Wall clock time and date at job start Tue Mar 31 2020 05:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35646 * 119.95562 * 2 1 4 4 O 1.34694 * 119.11513 * 0.02562 * 3 2 1 5 5 N 1.31851 * 121.77921 * 179.97438 * 3 2 1 6 6 C 1.32565 * 121.60981 * 0.02562 * 5 3 2 7 7 C 1.39421 * 119.70306 * 359.97438 * 6 5 3 8 8 C 1.46896 * 120.82540 * 179.97438 * 7 6 5 9 9 O 1.21670 * 119.99891 * 5.71792 * 8 7 6 10 10 N 1.34776 * 119.99968 * 185.72063 * 8 7 6 11 11 C 1.46508 * 119.99617 * 174.86938 * 10 8 7 12 12 C 1.53003 * 109.46926 * 180.02562 * 11 10 8 13 13 H 1.09001 * 112.85271 * 43.79867 * 12 11 10 14 14 C 1.53783 * 113.61396 * 175.00255 * 12 11 10 15 15 C 1.53786 * 87.07837 * 140.06204 * 14 12 11 16 16 H 1.09001 * 113.60948 * 220.01487 * 15 14 12 17 17 N 1.46496 * 113.61290 * 89.20038 * 15 14 12 18 18 C 1.36942 * 119.99725 * 156.52324 * 17 15 14 19 19 H 1.08000 * 119.99986 * 359.97438 * 18 17 15 20 20 C 1.38816 * 119.99750 * 180.02562 * 18 17 15 21 21 N 1.31622 * 119.99903 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00181 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.46906 * 89.99931 * 22 20 18 24 24 H 1.48499 * 109.47088 * 210.00158 * 22 20 18 25 25 H 1.48500 * 109.47061 * 330.00237 * 22 20 18 26 26 C 1.53777 * 87.08182 * 334.56631 * 15 14 12 27 27 C 1.35023 * 119.95534 * 180.31264 * 2 1 3 28 28 O 1.21831 * 120.77035 * 359.96651 * 27 2 1 29 29 H 1.08997 * 109.47237 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.46970 * 120.00235 * 1 2 3 31 31 H 1.08999 * 109.47331 * 239.99742 * 1 2 3 32 32 H 0.96691 * 117.00499 * 179.97438 * 4 3 2 33 33 H 1.08004 * 120.14727 * 179.97438 * 6 5 3 34 34 H 0.96992 * 120.00325 * 354.87080 * 10 8 7 35 35 H 1.08997 * 109.47329 * 60.00447 * 11 10 8 36 36 H 1.09004 * 109.47004 * 299.99709 * 11 10 8 37 37 H 1.09001 * 113.61275 * 25.51390 * 14 12 11 38 38 H 1.09001 * 113.68541 * 254.61841 * 14 12 11 39 39 H 0.97001 * 120.00398 * 336.52404 * 17 15 14 40 40 H 0.96995 * 119.99768 * 180.02562 * 21 20 18 41 41 H 1.09000 * 113.61169 * 139.98565 * 26 15 14 42 42 H 1.09002 * 113.61303 * 270.88229 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1423 1.1753 0.0000 4 8 1.4500 2.3307 0.0005 5 7 3.4602 1.2172 0.0005 6 6 4.1906 0.1109 0.0005 7 6 3.5606 -1.1328 0.0006 8 6 4.3458 -2.3743 0.0000 9 8 5.5571 -2.3281 0.1045 10 7 3.7243 -3.5646 -0.1163 11 6 4.5126 -4.7944 -0.2300 12 6 3.5709 -5.9944 -0.3493 13 1 2.7424 -5.8159 -1.0347 14 6 4.2988 -7.3264 -0.5964 15 6 3.2900 -7.9667 0.3717 16 1 3.7341 -8.7043 1.0402 17 7 2.0741 -8.4532 -0.2849 18 6 1.3258 -9.4380 0.3029 19 1 1.6322 -9.8563 1.2502 20 6 0.1740 -9.8994 -0.3196 21 7 -0.5455 -10.8456 0.2455 22 14 -0.3555 -9.1764 -1.9586 23 1 0.2562 -9.9563 -3.0644 24 1 -1.8351 -9.2354 -2.0707 25 1 0.0914 -7.7628 -2.0436 26 6 3.1347 -6.5747 1.0064 27 6 2.1392 -1.1698 -0.0064 28 8 1.5435 -2.2325 -0.0116 29 1 -0.3633 1.0276 -0.0005 30 1 -0.3633 -0.5138 -0.8899 31 1 -0.3634 -0.5139 0.8899 32 1 1.9634 3.1501 0.0009 33 1 5.2688 0.1728 0.0005 34 1 2.7554 -3.6071 -0.1248 35 1 5.1371 -4.9089 0.6560 36 1 5.1451 -4.7399 -1.1160 37 1 5.3248 -7.3380 -0.2285 38 1 4.2120 -7.6894 -1.6205 39 1 1.7991 -8.0778 -1.1360 40 1 -1.3501 -11.1682 -0.1896 41 1 2.1074 -6.3299 1.2759 42 1 3.8425 -6.3809 1.8124 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086445708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:32 Heat of formation + Delta-G solvation = -21.222289 kcal Electronic energy + Delta-G solvation = -26787.520508 eV Core-core repulsion = 22770.258214 eV Total energy + Delta-G solvation = -4017.262294 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.52619 -39.92986 -39.12192 -38.44045 -37.48298 -35.76591 -34.48468 -33.10192 -31.30119 -30.52362 -28.58682 -27.62130 -25.32436 -25.05820 -24.25472 -23.30025 -21.69908 -21.07447 -20.03675 -19.34836 -18.64236 -17.87968 -17.54957 -17.48797 -16.63076 -16.26339 -15.83628 -15.33256 -15.11403 -14.99091 -14.77467 -14.36705 -14.17015 -13.87594 -13.77384 -13.46999 -13.33623 -13.16914 -12.73459 -12.61300 -12.40377 -11.93582 -11.45812 -11.29450 -11.13665 -10.87195 -10.85752 -10.65867 -10.40133 -10.23740 -10.08770 -9.79776 -9.59621 -9.44456 -9.03885 -8.86008 -8.70207 -7.24327 -5.75518 -3.10873 -0.14597 1.11452 1.23515 2.49638 2.65244 3.33986 3.39521 3.42795 3.43214 3.46564 3.50073 3.89388 4.46264 4.60656 4.70588 4.76381 4.82897 5.01989 5.05644 5.08396 5.15067 5.26000 5.39141 5.46034 5.55080 5.66950 5.74071 5.85275 5.98986 6.04239 6.22565 6.28049 6.32760 6.54092 6.64391 6.75021 6.87237 7.00729 7.01333 7.14361 7.79280 8.03277 8.37947 8.44568 9.22794 9.95325 10.15092 11.42781 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015940 B = 0.002899 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.190172 B = 9656.655998 C =10999.429777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.508 5.508 3 C 0.607 3.393 4 O -0.454 6.454 5 N -0.593 5.593 6 C 0.267 3.733 7 C -0.349 4.349 8 C 0.582 3.418 9 O -0.557 6.557 10 N -0.713 5.713 11 C 0.130 3.870 12 C -0.122 4.122 13 H 0.089 0.911 14 C -0.147 4.147 15 C 0.172 3.828 16 H 0.070 0.930 17 N -0.730 5.730 18 C -0.243 4.243 19 H 0.092 0.908 20 C 0.004 3.996 21 N -0.934 5.934 22 Si 0.883 3.117 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 C -0.166 4.166 27 C 0.551 3.449 28 O -0.507 6.507 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.445 0.555 33 H 0.190 0.810 34 H 0.415 0.585 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.362 0.638 40 H 0.259 0.741 41 H 0.068 0.932 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.053 31.430 -1.442 32.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.235 5.235 3 C 0.309 3.691 4 O -0.251 6.251 5 N -0.334 5.334 6 C 0.121 3.879 7 C -0.360 4.360 8 C 0.369 3.631 9 O -0.439 6.439 10 N -0.372 5.372 11 C 0.007 3.993 12 C -0.141 4.141 13 H 0.107 0.893 14 C -0.187 4.187 15 C 0.061 3.939 16 H 0.088 0.912 17 N -0.371 5.371 18 C -0.373 4.373 19 H 0.110 0.890 20 C -0.191 4.191 21 N -0.581 5.581 22 Si 0.713 3.287 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.207 4.207 27 C 0.351 3.649 28 O -0.383 6.383 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.308 0.692 33 H 0.207 0.793 34 H 0.259 0.741 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.195 0.805 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.173 30.927 -1.240 31.562 hybrid contribution -1.124 0.459 -1.198 1.705 sum 5.049 31.386 -2.438 31.883 Atomic orbital electron populations 1.22314 0.75331 1.05368 1.05646 1.46419 1.11321 1.05011 1.60792 1.20359 0.85141 0.81568 0.82058 1.84149 1.39276 1.14856 1.86859 1.68533 1.00496 1.31860 1.32488 1.23072 1.00806 0.84691 0.79341 1.21655 0.91923 0.97154 1.25315 1.17102 0.86604 0.82752 0.76692 1.90778 1.13420 1.87450 1.52206 1.46506 1.12702 1.05515 1.72479 1.21453 0.93809 0.82551 1.01486 1.22729 0.98444 0.92851 1.00086 0.89315 1.23443 0.99029 0.95121 1.01100 1.21009 0.87103 0.92595 0.93214 0.91162 1.42523 1.26048 1.44777 1.23723 1.19124 1.03189 1.10377 1.04621 0.89022 1.24671 0.97550 0.98529 0.98387 1.69701 1.17745 1.31112 1.39569 0.86563 0.77888 0.78947 0.85263 1.21035 1.21714 1.20298 1.23837 1.01367 1.00438 0.95016 1.17116 0.87802 0.82083 0.77878 1.90751 1.69733 1.26412 1.51359 0.87956 0.89068 0.89005 0.69184 0.79322 0.74085 0.91400 0.91934 0.89950 0.91502 0.80516 0.93058 0.91357 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.30 10.10 59.85 0.60 0.90 16 2 N -0.51 -4.04 2.99 -128.29 -0.38 -4.43 16 3 C 0.61 3.57 8.60 -88.69 -0.76 2.81 16 4 O -0.45 -0.84 11.91 -15.84 -0.19 -1.03 16 5 N -0.59 -4.09 10.31 -13.98 -0.14 -4.24 16 6 C 0.27 2.38 10.83 -16.79 -0.18 2.19 16 7 C -0.35 -4.15 5.93 -104.44 -0.62 -4.77 16 8 C 0.58 8.71 7.73 -12.76 -0.10 8.61 16 9 O -0.56 -9.39 16.42 5.22 0.09 -9.30 16 10 N -0.71 -10.95 5.48 -61.54 -0.34 -11.28 16 11 C 0.13 1.95 5.52 -4.04 -0.02 1.93 16 12 C -0.12 -1.98 3.64 -89.80 -0.33 -2.31 16 13 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 14 C -0.15 -2.38 7.38 -25.92 -0.19 -2.57 16 15 C 0.17 3.42 4.55 -67.12 -0.31 3.12 16 16 H 0.07 1.41 8.11 -51.93 -0.42 0.99 16 17 N -0.73 -17.75 5.12 -52.64 -0.27 -18.02 16 18 C -0.24 -7.00 10.45 -15.06 -0.16 -7.16 16 19 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 20 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 21 N -0.93 -29.72 13.97 55.49 0.78 -28.95 16 22 Si 0.88 22.55 27.74 -169.99 -4.71 17.83 16 23 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 25 H -0.28 -6.72 6.52 56.52 0.37 -6.35 16 26 C -0.17 -2.95 7.44 -25.92 -0.19 -3.15 16 27 C 0.55 6.44 7.47 -14.63 -0.11 6.33 16 28 O -0.51 -7.36 13.90 5.07 0.07 -7.29 16 29 H 0.10 0.30 6.77 -51.93 -0.35 -0.06 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.45 -1.24 9.08 45.56 0.41 -0.82 16 33 H 0.19 1.44 7.70 -52.48 -0.40 1.04 16 34 H 0.41 6.61 5.14 -40.82 -0.21 6.40 16 35 H 0.07 1.02 7.85 -51.93 -0.41 0.61 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.36 8.67 5.76 -40.82 -0.24 8.44 16 40 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 41 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 42 H 0.07 1.16 7.90 -51.93 -0.41 0.75 16 LS Contribution 355.34 15.07 5.35 5.35 Total: -1.00 -37.40 355.34 -6.79 -44.19 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -4.57 Total: 11.18 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -2.46 Total: 5.98 kcal Atomic # 7 Polarization: -66.55 SS G_CDS: -0.36 Total: -66.91 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.03 Total: -17.62 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.71 Total: 17.83 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -37.40 -6.79 -44.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086445708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.963 kcal (2) G-P(sol) polarization free energy of solvation -37.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds