Wall clock time and date at job start Tue Mar 31 2020 05:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34776 * 119.89460 * 2 1 4 4 N 1.30439 * 121.82243 * 179.68900 * 3 2 1 5 5 C 1.34323 * 121.47502 * 0.58408 * 4 3 2 6 6 C 1.48565 * 120.20809 * 179.70175 * 5 4 3 7 7 O 1.21466 * 120.00099 * 179.72659 * 6 5 4 8 8 N 1.34778 * 120.00100 * 359.72651 * 6 5 4 9 9 C 1.46495 * 120.00075 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47101 * 180.02562 * 9 8 6 11 11 H 1.09003 * 110.64405 * 303.31278 * 10 9 8 12 12 C 1.54316 * 110.72079 * 66.45323 * 10 9 8 13 13 N 1.47022 * 107.27320 * 140.73500 * 12 10 9 14 14 C 1.36938 * 125.65145 * 181.02283 * 13 12 10 15 15 H 1.08002 * 119.99798 * 13.61610 * 14 13 12 16 16 C 1.38805 * 120.00326 * 193.61334 * 14 13 12 17 17 N 1.31619 * 119.99643 * 27.28488 * 16 14 13 18 18 Si 1.86803 * 120.00275 * 207.28323 * 16 14 13 19 19 H 1.48496 * 109.47008 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46883 * 240.00007 * 18 16 14 21 21 H 1.48496 * 109.47035 * 120.00305 * 18 16 14 22 22 C 1.47423 * 108.69958 * 1.28573 * 13 12 10 23 23 C 1.55125 * 104.72395 * 335.55457 * 22 13 12 24 24 H 1.09001 * 111.19051 * 279.19096 * 23 22 13 25 25 O 1.42902 * 110.93665 * 155.28677 * 23 22 13 26 26 C 1.37926 * 119.58174 * 359.42948 * 5 4 3 27 27 C 1.34985 * 119.89209 * 179.97438 * 2 1 3 28 28 O 1.21911 * 120.71441 * 0.02562 * 27 2 1 29 29 H 1.09004 * 109.47511 * 270.02256 * 1 2 3 30 30 H 1.09004 * 109.47202 * 30.01854 * 1 2 3 31 31 H 1.09001 * 109.47499 * 150.02019 * 1 2 3 32 32 H 1.07996 * 119.09064 * 359.97438 * 3 2 1 33 33 H 0.97009 * 119.99276 * 359.97438 * 8 6 5 34 34 H 1.08998 * 109.47157 * 60.00072 * 9 8 6 35 35 H 1.08995 * 109.46843 * 300.00103 * 9 8 6 36 36 H 1.08999 * 109.88637 * 21.31506 * 12 10 9 37 37 H 1.09000 * 110.01685 * 260.22216 * 12 10 9 38 38 H 0.96994 * 120.00297 * 5.84617 * 17 16 14 39 39 H 1.09002 * 110.36499 * 94.49043 * 22 13 12 40 40 H 1.09005 * 110.36367 * 216.80049 * 22 13 12 41 41 H 0.96700 * 113.99787 * 67.96452 * 25 23 22 42 42 H 1.08005 * 120.83229 * 180.24851 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1367 1.1684 0.0000 4 7 3.4403 1.2123 0.0060 5 6 4.1798 0.0910 0.0009 6 6 5.6631 0.1739 0.0013 7 8 6.3282 -0.8426 0.0016 8 7 6.2709 1.3768 0.0013 9 6 7.7336 1.4585 0.0022 10 6 8.1624 2.9272 0.0026 11 1 7.7329 3.4531 -0.8500 12 6 7.7610 3.6127 1.3256 13 7 8.8618 4.5113 1.7032 14 6 8.9058 5.2905 2.8283 15 1 8.2030 5.1206 3.6307 16 6 9.8537 6.2986 2.9378 17 7 10.3318 6.8727 1.8542 18 14 10.4506 6.8405 4.6229 19 1 9.7627 6.0449 5.6712 20 1 10.1463 8.2811 4.8161 21 1 11.9168 6.6268 4.7209 22 6 9.9075 4.4392 0.6665 23 6 9.7089 3.0516 0.0020 24 1 10.1647 2.2606 0.5977 25 8 10.2227 3.0457 -1.3314 26 6 3.5534 -1.1378 0.0009 27 6 2.1376 -1.1703 0.0005 28 8 1.5393 -2.2324 0.0005 29 1 -0.3634 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8902 -0.5135 32 1 1.5802 2.0940 -0.0004 33 1 5.7397 2.1885 0.0006 34 1 8.1256 0.9654 -0.8873 35 1 8.1243 0.9660 0.8926 36 1 7.6123 2.8622 2.1019 37 1 6.8453 4.1871 1.1854 38 1 9.9619 6.6523 0.9851 39 1 9.7718 5.2357 -0.0651 40 1 10.8965 4.5041 1.1202 41 1 11.1854 3.1212 -1.3823 42 1 4.1282 -2.0522 0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958148888.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:46 Heat of formation + Delta-G solvation = -43.879509 kcal Electronic energy + Delta-G solvation = -26686.496392 eV Core-core repulsion = 22668.251608 eV Total energy + Delta-G solvation = -4018.244784 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.20655 -39.87887 -38.49709 -37.94779 -35.68455 -35.40043 -34.92073 -32.43042 -31.45414 -29.92984 -28.63847 -27.79047 -25.81719 -24.99985 -24.55776 -23.28648 -21.14658 -20.38810 -20.03791 -18.99916 -18.21489 -17.65671 -17.51421 -16.96973 -16.88571 -16.16730 -15.84616 -15.48008 -14.90155 -14.76109 -14.47655 -14.18278 -13.84470 -13.75189 -13.62054 -13.56046 -13.37449 -13.25108 -12.94827 -12.48899 -12.23448 -12.00876 -11.20456 -11.01799 -10.95043 -10.86293 -10.74219 -10.68894 -10.56561 -10.27838 -10.09147 -9.97210 -9.76553 -9.37312 -9.14490 -8.95627 -8.47955 -7.03898 -6.15519 -3.19647 -0.12200 1.20943 1.91434 2.48413 2.84305 3.34979 3.46666 3.48626 3.51542 3.64856 3.99479 4.08117 4.37101 4.47117 4.57931 4.64865 4.74918 4.86482 4.96113 5.04605 5.07550 5.23118 5.26908 5.33082 5.54194 5.68052 5.72498 5.77715 5.85948 6.01686 6.02603 6.16706 6.31396 6.47653 6.64616 6.80372 6.90085 7.08683 7.28943 7.44257 7.68705 7.94800 7.99621 8.41460 8.94759 9.74698 10.26569 11.17818 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017464 B = 0.002626 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.901202 B =10658.838087 C =11632.384753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.525 5.525 3 C 0.376 3.624 4 N -0.524 5.524 5 C 0.133 3.867 6 C 0.566 3.434 7 O -0.526 6.526 8 N -0.699 5.699 9 C 0.131 3.869 10 C -0.104 4.104 11 H 0.089 0.911 12 C 0.142 3.858 13 N -0.601 5.601 14 C -0.337 4.337 15 H 0.069 0.931 16 C -0.026 4.026 17 N -0.921 5.921 18 Si 1.070 2.930 19 H -0.292 1.292 20 H -0.294 1.294 21 H -0.290 1.290 22 C 0.120 3.880 23 C 0.091 3.909 24 H 0.067 0.933 25 O -0.566 6.566 26 C -0.213 4.213 27 C 0.518 3.482 28 O -0.527 6.527 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.212 0.788 33 H 0.414 0.586 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.031 0.969 37 H 0.028 0.972 38 H 0.270 0.730 39 H 0.036 0.964 40 H 0.056 0.944 41 H 0.378 0.622 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.955 -10.313 -6.169 20.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.243 5.243 3 C 0.092 3.908 4 N -0.247 5.247 5 C 0.011 3.989 6 C 0.350 3.650 7 O -0.402 6.402 8 N -0.349 5.349 9 C 0.008 3.992 10 C -0.124 4.124 11 H 0.108 0.892 12 C 0.016 3.984 13 N -0.329 5.329 14 C -0.465 4.465 15 H 0.087 0.913 16 C -0.227 4.227 17 N -0.562 5.562 18 Si 0.899 3.101 19 H -0.218 1.218 20 H -0.221 1.221 21 H -0.216 1.216 22 C -0.007 4.007 23 C 0.031 3.969 24 H 0.084 0.916 25 O -0.370 6.370 26 C -0.239 4.239 27 C 0.316 3.684 28 O -0.404 6.404 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.228 0.772 33 H 0.250 0.750 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.049 0.951 37 H 0.046 0.954 38 H 0.082 0.918 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.225 0.775 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -15.857 -10.121 -5.411 19.575 hybrid contribution -1.262 -1.048 -0.598 1.746 sum -17.119 -11.169 -6.009 21.305 Atomic orbital electron populations 1.22269 0.76101 1.05644 1.04624 1.46705 1.10953 1.08205 1.58466 1.24967 0.89004 0.89975 0.86901 1.68307 1.04226 1.29679 1.22537 1.21455 0.94751 0.89108 0.93554 1.17783 0.85311 0.84194 0.77762 1.90809 1.64584 1.35004 1.49769 1.45876 1.08327 1.08350 1.72373 1.21502 0.78356 0.96625 1.02738 1.22397 0.95531 0.94270 1.00160 0.89226 1.21386 0.92240 0.92890 0.91903 1.44408 1.14953 1.49595 1.23987 1.19813 1.20577 1.13131 0.92930 0.91316 1.25750 0.98307 0.93715 1.04950 1.70733 1.46460 1.39465 0.99554 0.83473 0.76467 0.75564 0.74577 1.21813 1.22135 1.21630 1.22215 0.94132 0.92795 0.91527 1.23094 0.92671 0.98440 0.82743 0.91552 1.86412 1.26518 1.96880 1.27215 1.23462 0.92861 1.00601 1.06991 1.17309 0.88694 0.83284 0.79108 1.90961 1.70326 1.28162 1.50989 0.89851 0.88775 0.88501 0.77161 0.74977 0.90666 0.90819 0.95077 0.95389 0.91819 0.94642 0.92581 0.77494 0.81206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.18 10.39 59.84 0.62 0.80 16 2 N -0.52 -3.61 2.97 -128.43 -0.38 -3.99 16 3 C 0.38 2.13 11.45 -90.67 -1.04 1.09 16 4 N -0.52 -4.87 9.64 -10.82 -0.10 -4.97 16 5 C 0.13 1.56 6.77 -82.63 -0.56 1.00 16 6 C 0.57 7.98 7.83 -12.00 -0.09 7.89 16 7 O -0.53 -8.89 16.37 5.40 0.09 -8.80 16 8 N -0.70 -9.32 5.39 -61.02 -0.33 -9.64 16 9 C 0.13 1.91 5.01 -4.05 -0.02 1.89 16 10 C -0.10 -1.72 2.74 -88.79 -0.24 -1.96 16 11 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 12 C 0.14 2.79 6.52 -3.07 -0.02 2.77 16 13 N -0.60 -14.79 3.33 -169.94 -0.57 -15.35 16 14 C -0.34 -9.32 10.05 -15.06 -0.15 -9.47 16 15 H 0.07 1.90 7.96 -52.49 -0.42 1.48 16 16 C -0.03 -0.73 5.09 -17.43 -0.09 -0.82 16 17 N -0.92 -27.32 12.82 55.49 0.71 -26.60 16 18 Si 1.07 25.02 30.00 -169.99 -5.10 19.92 16 19 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 22 C 0.12 2.68 4.96 -2.41 -0.01 2.67 16 23 C 0.09 1.60 3.89 -24.47 -0.10 1.50 16 24 H 0.07 1.12 8.05 -51.93 -0.42 0.70 16 25 O -0.57 -8.96 13.47 -35.23 -0.47 -9.44 16 26 C -0.21 -2.52 9.67 -38.41 -0.37 -2.89 16 27 C 0.52 5.78 7.47 -14.88 -0.11 5.67 16 28 O -0.53 -7.45 16.77 5.00 0.08 -7.36 16 29 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 -0.03 8.01 -51.93 -0.42 -0.44 16 31 H 0.10 0.45 7.44 -51.93 -0.39 0.06 16 32 H 0.21 0.12 8.01 -52.49 -0.42 -0.30 16 33 H 0.41 5.04 7.69 -40.82 -0.31 4.72 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.07 1.13 8.06 -51.93 -0.42 0.71 16 36 H 0.03 0.62 7.77 -51.93 -0.40 0.21 16 37 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.27 8.01 5.83 -40.82 -0.24 7.77 16 39 H 0.04 0.87 6.84 -51.93 -0.36 0.51 16 40 H 0.06 1.37 7.73 -51.93 -0.40 0.97 16 41 H 0.38 4.49 9.12 45.56 0.42 4.91 16 42 H 0.17 2.10 7.68 -52.48 -0.40 1.70 16 LS Contribution 356.68 15.07 5.38 5.38 Total: -1.00 -37.40 356.68 -7.54 -44.94 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -4.66 Total: 5.80 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: -2.18 Total: 10.14 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -0.67 Total: -60.57 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.30 Total: -25.61 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.10 Total: 19.92 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -37.40 -7.54 -44.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958148888.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.063 kcal (2) G-P(sol) polarization free energy of solvation -37.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds