Wall clock time and date at job start Tue Mar 31 2020 05:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35646 * 119.95562 * 2 1 4 4 O 1.34694 * 119.11513 * 0.02562 * 3 2 1 5 5 N 1.31851 * 121.77921 * 179.97438 * 3 2 1 6 6 C 1.32565 * 121.60981 * 0.02562 * 5 3 2 7 7 C 1.39421 * 119.70306 * 359.97438 * 6 5 3 8 8 C 1.46896 * 120.82540 * 179.97438 * 7 6 5 9 9 O 1.21670 * 119.99891 * 5.71792 * 8 7 6 10 10 N 1.34776 * 119.99968 * 185.72063 * 8 7 6 11 11 C 1.46508 * 119.99617 * 174.86938 * 10 8 7 12 12 C 1.53003 * 109.46926 * 180.02562 * 11 10 8 13 13 H 1.09001 * 112.85271 * 43.79867 * 12 11 10 14 14 C 1.53783 * 113.61396 * 175.00255 * 12 11 10 15 15 C 1.53786 * 87.07837 * 140.06204 * 14 12 11 16 16 H 1.09001 * 113.60948 * 220.01487 * 15 14 12 17 17 N 1.46496 * 113.61290 * 89.20038 * 15 14 12 18 18 C 1.36942 * 119.99725 * 156.52324 * 17 15 14 19 19 H 1.08000 * 119.99986 * 359.97438 * 18 17 15 20 20 C 1.38816 * 119.99750 * 180.02562 * 18 17 15 21 21 N 1.31622 * 119.99903 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00181 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.46906 * 89.99931 * 22 20 18 24 24 H 1.48499 * 109.47088 * 210.00158 * 22 20 18 25 25 H 1.48500 * 109.47061 * 330.00237 * 22 20 18 26 26 C 1.53777 * 87.08182 * 334.56631 * 15 14 12 27 27 C 1.35023 * 119.95534 * 180.31264 * 2 1 3 28 28 O 1.21831 * 120.77035 * 359.96651 * 27 2 1 29 29 H 1.08997 * 109.47237 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.46970 * 120.00235 * 1 2 3 31 31 H 1.08999 * 109.47331 * 239.99742 * 1 2 3 32 32 H 0.96691 * 117.00499 * 179.97438 * 4 3 2 33 33 H 1.08004 * 120.14727 * 179.97438 * 6 5 3 34 34 H 0.96992 * 120.00325 * 354.87080 * 10 8 7 35 35 H 1.08997 * 109.47329 * 60.00447 * 11 10 8 36 36 H 1.09004 * 109.47004 * 299.99709 * 11 10 8 37 37 H 1.09001 * 113.61275 * 25.51390 * 14 12 11 38 38 H 1.09001 * 113.68541 * 254.61841 * 14 12 11 39 39 H 0.97001 * 120.00398 * 336.52404 * 17 15 14 40 40 H 0.96995 * 119.99768 * 180.02562 * 21 20 18 41 41 H 1.09000 * 113.61169 * 139.98565 * 26 15 14 42 42 H 1.09002 * 113.61303 * 270.88229 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1423 1.1753 0.0000 4 8 1.4500 2.3307 0.0005 5 7 3.4602 1.2172 0.0005 6 6 4.1906 0.1109 0.0005 7 6 3.5606 -1.1328 0.0006 8 6 4.3458 -2.3743 0.0000 9 8 5.5571 -2.3281 0.1045 10 7 3.7243 -3.5646 -0.1163 11 6 4.5126 -4.7944 -0.2300 12 6 3.5709 -5.9944 -0.3493 13 1 2.7424 -5.8159 -1.0347 14 6 4.2988 -7.3264 -0.5964 15 6 3.2900 -7.9667 0.3717 16 1 3.7341 -8.7043 1.0402 17 7 2.0741 -8.4532 -0.2849 18 6 1.3258 -9.4380 0.3029 19 1 1.6322 -9.8563 1.2502 20 6 0.1740 -9.8994 -0.3196 21 7 -0.5455 -10.8456 0.2455 22 14 -0.3555 -9.1764 -1.9586 23 1 0.2562 -9.9563 -3.0644 24 1 -1.8351 -9.2354 -2.0707 25 1 0.0914 -7.7628 -2.0436 26 6 3.1347 -6.5747 1.0064 27 6 2.1392 -1.1698 -0.0064 28 8 1.5435 -2.2325 -0.0116 29 1 -0.3633 1.0276 -0.0005 30 1 -0.3633 -0.5138 -0.8899 31 1 -0.3634 -0.5139 0.8899 32 1 1.9634 3.1501 0.0009 33 1 5.2688 0.1728 0.0005 34 1 2.7554 -3.6071 -0.1248 35 1 5.1371 -4.9089 0.6560 36 1 5.1451 -4.7399 -1.1160 37 1 5.3248 -7.3380 -0.2285 38 1 4.2120 -7.6894 -1.6205 39 1 1.7991 -8.0778 -1.1360 40 1 -1.3501 -11.1682 -0.1896 41 1 2.1074 -6.3299 1.2759 42 1 3.8425 -6.3809 1.8124 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086445708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:31 Heat of formation + Delta-G solvation = -53.299872 kcal Electronic energy + Delta-G solvation = -26788.911496 eV Core-core repulsion = 22770.258214 eV Total energy + Delta-G solvation = -4018.653282 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.19509 -40.88610 -40.09795 -39.63738 -38.07362 -36.43347 -35.98576 -34.86513 -32.71822 -31.95599 -29.11821 -28.90227 -26.48615 -26.17182 -25.31743 -24.80015 -23.15506 -22.09026 -20.61261 -20.21254 -19.99113 -19.55414 -18.83419 -18.10785 -17.34515 -17.08597 -16.92476 -16.58893 -16.40508 -16.05476 -15.74498 -15.58272 -15.45300 -15.01891 -14.78324 -14.65032 -14.50206 -14.37099 -14.04422 -13.56007 -13.39051 -13.16933 -13.09342 -13.01648 -12.69147 -12.21875 -11.96366 -11.89157 -11.65905 -11.60673 -11.46723 -11.44311 -11.07923 -10.96772 -10.79107 -10.07450 -9.63318 -9.31406 -8.04704 -5.37951 -0.79337 0.50879 0.58362 1.35416 1.38498 1.45450 1.61432 2.15465 2.32994 2.45882 2.53701 3.00196 3.19466 3.25181 3.50013 3.71739 3.75076 3.87712 3.99312 4.09746 4.17163 4.25318 4.27006 4.38000 4.50226 4.68477 4.69992 4.75630 4.83875 4.90424 4.94545 5.07003 5.10226 5.24704 5.32065 5.51959 5.57683 5.78944 5.93736 6.21097 6.33659 6.51082 6.68823 7.05525 7.26694 7.82763 8.01237 9.16914 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015940 B = 0.002899 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.190172 B = 9656.655998 C =10999.429777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.511 5.511 3 C 0.625 3.375 4 O -0.432 6.432 5 N -0.587 5.587 6 C 0.295 3.705 7 C -0.388 4.388 8 C 0.579 3.421 9 O -0.585 6.585 10 N -0.721 5.721 11 C 0.137 3.863 12 C -0.109 4.109 13 H 0.077 0.923 14 C -0.127 4.127 15 C 0.148 3.852 16 H 0.063 0.937 17 N -0.735 5.735 18 C -0.232 4.232 19 H 0.059 0.941 20 C -0.064 4.064 21 N -0.983 5.983 22 Si 0.954 3.046 23 H -0.275 1.275 24 H -0.294 1.294 25 H -0.258 1.258 26 C -0.157 4.157 27 C 0.549 3.451 28 O -0.547 6.547 29 H 0.133 0.867 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.468 0.532 33 H 0.202 0.798 34 H 0.411 0.589 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.113 0.887 38 H 0.070 0.930 39 H 0.365 0.635 40 H 0.258 0.742 41 H 0.042 0.958 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.795 35.178 -2.706 35.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.236 5.236 3 C 0.327 3.673 4 O -0.232 6.232 5 N -0.328 5.328 6 C 0.146 3.854 7 C -0.400 4.400 8 C 0.368 3.632 9 O -0.468 6.468 10 N -0.379 5.379 11 C 0.013 3.987 12 C -0.128 4.128 13 H 0.095 0.905 14 C -0.166 4.166 15 C 0.039 3.961 16 H 0.081 0.919 17 N -0.376 5.376 18 C -0.363 4.363 19 H 0.077 0.923 20 C -0.255 4.255 21 N -0.634 5.634 22 Si 0.782 3.218 23 H -0.201 1.201 24 H -0.221 1.221 25 H -0.182 1.182 26 C -0.198 4.198 27 C 0.350 3.650 28 O -0.426 6.426 29 H 0.152 0.848 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.336 0.664 33 H 0.218 0.782 34 H 0.255 0.745 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.131 0.869 38 H 0.089 0.911 39 H 0.199 0.801 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.928 34.807 -2.501 35.578 hybrid contribution -1.346 -0.498 -0.682 1.589 sum 5.582 34.309 -3.183 34.906 Atomic orbital electron populations 1.22506 0.73827 1.07256 1.05266 1.46297 1.12260 1.04828 1.60242 1.20470 0.84785 0.82221 0.79809 1.84186 1.39030 1.14601 1.85383 1.68673 1.00867 1.30563 1.32674 1.23272 1.01496 0.84102 0.76504 1.21393 0.92069 0.96805 1.29700 1.17495 0.86544 0.83429 0.75737 1.90742 1.14442 1.87927 1.53718 1.46599 1.12578 1.05918 1.72851 1.21353 0.93366 0.82075 1.01891 1.22561 0.98261 0.93622 0.98345 0.90505 1.23333 0.99375 0.93583 1.00274 1.21334 0.86721 0.93298 0.94779 0.91909 1.42477 1.27089 1.44115 1.23962 1.19088 1.03349 1.10526 1.03323 0.92347 1.25492 0.97904 0.99451 1.02693 1.69879 1.18535 1.33245 1.41697 0.85419 0.77024 0.79103 0.80303 1.20086 1.22055 1.18242 1.23726 1.00532 0.98865 0.96648 1.17082 0.87870 0.82515 0.77504 1.90709 1.70450 1.28025 1.53403 0.84831 0.89472 0.89530 0.66416 0.78158 0.74451 0.91250 0.91168 0.86913 0.91143 0.80139 0.93278 0.93925 0.88948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.47 10.10 127.77 1.29 1.76 16 2 N -0.51 -7.17 2.99 -789.42 -2.36 -9.53 16 3 C 0.62 5.35 8.60 179.67 1.55 6.89 16 4 O -0.43 0.32 11.91 -79.59 -0.95 -0.63 16 5 N -0.59 -6.34 10.31 -311.74 -3.21 -9.56 16 6 C 0.30 4.70 10.83 84.87 0.92 5.62 16 7 C -0.39 -8.97 5.93 -19.75 -0.12 -9.09 16 8 C 0.58 17.21 7.73 86.51 0.67 17.88 16 9 O -0.58 -19.43 16.42 -4.25 -0.07 -19.50 16 10 N -0.72 -22.04 5.48 -466.85 -2.56 -24.60 16 11 C 0.14 3.94 5.52 86.38 0.48 4.41 16 12 C -0.11 -3.41 3.64 -10.27 -0.04 -3.44 16 13 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 14 C -0.13 -3.84 7.38 31.12 0.23 -3.61 16 15 C 0.15 5.83 4.55 45.52 0.21 6.04 16 16 H 0.06 2.54 8.11 -2.39 -0.02 2.52 16 17 N -0.73 -35.78 5.12 -320.44 -1.64 -37.42 16 18 C -0.23 -13.68 10.45 84.03 0.88 -12.81 16 19 H 0.06 3.76 8.06 -2.91 -0.02 3.73 16 20 C -0.06 -3.89 5.50 84.86 0.47 -3.42 16 21 N -0.98 -64.49 13.97 21.65 0.30 -64.19 16 22 Si 0.95 47.05 27.74 68.60 1.90 48.95 16 23 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 24 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 25 H -0.26 -11.73 6.52 99.48 0.65 -11.08 16 26 C -0.16 -5.55 7.44 31.12 0.23 -5.32 16 27 C 0.55 12.56 7.47 85.18 0.64 13.20 16 28 O -0.55 -16.18 13.90 -4.77 -0.07 -16.24 16 29 H 0.13 0.31 6.77 -2.39 -0.02 0.30 16 30 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.47 -4.90 9.08 -74.06 -0.67 -5.57 16 33 H 0.20 2.66 7.70 -2.91 -0.02 2.64 16 34 H 0.41 13.32 5.14 -92.71 -0.48 12.84 16 35 H 0.07 1.98 7.85 -2.39 -0.02 1.96 16 36 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.11 2.78 8.10 -2.39 -0.02 2.76 16 38 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.37 17.17 5.76 -92.71 -0.53 16.63 16 40 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 41 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.09 2.87 7.90 -2.39 -0.02 2.85 16 Total: -1.00 -83.95 355.34 -1.90 -85.85 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: -0.65 Total: 28.74 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: 7.40 Total: 18.12 kcal Atomic # 7 Polarization: -135.82 SS G_CDS: -9.47 Total: -145.29 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -1.08 Total: -36.37 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 1.90 Total: 48.95 kcal Total: -83.95 -1.90 -85.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086445708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.550 kcal (2) G-P(sol) polarization free energy of solvation -83.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds