 1.00008 0.95720 1.20871 0.94534 0.97861 0.81180 0.89666 1.57576 1.82907 1.24050 1.18331 1.21875 1.00227 0.79780 1.04632 1.01503 0.72906 0.72817 0.72716 1.93514 1.71721 1.79556 1.53477 1.93511 1.85544 1.37867 1.82387 1.57460 1.25634 1.49850 1.50952 1.21438 1.01897 0.91390 0.89874 1.19362 0.88539 0.89714 0.92904 1.21435 1.21927 0.95917 1.16966 0.92105 1.25381 0.95305 1.00924 0.94723 1.69979 1.26872 1.37260 1.22193 0.86353 0.77838 0.82741 0.80065 1.19506 1.20863 1.17682 0.92913 0.93983 0.88041 0.86188 0.91731 0.88245 0.93962 0.90218 0.90534 0.93302 0.86921 0.90844 0.91996 0.90816 0.90902 0.94563 0.94822 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.82 113.37 1.23 1.58 16 2 O -0.37 -9.49 6.57 -141.91 -0.93 -10.42 16 3 C 0.05 1.42 2.64 30.69 0.08 1.50 16 4 H 0.08 2.03 7.79 -2.39 -0.02 2.01 16 5 C 0.04 1.00 6.48 72.02 0.47 1.47 16 6 O -0.38 -11.80 10.70 -141.91 -1.52 -13.32 16 7 C 0.07 2.36 6.84 72.01 0.49 2.85 16 8 C -0.15 -5.13 5.20 30.69 0.16 -4.97 16 9 C 0.16 5.50 2.43 45.11 0.11 5.61 16 10 H 0.09 3.25 7.12 -2.39 -0.02 3.23 16 11 N -0.99 -33.13 3.14 -515.89 -1.62 -34.75 16 12 C 0.08 2.23 9.27 127.77 1.18 3.41 16 13 S 2.79 105.92 6.05 -56.49 -0.34 105.57 16 14 O -1.00 -38.49 15.74 -128.00 -2.01 -40.50 16 15 O -1.01 -42.95 15.45 -128.00 -1.98 -44.93 16 16 N -1.00 -38.98 3.26 -543.22 -1.77 -40.75 16 17 C 0.10 3.25 10.25 127.77 1.31 4.55 16 18 C 0.22 9.78 4.56 85.64 0.39 10.17 16 19 C -0.52 -26.07 8.82 25.60 0.23 -25.84 16 20 H 0.06 3.28 7.24 -2.91 -0.02 3.26 16 21 C 0.04 1.92 5.47 84.65 0.46 2.39 16 22 N -0.92 -51.07 13.96 21.45 0.30 -50.77 16 23 Si 0.91 40.59 27.37 68.60 1.88 42.47 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 26 H -0.25 -10.81 6.70 99.48 0.67 -10.14 16 27 H 0.05 0.80 7.86 -2.39 -0.02 0.78 16 28 H 0.04 0.73 8.09 -2.39 -0.02 0.71 16 29 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.12 2.39 7.86 -2.39 -0.02 2.37 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 33 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 2.65 6.87 -2.39 -0.02 2.64 16 35 H 0.08 3.24 6.36 -2.39 -0.02 3.23 16 36 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.11 2.96 4.78 -2.39 -0.01 2.94 16 38 H 0.07 1.95 7.16 -2.38 -0.02 1.93 16 39 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 40 H 0.07 2.46 7.92 -2.39 -0.02 2.44 16 41 H 0.07 2.12 7.70 -2.39 -0.02 2.10 16 42 H 0.04 1.59 7.56 -2.39 -0.02 1.57 16 43 H 0.03 1.56 6.02 -2.39 -0.01 1.54 16 44 H 0.27 14.01 8.31 -92.70 -0.77 13.24 16 Total: -1.00 -62.20 353.42 -0.94 -63.14 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.95 Total: 21.54 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 6.11 Total: 2.71 kcal Atomic # 7 Polarization: -123.17 SS G_CDS: -3.09 Total: -126.27 kcal Atomic # 8 Polarization: -102.73 SS G_CDS: -6.44 Total: -109.17 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 1.88 Total: 42.47 kcal Atomic # 16 Polarization: 105.92 SS G_CDS: -0.34 Total: 105.57 kcal Total: -62.20 -0.94 -63.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882744010.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.268 kcal (2) G-P(sol) polarization free energy of solvation -62.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds