Wall clock time and date at job start Tue Mar 31 2020 05:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34777 * 119.89256 * 2 1 4 4 N 1.30435 * 121.82094 * 179.97438 * 3 2 1 5 5 C 1.34314 * 121.47901 * 0.02562 * 4 3 2 6 6 C 1.48564 * 120.20738 * 180.02562 * 5 4 3 7 7 O 1.21469 * 119.99722 * 180.02562 * 6 5 4 8 8 N 1.34770 * 119.99936 * 359.97438 * 6 5 4 9 9 C 1.46501 * 119.99856 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47377 * 180.02562 * 9 8 6 11 11 H 1.08999 * 109.51331 * 304.90036 * 10 9 8 12 12 C 1.52874 * 109.58764 * 184.88093 * 10 9 8 13 13 N 1.47146 * 108.61038 * 187.92443 * 12 10 9 14 14 C 1.36938 * 120.98166 * 230.49961 * 13 12 10 15 15 H 1.08004 * 120.00362 * 26.46603 * 14 13 12 16 16 C 1.38811 * 120.00369 * 206.46273 * 14 13 12 17 17 N 1.31624 * 119.99894 * 16.40694 * 16 14 13 18 18 Si 1.86793 * 120.00437 * 196.13282 * 16 14 13 19 19 H 1.48501 * 109.47251 * 90.00080 * 18 16 14 20 20 H 1.48504 * 109.47315 * 209.99870 * 18 16 14 21 21 H 1.48503 * 109.47374 * 330.00111 * 18 16 14 22 22 C 1.47152 * 118.03553 * 50.22601 * 13 12 10 23 23 C 1.53291 * 108.38463 * 309.71610 * 22 13 12 24 24 O 1.42958 * 109.22268 * 52.30270 * 23 22 13 25 25 C 1.37924 * 119.58233 * 0.27063 * 5 4 3 26 26 C 1.34989 * 119.89304 * 180.02562 * 2 1 3 27 27 O 1.21909 * 120.71422 * 359.97438 * 26 2 1 28 28 H 1.08995 * 109.47328 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47127 * 120.00334 * 1 2 3 30 30 H 1.09004 * 109.46772 * 239.99763 * 1 2 3 31 31 H 1.07995 * 119.08962 * 0.02562 * 3 2 1 32 32 H 0.96992 * 120.00266 * 0.02562 * 8 6 5 33 33 H 1.09007 * 109.47306 * 60.00172 * 9 8 6 34 34 H 1.09002 * 109.47255 * 300.00314 * 9 8 6 35 35 H 1.09004 * 109.61801 * 68.10492 * 12 10 9 36 36 H 1.09002 * 109.52448 * 307.69194 * 12 10 9 37 37 H 0.97001 * 120.00132 * 179.97438 * 17 16 14 38 38 H 1.08995 * 109.68009 * 69.44637 * 22 13 12 39 39 H 1.08998 * 109.67837 * 189.95158 * 22 13 12 40 40 H 1.09002 * 109.50962 * 172.22809 * 23 22 13 41 41 H 1.08996 * 109.51452 * 292.32644 * 23 22 13 42 42 H 1.08006 * 120.83467 * 179.70584 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1367 1.1685 0.0000 4 7 3.4403 1.2124 0.0005 5 6 4.1798 0.0911 0.0005 6 6 5.6632 0.1741 0.0017 7 8 6.3282 -0.8424 0.0012 8 7 6.2708 1.3770 0.0022 9 6 7.7335 1.4588 0.0027 10 6 8.1623 2.9275 0.0039 11 1 7.7004 3.4422 -0.8386 12 6 9.6835 3.0173 -0.1181 13 7 10.0882 4.4186 0.0763 14 6 10.9169 5.0434 -0.8170 15 1 10.9481 4.7153 -1.8455 16 6 11.7170 6.0986 -0.4008 17 7 11.9313 6.2955 0.8829 18 14 12.4958 7.2347 -1.6626 19 1 11.5772 8.3673 -1.9426 20 1 13.7798 7.7585 -1.1313 21 1 12.7496 6.4814 -2.9170 22 6 9.5711 5.1306 1.2557 23 6 8.0510 4.9395 1.3079 24 8 7.7490 3.5446 1.2254 25 6 3.5535 -1.1377 -0.0057 26 6 2.1378 -1.1703 -0.0005 27 8 1.5395 -2.2325 -0.0005 28 1 -0.3634 1.0276 0.0005 29 1 -0.3633 -0.5139 -0.8899 30 1 -0.3633 -0.5139 0.8900 31 1 1.5802 2.0940 0.0004 32 1 5.7397 2.1886 0.0021 33 1 8.1254 0.9662 -0.8873 34 1 8.1247 0.9658 0.8927 35 1 9.9919 2.6801 -1.1077 36 1 10.1477 2.3920 0.6445 37 1 12.4907 7.0327 1.1738 38 1 10.0238 4.7218 2.1590 39 1 9.8057 6.1921 1.1758 40 1 7.6656 5.3407 2.2452 41 1 7.5893 5.4629 0.4707 42 1 4.1283 -2.0520 -0.0105 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035403721.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:57 Heat of formation + Delta-G solvation = -37.712608 kcal Electronic energy + Delta-G solvation = -26631.624343 eV Core-core repulsion = 22613.646976 eV Total energy + Delta-G solvation = -4017.977367 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.19666 -39.80420 -38.51472 -37.93928 -35.68112 -35.02519 -34.32232 -31.63487 -31.43891 -30.74877 -28.82025 -27.53076 -25.92782 -24.99300 -24.28595 -23.18611 -21.88306 -20.98088 -19.78292 -18.93623 -18.20207 -17.52672 -16.91451 -16.90147 -16.19108 -16.09426 -15.88098 -15.04935 -15.00720 -14.87939 -14.43741 -14.37989 -13.86081 -13.77305 -13.66284 -13.35141 -13.34113 -13.23658 -13.05645 -12.74796 -12.40179 -11.60233 -11.14211 -11.00348 -10.89084 -10.87423 -10.74585 -10.67038 -10.42556 -10.27997 -10.14191 -10.00050 -9.68111 -9.11774 -9.08294 -8.93913 -8.57404 -6.78197 -5.86819 -3.31211 -0.10567 1.21914 1.91195 2.51396 2.89213 3.32592 3.37389 3.39579 3.41014 3.48255 3.99286 4.06797 4.21337 4.40060 4.44809 4.65677 4.76988 4.95024 5.03890 5.09962 5.27698 5.30600 5.45192 5.48892 5.73836 5.77899 5.81947 5.99302 6.02788 6.12533 6.25007 6.34700 6.42694 6.46234 6.72826 7.07662 7.10696 7.29660 7.48841 7.50515 7.68339 7.83112 8.05203 8.30860 9.08735 9.71193 10.28009 11.21343 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.029473 B = 0.002278 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.784491 B =12287.806487 C =12617.071626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.525 5.525 3 C 0.374 3.626 4 N -0.524 5.524 5 C 0.133 3.867 6 C 0.564 3.436 7 O -0.527 6.527 8 N -0.694 5.694 9 C 0.127 3.873 10 C 0.065 3.935 11 H 0.060 0.940 12 C 0.122 3.878 13 N -0.594 5.594 14 C -0.256 4.256 15 H 0.069 0.931 16 C 0.002 3.998 17 N -0.903 5.903 18 Si 0.906 3.094 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.278 1.278 22 C 0.139 3.861 23 C 0.040 3.960 24 O -0.389 6.389 25 C -0.213 4.213 26 C 0.517 3.483 27 O -0.527 6.527 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.211 0.789 32 H 0.415 0.585 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.030 0.970 37 H 0.255 0.745 38 H 0.029 0.971 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.041 0.959 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.280 -6.681 -1.297 24.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.244 5.244 3 C 0.089 3.911 4 N -0.247 5.247 5 C 0.012 3.988 6 C 0.348 3.652 7 O -0.403 6.403 8 N -0.344 5.344 9 C 0.004 3.996 10 C 0.005 3.995 11 H 0.078 0.922 12 C -0.006 4.006 13 N -0.318 5.318 14 C -0.385 4.385 15 H 0.087 0.913 16 C -0.196 4.196 17 N -0.547 5.547 18 Si 0.736 3.264 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.204 1.204 22 C 0.013 3.987 23 C -0.038 4.038 24 O -0.308 6.308 25 C -0.240 4.240 26 C 0.316 3.684 27 O -0.404 6.404 28 H 0.115 0.885 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.228 0.772 32 H 0.251 0.749 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.048 0.952 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.112 0.888 40 H 0.100 0.900 41 H 0.060 0.940 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -22.548 -7.437 -1.081 23.768 hybrid contribution -0.060 0.620 -0.694 0.933 sum -22.609 -6.817 -1.776 23.681 Atomic orbital electron populations 1.22234 0.76087 1.04712 1.05091 1.46739 1.10905 1.08240 1.58481 1.25004 0.89066 0.89888 0.87095 1.68301 1.04175 1.29740 1.22481 1.21473 0.94823 0.89047 0.93435 1.17788 0.85273 0.84258 0.77924 1.90813 1.64540 1.35009 1.49960 1.45815 1.08292 1.08296 1.71996 1.21550 0.78552 0.96243 1.03304 1.22715 0.97842 0.91059 0.87841 0.92217 1.21359 0.90700 0.88526 0.99991 1.44045 1.54649 1.06046 1.27017 1.19206 1.16098 1.13166 0.90001 0.91312 1.25063 0.97420 1.01208 0.95958 1.70033 1.40125 1.31353 1.13168 0.86230 0.78439 0.80983 0.80737 1.21376 1.21668 1.20363 1.21449 0.88018 0.99872 0.89330 1.23319 0.99392 0.80830 1.00228 1.87796 1.81438 1.23848 1.37738 1.23469 0.92824 1.00639 1.07049 1.17306 0.88682 0.83214 0.79220 1.90965 1.70375 1.28163 1.50848 0.88500 0.89581 0.89581 0.77235 0.74871 0.89681 0.90211 0.91716 0.95188 0.93480 0.95337 0.88794 0.90029 0.94046 0.81192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.17 10.13 59.85 0.61 0.78 16 2 N -0.53 -3.45 2.97 -128.43 -0.38 -3.83 16 3 C 0.37 1.96 11.48 -90.67 -1.04 0.92 16 4 N -0.52 -4.69 9.64 -10.83 -0.10 -4.79 16 5 C 0.13 1.54 6.77 -82.63 -0.56 0.98 16 6 C 0.56 7.90 7.83 -12.00 -0.09 7.80 16 7 O -0.53 -8.87 16.37 5.39 0.09 -8.78 16 8 N -0.69 -9.26 5.50 -61.02 -0.34 -9.60 16 9 C 0.13 1.86 5.34 -4.04 -0.02 1.84 16 10 C 0.07 1.10 2.80 -26.80 -0.07 1.03 16 11 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 12 C 0.12 2.47 6.00 -3.75 -0.02 2.44 16 13 N -0.59 -14.55 3.05 -172.09 -0.53 -15.08 16 14 C -0.26 -6.82 9.65 -15.06 -0.15 -6.97 16 15 H 0.07 1.79 7.88 -52.48 -0.41 1.38 16 16 C 0.00 0.06 4.95 -17.43 -0.09 -0.02 16 17 N -0.90 -25.64 11.15 55.49 0.62 -25.02 16 18 Si 0.91 21.15 29.58 -169.99 -5.03 16.12 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 C 0.14 3.24 5.44 -3.54 -0.02 3.22 16 23 C 0.04 0.75 6.98 37.31 0.26 1.01 16 24 O -0.39 -7.08 10.33 -35.23 -0.36 -7.45 16 25 C -0.21 -2.49 9.67 -38.41 -0.37 -2.86 16 26 C 0.52 5.66 7.47 -14.88 -0.11 5.55 16 27 O -0.53 -7.37 17.18 5.00 0.09 -7.28 16 28 H 0.10 -0.10 7.71 -51.93 -0.40 -0.51 16 29 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.21 0.00 7.79 -52.49 -0.41 -0.41 16 32 H 0.41 5.10 7.84 -40.82 -0.32 4.78 16 33 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 1.24 7.96 -51.93 -0.41 0.83 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.09 2.40 6.16 -51.93 -0.32 2.08 16 40 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.17 2.08 7.68 -52.48 -0.40 1.68 16 LS Contribution 356.20 15.07 5.37 5.37 Total: -1.00 -35.30 356.20 -7.88 -43.18 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.62 Total: 1.43 kcal Atomic # 6 Polarization: 17.41 SS G_CDS: -1.68 Total: 15.73 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: -0.73 Total: -58.32 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.19 Total: -23.51 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.30 -7.88 -43.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035403721.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.467 kcal (2) G-P(sol) polarization free energy of solvation -35.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds