Wall clock time and date at job start Tue Mar 31 2020 05:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34763 * 124.17984 * 2 1 4 4 O 1.21239 * 127.15751 * 0.06471 * 3 2 1 5 5 C 1.51576 * 105.68839 * 179.81496 * 3 2 1 6 6 N 1.47311 * 103.59211 * 0.32981 * 5 3 2 7 7 C 1.46508 * 126.69025 * 179.97438 * 6 5 3 8 8 C 1.50700 * 109.47084 * 269.71415 * 7 6 5 9 9 O 1.21279 * 120.00256 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00099 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99957 * 179.97438 * 10 8 7 12 12 H 1.08997 * 115.51709 * 350.57838 * 11 10 8 13 13 C 1.53001 * 117.43892 * 205.16208 * 11 10 8 14 14 H 1.08997 * 119.54497 * 5.76277 * 13 11 10 15 15 C 1.54389 * 118.12061 * 160.84954 * 13 11 10 16 16 N 1.48154 * 104.61566 * 87.19696 * 15 13 11 17 17 C 1.36930 * 127.84176 * 140.41514 * 16 15 13 18 18 H 1.07997 * 120.00389 * 195.57186 * 17 16 15 19 19 C 1.38816 * 119.99877 * 15.56987 * 17 16 15 20 20 N 1.31621 * 120.00039 * 9.09896 * 19 17 16 21 21 Si 1.86801 * 119.99828 * 189.10196 * 19 17 16 22 22 H 1.48495 * 109.47406 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.46987 * 120.00321 * 21 19 17 24 24 H 1.48498 * 109.47009 * 240.00029 * 21 19 17 25 25 C 1.48152 * 104.32043 * 320.41061 * 16 15 13 26 26 C 1.53005 * 117.40570 * 135.93992 * 11 10 8 27 27 H 1.09001 * 119.53547 * 355.89159 * 26 11 10 28 28 C 1.33790 * 124.17639 * 180.02562 * 2 1 3 29 29 O 1.21539 * 123.77660 * 359.96717 * 28 2 1 30 30 H 1.08995 * 109.47476 * 269.96244 * 1 2 3 31 31 H 1.09001 * 109.46984 * 29.96738 * 1 2 3 32 32 H 1.08998 * 109.46871 * 149.96110 * 1 2 3 33 33 H 1.09002 * 110.69522 * 241.75949 * 5 3 2 34 34 H 1.09004 * 110.50999 * 118.81724 * 5 3 2 35 35 H 1.08994 * 109.46857 * 149.70955 * 7 6 5 36 36 H 1.08999 * 109.46715 * 29.71040 * 7 6 5 37 37 H 0.97001 * 119.99582 * 359.97438 * 10 8 7 38 38 H 1.08999 * 110.40865 * 205.97626 * 15 13 11 39 39 H 1.08994 * 110.40946 * 328.40943 * 15 13 11 40 40 H 0.96999 * 119.99726 * 180.02562 * 20 19 17 41 41 H 1.08999 * 110.40542 * 158.37008 * 25 16 15 42 42 H 1.09000 * 110.40902 * 280.68627 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2221 1.1149 0.0000 4 8 1.8341 2.2635 0.0011 5 6 3.6596 0.6341 0.0047 6 7 3.5338 -0.8336 -0.0012 7 6 4.6296 -1.8061 -0.0003 8 6 5.0063 -2.1396 -1.4209 9 8 4.4173 -1.6169 -2.3432 10 7 5.9972 -3.0195 -1.6664 11 6 6.3630 -3.3441 -3.0473 12 1 5.6895 -2.9611 -3.8139 13 6 7.0219 -4.7014 -3.3017 14 1 7.1131 -5.4163 -2.4839 15 6 7.0073 -5.2590 -4.7413 16 7 8.2146 -4.6826 -5.3777 17 6 9.0827 -5.2954 -6.2414 18 1 10.0502 -4.8568 -6.4363 19 6 8.7193 -6.4804 -6.8663 20 7 7.4827 -6.9215 -6.7725 21 14 9.9852 -7.4490 -7.8404 22 1 11.2915 -6.7444 -7.7927 23 1 10.1314 -8.8045 -7.2517 24 1 9.5387 -7.5678 -9.2517 25 6 8.2694 -3.2926 -4.8679 26 6 7.8541 -3.4049 -3.3851 27 1 8.5887 -3.1436 -2.6235 28 6 2.2165 -1.1069 -0.0005 29 8 1.7603 -2.2334 -0.0004 30 1 -0.3634 -0.0007 1.0276 31 1 -0.3633 0.8903 -0.5133 32 1 -0.3633 -0.8896 -0.5144 33 1 4.1755 0.9712 0.9038 34 1 4.1802 0.9781 -0.8890 35 1 4.3102 -2.7128 0.5133 36 1 5.4917 -1.3815 0.5141 37 1 6.4681 -3.4379 -0.9287 38 1 7.0675 -6.3473 -4.7280 39 1 6.1090 -4.9336 -5.2658 40 1 7.2289 -7.7498 -7.2089 41 1 9.2819 -2.8974 -4.9500 42 1 7.5697 -2.6597 -5.4136 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962285376.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:53 Heat of formation + Delta-G solvation = 4.602045 kcal Electronic energy + Delta-G solvation = -26621.840008 eV Core-core repulsion = 22605.697542 eV Total energy + Delta-G solvation = -4016.142466 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.63580 -39.95878 -38.94835 -38.35149 -36.44120 -35.50186 -34.54914 -32.78288 -30.94457 -30.04430 -27.52899 -27.20663 -27.03203 -25.53598 -23.06170 -22.07535 -20.95514 -20.57212 -20.09484 -19.34615 -17.97949 -17.86591 -17.07261 -16.93899 -16.83575 -16.34779 -16.01048 -15.26275 -14.99903 -14.71421 -14.58828 -14.51785 -14.31684 -13.81798 -13.59094 -13.30181 -13.07469 -12.95425 -12.79767 -12.60376 -12.26793 -11.57995 -11.54858 -11.25954 -11.02852 -10.87344 -10.61348 -10.45507 -10.36805 -10.25765 -10.15820 -10.14061 -9.77486 -9.36508 -9.18404 -8.77790 -8.41959 -6.90116 -5.82527 -3.17093 1.26939 1.61479 2.41324 2.48271 2.64803 3.10707 3.36257 3.42106 3.44713 3.64864 4.18395 4.29243 4.42459 4.46744 4.60438 4.71822 4.80301 4.85911 4.95205 5.10080 5.15229 5.26958 5.30974 5.33891 5.39741 5.52324 5.78686 5.84484 5.89294 6.07229 6.17264 6.47437 6.65184 6.71192 6.71704 6.84899 6.97065 7.31059 7.41753 7.50321 7.68788 7.72173 8.10768 8.17265 9.07879 9.70658 10.47218 11.31849 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.032312 B = 0.002183 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.341755 B =12821.920806 C =13054.048943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.579 5.579 3 C 0.526 3.474 4 O -0.473 6.473 5 C 0.065 3.935 6 N -0.610 5.610 7 C 0.135 3.865 8 C 0.493 3.507 9 O -0.527 6.527 10 N -0.694 5.694 11 C 0.095 3.905 12 H 0.131 0.869 13 C -0.178 4.178 14 H 0.104 0.896 15 C 0.184 3.816 16 N -0.593 5.593 17 C -0.227 4.227 18 H 0.078 0.922 19 C -0.006 4.006 20 N -0.914 5.914 21 Si 0.913 3.087 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.155 3.845 26 C -0.181 4.181 27 H 0.103 0.897 28 C 0.706 3.294 29 O -0.536 6.536 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.400 0.600 38 H 0.092 0.908 39 H 0.026 0.974 40 H 0.254 0.746 41 H 0.052 0.948 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.494 13.640 19.863 25.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.325 5.325 3 C 0.314 3.686 4 O -0.343 6.343 5 C -0.061 4.061 6 N -0.348 5.348 7 C 0.010 3.990 8 C 0.277 3.723 9 O -0.403 6.403 10 N -0.343 5.343 11 C -0.011 4.011 12 H 0.148 0.852 13 C -0.199 4.199 14 H 0.122 0.878 15 C 0.058 3.942 16 N -0.316 5.316 17 C -0.356 4.356 18 H 0.096 0.904 19 C -0.203 4.203 20 N -0.560 5.560 21 Si 0.743 3.257 22 H -0.204 1.204 23 H -0.216 1.216 24 H -0.217 1.217 25 C 0.028 3.972 26 C -0.202 4.202 27 H 0.121 0.879 28 C 0.408 3.592 29 O -0.408 6.408 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.234 0.766 38 H 0.110 0.890 39 H 0.044 0.956 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -8.348 13.741 19.003 24.892 hybrid contribution 0.905 -0.811 -0.119 1.221 sum -7.443 12.931 18.884 24.067 Atomic orbital electron populations 1.21845 0.74855 1.04951 1.03609 1.46224 1.09705 1.08030 1.68508 1.20831 0.88829 0.84705 0.74231 1.90824 1.79160 1.17884 1.46398 1.22548 0.95996 0.80652 1.06896 1.46921 1.04747 1.06200 1.76892 1.21145 0.89220 0.93691 0.94969 1.21052 0.79930 0.79491 0.91819 1.90741 1.52007 1.51684 1.45829 1.45324 1.36389 1.44256 1.08335 1.21864 0.95117 1.00742 0.83378 0.85177 1.24651 1.03147 0.89670 1.02467 0.87790 1.21076 0.88985 0.99876 0.84277 1.45187 1.28632 1.06250 1.51560 1.19033 0.94689 1.04602 1.17228 0.90445 1.24919 0.96338 0.99628 0.99427 1.69906 1.15748 1.22926 1.47468 0.86032 0.80368 0.79850 0.79405 1.20355 1.21605 1.21659 1.21118 0.98397 0.88776 0.88887 1.24366 0.92459 1.03332 1.00082 0.87878 1.15747 0.81686 0.84251 0.77489 1.91004 1.75043 1.20299 1.54488 0.90868 0.89336 0.89072 0.85674 0.85539 0.86003 0.86152 0.76590 0.89003 0.95633 0.93533 0.92980 0.95515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 10.73 59.85 0.64 1.30 16 2 N -0.58 -5.67 3.00 -128.17 -0.39 -6.06 16 3 C 0.53 4.82 8.31 -10.56 -0.09 4.73 16 4 O -0.47 -5.40 17.76 5.59 0.10 -5.30 16 5 C 0.06 0.42 7.66 -4.32 -0.03 0.39 16 6 N -0.61 -5.42 2.51 -181.39 -0.45 -5.88 16 7 C 0.14 0.96 6.63 -5.19 -0.03 0.93 16 8 C 0.49 5.88 7.90 -10.99 -0.09 5.79 16 9 O -0.53 -8.83 16.00 5.56 0.09 -8.75 16 10 N -0.69 -7.96 5.56 -53.81 -0.30 -8.26 16 11 C 0.09 1.51 5.98 -67.93 -0.41 1.10 16 12 H 0.13 2.44 7.40 -51.93 -0.38 2.06 16 13 C -0.18 -3.21 7.06 -89.22 -0.63 -3.84 16 14 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 15 C 0.18 4.37 5.70 -2.40 -0.01 4.35 16 16 N -0.59 -14.99 3.38 -168.85 -0.57 -15.56 16 17 C -0.23 -6.26 10.35 -15.06 -0.16 -6.42 16 18 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 19 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 20 N -0.91 -26.66 10.86 55.49 0.60 -26.06 16 21 Si 0.91 21.73 29.56 -169.99 -5.03 16.70 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 C 0.15 3.20 7.04 -2.41 -0.02 3.18 16 26 C -0.18 -3.04 7.06 -89.22 -0.63 -3.67 16 27 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 28 C 0.71 8.21 8.31 -88.02 -0.73 7.47 16 29 O -0.54 -8.03 17.15 5.33 0.09 -7.94 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.57 8.00 -51.93 -0.42 0.16 16 32 H 0.09 0.71 7.86 -51.93 -0.41 0.30 16 33 H 0.13 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.13 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.12 0.76 8.03 -51.93 -0.42 0.34 16 36 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.40 3.17 8.83 -40.82 -0.36 2.81 16 38 H 0.09 2.43 6.51 -51.93 -0.34 2.09 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 361.29 15.07 5.44 5.44 Total: -1.00 -37.53 361.29 -8.36 -45.89 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -5.67 Total: 0.71 kcal Atomic # 6 Polarization: 17.33 SS G_CDS: -2.28 Total: 15.05 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: -1.11 Total: -61.81 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: 0.28 Total: -21.99 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -37.53 -8.36 -45.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962285376.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.495 kcal (2) G-P(sol) polarization free energy of solvation -37.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds