Wall clock time and date at job start Tue Mar 31 2020 05:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34776 * 119.89460 * 2 1 4 4 N 1.30439 * 121.82243 * 179.68900 * 3 2 1 5 5 C 1.34323 * 121.47502 * 0.58408 * 4 3 2 6 6 C 1.48565 * 120.20809 * 179.70175 * 5 4 3 7 7 O 1.21466 * 120.00099 * 179.72659 * 6 5 4 8 8 N 1.34778 * 120.00100 * 359.72651 * 6 5 4 9 9 C 1.46495 * 120.00075 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47101 * 180.02562 * 9 8 6 11 11 H 1.09003 * 110.64405 * 303.31278 * 10 9 8 12 12 C 1.54316 * 110.72079 * 66.45323 * 10 9 8 13 13 N 1.47022 * 107.27320 * 140.73500 * 12 10 9 14 14 C 1.36938 * 125.65145 * 181.02283 * 13 12 10 15 15 H 1.08002 * 119.99798 * 13.61610 * 14 13 12 16 16 C 1.38805 * 120.00326 * 193.61334 * 14 13 12 17 17 N 1.31619 * 119.99643 * 27.28488 * 16 14 13 18 18 Si 1.86803 * 120.00275 * 207.28323 * 16 14 13 19 19 H 1.48496 * 109.47008 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46883 * 240.00007 * 18 16 14 21 21 H 1.48496 * 109.47035 * 120.00305 * 18 16 14 22 22 C 1.47423 * 108.69958 * 1.28573 * 13 12 10 23 23 C 1.55125 * 104.72395 * 335.55457 * 22 13 12 24 24 H 1.09001 * 111.19051 * 279.19096 * 23 22 13 25 25 O 1.42902 * 110.93665 * 155.28677 * 23 22 13 26 26 C 1.37926 * 119.58174 * 359.42948 * 5 4 3 27 27 C 1.34985 * 119.89209 * 179.97438 * 2 1 3 28 28 O 1.21911 * 120.71441 * 0.02562 * 27 2 1 29 29 H 1.09004 * 109.47511 * 270.02256 * 1 2 3 30 30 H 1.09004 * 109.47202 * 30.01854 * 1 2 3 31 31 H 1.09001 * 109.47499 * 150.02019 * 1 2 3 32 32 H 1.07996 * 119.09064 * 359.97438 * 3 2 1 33 33 H 0.97009 * 119.99276 * 359.97438 * 8 6 5 34 34 H 1.08998 * 109.47157 * 60.00072 * 9 8 6 35 35 H 1.08995 * 109.46843 * 300.00103 * 9 8 6 36 36 H 1.08999 * 109.88637 * 21.31506 * 12 10 9 37 37 H 1.09000 * 110.01685 * 260.22216 * 12 10 9 38 38 H 0.96994 * 120.00297 * 5.84617 * 17 16 14 39 39 H 1.09002 * 110.36499 * 94.49043 * 22 13 12 40 40 H 1.09005 * 110.36367 * 216.80049 * 22 13 12 41 41 H 0.96700 * 113.99787 * 67.96452 * 25 23 22 42 42 H 1.08005 * 120.83229 * 180.24851 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1367 1.1684 0.0000 4 7 3.4403 1.2123 0.0060 5 6 4.1798 0.0910 0.0009 6 6 5.6631 0.1739 0.0013 7 8 6.3282 -0.8426 0.0016 8 7 6.2709 1.3768 0.0013 9 6 7.7336 1.4585 0.0022 10 6 8.1624 2.9272 0.0026 11 1 7.7329 3.4531 -0.8500 12 6 7.7610 3.6127 1.3256 13 7 8.8618 4.5113 1.7032 14 6 8.9058 5.2905 2.8283 15 1 8.2030 5.1206 3.6307 16 6 9.8537 6.2986 2.9378 17 7 10.3318 6.8727 1.8542 18 14 10.4506 6.8405 4.6229 19 1 9.7627 6.0449 5.6712 20 1 10.1463 8.2811 4.8161 21 1 11.9168 6.6268 4.7209 22 6 9.9075 4.4392 0.6665 23 6 9.7089 3.0516 0.0020 24 1 10.1647 2.2606 0.5977 25 8 10.2227 3.0457 -1.3314 26 6 3.5534 -1.1378 0.0009 27 6 2.1376 -1.1703 0.0005 28 8 1.5393 -2.2324 0.0005 29 1 -0.3634 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8902 -0.5135 32 1 1.5802 2.0940 -0.0004 33 1 5.7397 2.1885 0.0006 34 1 8.1256 0.9654 -0.8873 35 1 8.1243 0.9660 0.8926 36 1 7.6123 2.8622 2.1019 37 1 6.8453 4.1871 1.1854 38 1 9.9619 6.6523 0.9851 39 1 9.7718 5.2357 -0.0651 40 1 10.8965 4.5041 1.1202 41 1 11.1854 3.1212 -1.3823 42 1 4.1282 -2.0522 0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958148888.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:45 Heat of formation + Delta-G solvation = -74.067098 kcal Electronic energy + Delta-G solvation = -26687.805424 eV Core-core repulsion = 22668.251608 eV Total energy + Delta-G solvation = -4019.553816 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.93326 -41.03474 -39.96975 -38.81364 -36.82963 -36.39145 -36.35266 -34.16979 -32.25358 -31.49344 -29.68330 -29.09024 -27.18998 -25.98852 -25.58783 -24.60380 -22.50479 -21.81231 -21.45860 -19.90917 -19.57785 -19.10945 -18.39901 -18.08730 -17.57141 -17.12166 -16.96751 -16.64806 -16.39808 -15.94812 -15.61835 -15.58369 -15.34532 -15.17096 -14.62924 -14.52890 -14.42736 -14.03812 -13.96426 -13.81535 -13.59023 -13.47616 -12.77178 -12.62913 -12.43623 -12.32406 -12.01147 -11.86608 -11.71499 -11.58748 -11.50981 -11.45579 -11.13973 -10.93525 -10.54744 -10.27646 -9.79177 -9.06176 -8.33589 -5.34062 -0.91655 0.48312 1.34225 1.50460 1.59335 1.66765 1.78862 1.83123 2.51043 2.61385 2.76932 3.02402 3.21331 3.25545 3.46683 3.57579 3.64842 3.76143 3.88865 3.96935 4.06454 4.25583 4.27468 4.35278 4.44577 4.46441 4.49389 4.64993 4.78670 4.82161 4.83517 4.97338 5.10842 5.12263 5.16616 5.25553 5.34729 5.63881 6.21086 6.29288 6.51028 6.56864 6.78186 6.87358 6.92208 7.67721 8.23439 8.99533 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017464 B = 0.002626 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.901202 B =10658.838087 C =11632.384753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.516 5.516 3 C 0.400 3.600 4 N -0.545 5.545 5 C 0.144 3.856 6 C 0.564 3.436 7 O -0.559 6.559 8 N -0.690 5.690 9 C 0.143 3.857 10 C -0.087 4.087 11 H 0.095 0.905 12 C 0.141 3.859 13 N -0.624 5.624 14 C -0.344 4.344 15 H 0.065 0.935 16 C -0.078 4.078 17 N -0.949 5.949 18 Si 1.119 2.881 19 H -0.273 1.273 20 H -0.291 1.291 21 H -0.288 1.288 22 C 0.124 3.876 23 C 0.108 3.892 24 H 0.080 0.920 25 O -0.565 6.565 26 C -0.239 4.239 27 C 0.514 3.486 28 O -0.568 6.568 29 H 0.096 0.904 30 H 0.142 0.858 31 H 0.079 0.921 32 H 0.274 0.726 33 H 0.421 0.579 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.035 0.965 37 H 0.032 0.968 38 H 0.257 0.743 39 H 0.011 0.989 40 H 0.027 0.973 41 H 0.396 0.604 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.872 -9.610 -6.085 22.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.231 5.231 3 C 0.117 3.883 4 N -0.269 5.269 5 C 0.021 3.979 6 C 0.349 3.651 7 O -0.438 6.438 8 N -0.341 5.341 9 C 0.019 3.981 10 C -0.106 4.106 11 H 0.113 0.887 12 C 0.016 3.984 13 N -0.353 5.353 14 C -0.473 4.473 15 H 0.083 0.917 16 C -0.274 4.274 17 N -0.593 5.593 18 Si 0.944 3.056 19 H -0.198 1.198 20 H -0.218 1.218 21 H -0.215 1.215 22 C -0.002 4.002 23 C 0.048 3.952 24 H 0.097 0.903 25 O -0.372 6.372 26 C -0.266 4.266 27 C 0.313 3.687 28 O -0.449 6.449 29 H 0.114 0.886 30 H 0.160 0.840 31 H 0.098 0.902 32 H 0.289 0.711 33 H 0.259 0.741 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.068 0.932 39 H 0.029 0.971 40 H 0.046 0.954 41 H 0.246 0.754 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -17.835 -9.397 -5.344 20.855 hybrid contribution -0.756 -1.199 -0.663 1.565 sum -18.591 -10.596 -6.007 22.225 Atomic orbital electron populations 1.22637 0.73337 1.07175 1.05974 1.46795 1.12643 1.07251 1.56435 1.26155 0.88089 0.91063 0.82982 1.68331 1.05934 1.28275 1.24349 1.21118 0.93615 0.89826 0.93337 1.18120 0.86394 0.83679 0.76920 1.90788 1.65689 1.36071 1.51238 1.45767 1.07823 1.08588 1.71946 1.21287 0.79169 0.94878 1.02775 1.22216 0.94716 0.95187 0.98479 0.88692 1.21502 0.91071 0.92242 0.93571 1.44668 1.17127 1.49599 1.23872 1.20078 1.20247 1.13011 0.93921 0.91669 1.27096 0.98748 0.94210 1.07359 1.70845 1.47674 1.41127 0.99614 0.82808 0.76080 0.75539 0.71201 1.19753 1.21770 1.21488 1.22120 0.92305 0.95147 0.90624 1.22814 0.93642 0.95464 0.83327 0.90263 1.86386 1.28466 1.96575 1.25772 1.23312 0.93649 1.00201 1.09445 1.17219 0.88447 0.84071 0.78937 1.90931 1.70932 1.29869 1.53154 0.88575 0.84028 0.90222 0.71113 0.74082 0.90170 0.91309 0.94727 0.94989 0.93176 0.97080 0.95427 0.75354 0.83040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.14 10.39 127.77 1.33 1.47 16 2 N -0.52 -5.69 2.97 -678.25 -2.01 -7.70 16 3 C 0.40 2.87 11.45 180.36 2.07 4.93 16 4 N -0.54 -8.66 9.64 -188.15 -1.81 -10.47 16 5 C 0.14 3.27 6.77 41.45 0.28 3.55 16 6 C 0.56 15.62 7.83 87.00 0.68 16.30 16 7 O -0.56 -19.14 16.37 -3.61 -0.06 -19.20 16 8 N -0.69 -17.41 5.39 -465.29 -2.51 -19.92 16 9 C 0.14 3.94 5.01 86.38 0.43 4.37 16 10 C -0.09 -2.73 2.74 -9.61 -0.03 -2.75 16 11 H 0.09 2.93 8.14 -2.39 -0.02 2.92 16 12 C 0.14 5.41 6.52 86.73 0.57 5.98 16 13 N -0.62 -30.82 3.33 -691.57 -2.30 -33.12 16 14 C -0.34 -19.11 10.05 84.03 0.84 -18.26 16 15 H 0.07 3.58 7.96 -2.91 -0.02 3.56 16 16 C -0.08 -4.43 5.09 84.86 0.43 -4.00 16 17 N -0.95 -57.45 12.82 21.65 0.28 -57.18 16 18 Si 1.12 50.45 30.00 68.60 2.06 52.50 16 19 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 20 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 22 C 0.12 5.66 4.96 86.93 0.43 6.09 16 23 C 0.11 3.68 3.89 32.06 0.12 3.81 16 24 H 0.08 2.54 8.05 -2.39 -0.02 2.52 16 25 O -0.56 -16.92 13.47 -148.98 -2.01 -18.93 16 26 C -0.24 -5.80 9.67 23.03 0.22 -5.58 16 27 C 0.51 11.33 7.47 85.04 0.63 11.97 16 28 O -0.57 -16.49 16.77 -5.03 -0.08 -16.58 16 29 H 0.10 0.11 8.14 -2.38 -0.02 0.10 16 30 H 0.14 -0.89 8.01 -2.39 -0.02 -0.91 16 31 H 0.08 0.60 7.44 -2.39 -0.02 0.58 16 32 H 0.27 -1.56 8.01 -2.91 -0.02 -1.59 16 33 H 0.42 9.39 7.69 -92.70 -0.71 8.68 16 34 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.07 2.01 8.06 -2.39 -0.02 1.99 16 36 H 0.03 1.32 7.77 -2.39 -0.02 1.30 16 37 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.26 15.77 5.83 -92.71 -0.54 15.23 16 39 H 0.01 0.57 6.84 -2.39 -0.02 0.56 16 40 H 0.03 1.38 7.73 -2.38 -0.02 1.36 16 41 H 0.40 8.75 9.12 -74.06 -0.68 8.07 16 42 H 0.15 4.11 7.68 -2.91 -0.02 4.08 16 Total: -1.00 -85.23 356.68 -0.52 -85.75 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -0.08 Total: 16.96 kcal Atomic # 6 Polarization: 19.86 SS G_CDS: 8.02 Total: 27.87 kcal Atomic # 7 Polarization: -120.03 SS G_CDS: -8.36 Total: -128.39 kcal Atomic # 8 Polarization: -52.55 SS G_CDS: -2.15 Total: -54.70 kcal Atomic # 14 Polarization: 50.45 SS G_CDS: 2.06 Total: 52.50 kcal Total: -85.23 -0.52 -85.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958148888.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.684 kcal (2) G-P(sol) polarization free energy of solvation -85.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds