Wall clock time and date at job start Tue Mar 31 2020 05:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34763 * 124.17984 * 2 1 4 4 O 1.21239 * 127.15751 * 0.06471 * 3 2 1 5 5 C 1.51576 * 105.68839 * 179.81496 * 3 2 1 6 6 N 1.47311 * 103.59211 * 0.32981 * 5 3 2 7 7 C 1.46508 * 126.69025 * 179.97438 * 6 5 3 8 8 C 1.50700 * 109.47084 * 269.71415 * 7 6 5 9 9 O 1.21279 * 120.00256 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00099 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99957 * 179.97438 * 10 8 7 12 12 H 1.08997 * 115.51709 * 350.57838 * 11 10 8 13 13 C 1.53001 * 117.43892 * 205.16208 * 11 10 8 14 14 H 1.08997 * 119.54497 * 5.76277 * 13 11 10 15 15 C 1.54389 * 118.12061 * 160.84954 * 13 11 10 16 16 N 1.48154 * 104.61566 * 87.19696 * 15 13 11 17 17 C 1.36930 * 127.84176 * 140.41514 * 16 15 13 18 18 H 1.07997 * 120.00389 * 195.57186 * 17 16 15 19 19 C 1.38816 * 119.99877 * 15.56987 * 17 16 15 20 20 N 1.31621 * 120.00039 * 9.09896 * 19 17 16 21 21 Si 1.86801 * 119.99828 * 189.10196 * 19 17 16 22 22 H 1.48495 * 109.47406 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.46987 * 120.00321 * 21 19 17 24 24 H 1.48498 * 109.47009 * 240.00029 * 21 19 17 25 25 C 1.48152 * 104.32043 * 320.41061 * 16 15 13 26 26 C 1.53005 * 117.40570 * 135.93992 * 11 10 8 27 27 H 1.09001 * 119.53547 * 355.89159 * 26 11 10 28 28 C 1.33790 * 124.17639 * 180.02562 * 2 1 3 29 29 O 1.21539 * 123.77660 * 359.96717 * 28 2 1 30 30 H 1.08995 * 109.47476 * 269.96244 * 1 2 3 31 31 H 1.09001 * 109.46984 * 29.96738 * 1 2 3 32 32 H 1.08998 * 109.46871 * 149.96110 * 1 2 3 33 33 H 1.09002 * 110.69522 * 241.75949 * 5 3 2 34 34 H 1.09004 * 110.50999 * 118.81724 * 5 3 2 35 35 H 1.08994 * 109.46857 * 149.70955 * 7 6 5 36 36 H 1.08999 * 109.46715 * 29.71040 * 7 6 5 37 37 H 0.97001 * 119.99582 * 359.97438 * 10 8 7 38 38 H 1.08999 * 110.40865 * 205.97626 * 15 13 11 39 39 H 1.08994 * 110.40946 * 328.40943 * 15 13 11 40 40 H 0.96999 * 119.99726 * 180.02562 * 20 19 17 41 41 H 1.08999 * 110.40542 * 158.37008 * 25 16 15 42 42 H 1.09000 * 110.40902 * 280.68627 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2221 1.1149 0.0000 4 8 1.8341 2.2635 0.0011 5 6 3.6596 0.6341 0.0047 6 7 3.5338 -0.8336 -0.0012 7 6 4.6296 -1.8061 -0.0003 8 6 5.0063 -2.1396 -1.4209 9 8 4.4173 -1.6169 -2.3432 10 7 5.9972 -3.0195 -1.6664 11 6 6.3630 -3.3441 -3.0473 12 1 5.6895 -2.9611 -3.8139 13 6 7.0219 -4.7014 -3.3017 14 1 7.1131 -5.4163 -2.4839 15 6 7.0073 -5.2590 -4.7413 16 7 8.2146 -4.6826 -5.3777 17 6 9.0827 -5.2954 -6.2414 18 1 10.0502 -4.8568 -6.4363 19 6 8.7193 -6.4804 -6.8663 20 7 7.4827 -6.9215 -6.7725 21 14 9.9852 -7.4490 -7.8404 22 1 11.2915 -6.7444 -7.7927 23 1 10.1314 -8.8045 -7.2517 24 1 9.5387 -7.5678 -9.2517 25 6 8.2694 -3.2926 -4.8679 26 6 7.8541 -3.4049 -3.3851 27 1 8.5887 -3.1436 -2.6235 28 6 2.2165 -1.1069 -0.0005 29 8 1.7603 -2.2334 -0.0004 30 1 -0.3634 -0.0007 1.0276 31 1 -0.3633 0.8903 -0.5133 32 1 -0.3633 -0.8896 -0.5144 33 1 4.1755 0.9712 0.9038 34 1 4.1802 0.9781 -0.8890 35 1 4.3102 -2.7128 0.5133 36 1 5.4917 -1.3815 0.5141 37 1 6.4681 -3.4379 -0.9287 38 1 7.0675 -6.3473 -4.7280 39 1 6.1090 -4.9336 -5.2658 40 1 7.2289 -7.7498 -7.2089 41 1 9.2819 -2.8974 -4.9500 42 1 7.5697 -2.6597 -5.4136 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962285376.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:52 Heat of formation + Delta-G solvation = -23.828896 kcal Electronic energy + Delta-G solvation = -26623.072866 eV Core-core repulsion = 22605.697542 eV Total energy + Delta-G solvation = -4017.375324 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.36547 -41.10690 -39.96154 -39.55293 -37.29249 -36.28892 -35.99792 -34.37376 -32.33910 -31.12842 -28.93093 -28.19022 -28.00902 -27.17258 -24.04100 -23.34120 -22.02953 -21.91138 -21.09761 -20.87407 -18.91809 -18.74337 -18.61216 -17.81306 -17.74436 -17.50241 -16.79241 -16.75556 -16.10406 -15.87666 -15.56127 -15.43644 -15.23443 -15.00918 -14.90716 -14.64758 -14.42931 -13.76166 -13.68885 -13.57017 -13.40138 -13.33557 -13.04062 -12.88384 -12.75270 -12.11523 -12.08096 -12.01001 -11.87843 -11.66086 -11.42782 -11.33164 -10.93311 -10.86694 -10.70952 -10.04301 -9.70276 -8.93606 -7.92855 -5.29947 0.54108 0.94687 1.46855 1.47317 1.50444 1.58770 1.74295 1.91222 2.19902 2.48217 2.85908 3.01757 3.27935 3.56415 3.68020 3.70652 3.83937 3.95110 4.14533 4.19176 4.25802 4.36485 4.38745 4.39922 4.40094 4.47863 4.53248 4.69438 4.78528 4.85347 4.90848 4.99491 5.22373 5.29425 5.41692 5.44816 5.55172 5.63919 5.98298 6.15600 6.27534 6.52660 6.92318 6.99037 7.23180 7.66371 8.44509 9.21252 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.032312 B = 0.002183 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.341755 B =12821.920806 C =13054.048943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.584 5.584 3 C 0.524 3.476 4 O -0.500 6.500 5 C 0.071 3.929 6 N -0.606 5.606 7 C 0.141 3.859 8 C 0.490 3.510 9 O -0.582 6.582 10 N -0.677 5.677 11 C 0.117 3.883 12 H 0.096 0.904 13 C -0.182 4.182 14 H 0.130 0.870 15 C 0.186 3.814 16 N -0.617 5.617 17 C -0.239 4.239 18 H 0.085 0.915 19 C -0.066 4.066 20 N -0.950 5.950 21 Si 0.982 3.018 22 H -0.262 1.262 23 H -0.289 1.289 24 H -0.294 1.294 25 C 0.146 3.854 26 C -0.157 4.157 27 H 0.144 0.856 28 C 0.697 3.303 29 O -0.579 6.579 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.175 0.825 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.182 0.818 37 H 0.423 0.577 38 H 0.058 0.942 39 H -0.010 1.010 40 H 0.249 0.751 41 H 0.066 0.934 42 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.359 14.903 22.778 27.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.329 5.329 3 C 0.314 3.686 4 O -0.372 6.372 5 C -0.053 4.053 6 N -0.343 5.343 7 C 0.017 3.983 8 C 0.276 3.724 9 O -0.461 6.461 10 N -0.328 5.328 11 C 0.009 3.991 12 H 0.114 0.886 13 C -0.203 4.203 14 H 0.148 0.852 15 C 0.060 3.940 16 N -0.341 5.341 17 C -0.367 4.367 18 H 0.103 0.897 19 C -0.259 4.259 20 N -0.598 5.598 21 Si 0.810 3.190 22 H -0.186 1.186 23 H -0.216 1.216 24 H -0.222 1.222 25 C 0.020 3.980 26 C -0.178 4.178 27 H 0.161 0.839 28 C 0.400 3.600 29 O -0.456 6.456 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.101 0.899 33 H 0.192 0.808 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.199 0.801 37 H 0.262 0.738 38 H 0.076 0.924 39 H 0.007 0.993 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -6.171 15.046 21.981 27.342 hybrid contribution 0.167 -1.117 -1.077 1.560 sum -6.003 13.929 20.904 25.827 Atomic orbital electron populations 1.21988 0.74233 1.04847 1.04787 1.46388 1.10478 1.08032 1.68045 1.21290 0.90005 0.84067 0.73278 1.90813 1.79896 1.18750 1.47773 1.22799 0.94174 0.78931 1.09381 1.47137 1.04050 1.07622 1.75486 1.21485 0.90606 0.94729 0.91497 1.22050 0.78651 0.78199 0.93477 1.90738 1.53672 1.53646 1.48038 1.45092 1.36634 1.44281 1.06802 1.21300 0.94059 0.98336 0.85424 0.88564 1.24316 1.05540 0.90931 0.99467 0.85184 1.20797 0.87433 0.98040 0.87710 1.45507 1.28454 1.08365 1.51818 1.19448 0.95311 1.04748 1.17214 0.89749 1.25799 0.98200 1.00874 1.01033 1.70117 1.17747 1.23149 1.48776 0.84959 0.78561 0.78169 0.77291 1.18586 1.21608 1.22163 1.21280 0.99043 0.86406 0.91248 1.24262 0.93659 1.01603 0.98292 0.83866 1.16036 0.82786 0.83928 0.77285 1.90967 1.76026 1.21913 1.56669 0.89126 0.88658 0.89925 0.80811 0.84985 0.84551 0.80104 0.73819 0.92371 0.99257 0.94146 0.91600 0.96784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.22 10.73 127.77 1.37 2.59 16 2 N -0.58 -10.97 3.00 -796.67 -2.39 -13.37 16 3 C 0.52 8.74 8.31 87.94 0.73 9.47 16 4 O -0.50 -10.89 17.76 -2.90 -0.05 -10.95 16 5 C 0.07 0.67 7.66 85.76 0.66 1.33 16 6 N -0.61 -8.90 2.51 -846.23 -2.12 -11.02 16 7 C 0.14 1.37 6.63 85.63 0.57 1.94 16 8 C 0.49 10.30 7.90 87.66 0.69 10.99 16 9 O -0.58 -19.03 16.00 -3.03 -0.05 -19.07 16 10 N -0.68 -13.23 5.56 -442.53 -2.46 -15.69 16 11 C 0.12 3.54 5.98 44.99 0.27 3.81 16 12 H 0.10 3.70 7.40 -2.39 -0.02 3.68 16 13 C -0.18 -6.37 7.06 -9.89 -0.07 -6.44 16 14 H 0.13 3.91 8.14 -2.39 -0.02 3.89 16 15 C 0.19 9.22 5.70 86.53 0.49 9.71 16 16 N -0.62 -31.82 3.38 -688.13 -2.33 -34.15 16 17 C -0.24 -13.30 10.35 84.04 0.87 -12.43 16 18 H 0.08 4.46 7.84 -2.91 -0.02 4.44 16 19 C -0.07 -3.73 5.40 84.86 0.46 -3.27 16 20 N -0.95 -57.70 10.86 21.65 0.24 -57.47 16 21 Si 0.98 45.31 29.56 68.60 2.03 47.34 16 22 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 23 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 24 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 25 C 0.15 5.95 7.04 86.53 0.61 6.56 16 26 C -0.16 -4.89 7.06 -9.89 -0.07 -4.96 16 27 H 0.14 3.41 8.14 -2.39 -0.02 3.39 16 28 C 0.70 15.39 8.31 179.44 1.49 16.88 16 29 O -0.58 -17.28 17.15 -3.84 -0.07 -17.34 16 30 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 1.24 8.00 -2.39 -0.02 1.22 16 32 H 0.08 1.35 7.86 -2.39 -0.02 1.33 16 33 H 0.17 0.01 8.14 -2.39 -0.02 -0.01 16 34 H 0.13 1.24 8.14 -2.38 -0.02 1.23 16 35 H 0.14 1.09 8.03 -2.39 -0.02 1.07 16 36 H 0.18 -0.35 8.14 -2.39 -0.02 -0.37 16 37 H 0.42 4.56 8.83 -92.71 -0.82 3.74 16 38 H 0.06 3.24 6.51 -2.39 -0.02 3.22 16 39 H -0.01 -0.58 8.14 -2.39 -0.02 -0.59 16 40 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 41 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -88.55 361.29 1.11 -87.44 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 0.24 Total: 8.10 kcal Atomic # 6 Polarization: 28.10 SS G_CDS: 8.07 Total: 36.17 kcal Atomic # 7 Polarization: -122.63 SS G_CDS: -9.07 Total: -131.69 kcal Atomic # 8 Polarization: -47.20 SS G_CDS: -0.17 Total: -47.36 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -88.55 1.11 -87.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962285376.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.615 kcal (2) G-P(sol) polarization free energy of solvation -88.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds