Wall clock time and date at job start Tue Mar 31 2020 05:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.47016 * 111.03522 * 2 1 4 4 C 1.53089 * 109.29475 * 177.65016 * 3 2 1 5 5 O 1.43023 * 109.25922 * 56.82718 * 4 3 2 6 6 C 1.43009 * 113.73857 * 301.33357 * 5 4 3 7 7 C 1.47015 * 110.99788 * 236.34457 * 2 1 3 8 8 C 1.53005 * 109.50633 * 62.41318 * 7 2 1 9 9 O 1.42903 * 109.47001 * 179.91055 * 8 7 2 10 10 C 1.53001 * 109.50865 * 302.32682 * 7 2 1 11 11 N 1.46500 * 109.46701 * 305.49875 * 10 7 2 12 12 S 1.65606 * 119.99576 * 165.18978 * 11 10 7 13 13 O 1.42097 * 104.27836 * 308.92561 * 12 11 10 14 14 O 1.42099 * 104.27498 * 181.07140 * 12 11 10 15 15 C 1.81399 * 104.44970 * 64.99900 * 12 11 10 16 16 C 1.53000 * 109.47077 * 179.97438 * 15 12 11 17 17 C 1.50696 * 109.47008 * 180.02562 * 16 15 12 18 18 H 1.08003 * 120.00324 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00113 * 179.72024 * 17 16 15 20 20 N 1.31516 * 119.99475 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00377 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46788 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47049 * 120.00370 * 21 19 17 24 24 H 1.48501 * 109.46959 * 240.00364 * 21 19 17 25 25 H 1.08998 * 109.47011 * 183.80477 * 1 2 3 26 26 H 1.08994 * 109.46834 * 303.80530 * 1 2 3 27 27 H 1.08998 * 109.46807 * 63.80568 * 1 2 3 28 28 H 1.09001 * 109.50558 * 57.69480 * 3 2 1 29 29 H 1.09000 * 109.47214 * 297.59074 * 3 2 1 30 30 H 1.09002 * 109.50981 * 296.89921 * 4 3 2 31 31 H 1.08995 * 109.51370 * 176.76438 * 4 3 2 32 32 H 1.09005 * 109.51033 * 298.73141 * 6 5 4 33 33 H 1.08998 * 109.50718 * 178.60174 * 6 5 4 34 34 H 1.08999 * 109.47112 * 299.91118 * 8 7 2 35 35 H 1.09004 * 109.47247 * 59.91458 * 8 7 2 36 36 H 0.96697 * 113.99633 * 179.97438 * 9 8 7 37 37 H 1.08999 * 109.47203 * 185.50049 * 10 7 2 38 38 H 1.08998 * 109.46813 * 65.50194 * 10 7 2 39 39 H 0.97001 * 120.00194 * 345.18633 * 11 10 7 40 40 H 1.09004 * 109.46718 * 59.99877 * 15 12 11 41 41 H 1.08993 * 109.47126 * 299.99985 * 15 12 11 42 42 H 1.08994 * 109.46910 * 59.99758 * 16 15 12 43 43 H 1.09001 * 109.47086 * 299.99744 * 16 15 12 44 44 H 0.97010 * 119.99708 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9968 1.3722 0.0000 4 6 3.5258 1.3261 0.0592 5 8 4.0176 0.5569 -1.0417 6 6 3.5251 -0.7853 -1.0718 7 6 1.9959 -0.7606 -1.1425 8 6 1.5554 -0.0936 -2.4471 9 8 2.0696 -0.8324 -3.5570 10 6 1.4590 -2.1926 -1.0942 11 7 1.7701 -2.7870 0.2081 12 16 1.0073 -4.1765 0.6875 13 8 -0.3738 -3.9017 0.4971 14 8 1.5310 -4.4347 1.9830 15 6 1.5745 -5.4338 -0.4906 16 6 0.9321 -6.7797 -0.1489 17 6 1.4038 -7.8243 -1.1272 18 1 2.0932 -7.5554 -1.9139 19 6 0.9601 -9.1249 -1.0144 20 7 0.1249 -9.4536 -0.0531 21 14 1.5442 -10.4197 -2.2275 22 1 2.4725 -9.7982 -3.2060 23 1 2.2496 -11.5019 -1.4951 24 1 0.3753 -10.9883 -2.9456 25 1 -0.3633 -1.0254 0.0682 26 1 -0.3633 0.5717 0.8539 27 1 -0.3633 0.4536 -0.9221 28 1 1.6149 1.9090 0.8684 29 1 1.6830 1.8822 -0.9108 30 1 3.8401 0.8641 0.9951 31 1 3.9231 2.3395 0.0015 32 1 3.8392 -1.3088 -0.1688 33 1 3.9216 -1.2990 -1.9476 34 1 0.4667 -0.0749 -2.4961 35 1 1.9382 0.9264 -2.4810 36 1 1.8287 -0.4660 -4.4188 37 1 1.9252 -2.7822 -1.8835 38 1 0.3788 -2.1806 -1.2395 39 1 2.4230 -2.3667 0.7896 40 1 2.6592 -5.5239 -0.4316 41 1 1.2887 -5.1405 -1.5007 42 1 -0.1526 -6.6898 -0.2075 43 1 1.2183 -7.0729 0.8612 44 1 -0.1876 -10.3686 0.0261 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001309861816.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:17 Heat of formation + Delta-G solvation = -188.838021 kcal Electronic energy + Delta-G solvation = -27069.571483 eV Core-core repulsion = 23148.192026 eV Total energy + Delta-G solvation = -3921.379457 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.55067 -38.15732 -37.83162 -37.00954 -36.86271 -35.87936 -35.71921 -33.10686 -32.27257 -29.95075 -27.60264 -27.55056 -26.50526 -25.14592 -23.68102 -23.47651 -20.27842 -19.87930 -19.09210 -18.80981 -18.27444 -17.71830 -17.30869 -16.95844 -16.95406 -16.52896 -16.41008 -16.16142 -15.74763 -15.44134 -15.07136 -15.02396 -14.68132 -14.53552 -14.33337 -13.77724 -13.66526 -13.39720 -13.28948 -13.16501 -13.07880 -12.95127 -12.93755 -12.76777 -12.70891 -12.24262 -12.20628 -12.09871 -11.94819 -11.72622 -11.57102 -11.18183 -10.86700 -10.64472 -10.60319 -10.27204 -9.38238 -8.25054 -6.38774 -0.64244 1.41800 1.42360 1.55882 1.87908 2.39081 2.64391 2.83453 2.89951 3.08460 3.27039 3.31335 3.54403 3.72690 3.91964 4.01148 4.05545 4.15453 4.19684 4.25681 4.31892 4.40201 4.55092 4.57055 4.58188 4.67453 4.74766 4.77515 4.79285 4.89454 4.93871 5.05925 5.09596 5.29223 5.29959 5.69957 5.86209 5.93937 6.07738 6.16530 6.17263 6.75134 6.85826 7.31350 8.87438 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.019942 B = 0.003351 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.757045 B = 8353.793641 C = 8930.707448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.529 5.529 3 C 0.013 3.987 4 C 0.055 3.945 5 O -0.393 6.393 6 C 0.078 3.922 7 C 0.076 3.924 8 C 0.060 3.940 9 O -0.577 6.577 10 C 0.126 3.874 11 N -1.097 6.097 12 S 2.624 3.376 13 O -0.995 6.995 14 O -1.000 7.000 15 C -0.590 4.590 16 C 0.020 3.980 17 C -0.537 4.537 18 H 0.076 0.924 19 C -0.005 4.005 20 N -0.934 5.934 21 Si 0.974 3.026 22 H -0.256 1.256 23 H -0.279 1.279 24 H -0.278 1.278 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.043 0.957 28 H 0.103 0.897 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.119 0.881 32 H 0.061 0.939 33 H 0.107 0.893 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.398 0.602 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.424 0.576 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.007 0.993 43 H 0.006 0.994 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.515 25.925 -5.503 27.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.255 5.255 3 C -0.114 4.114 4 C -0.022 4.022 5 O -0.311 6.311 6 C 0.000 4.000 7 C -0.016 4.016 8 C -0.020 4.020 9 O -0.384 6.384 10 C -0.001 4.001 11 N -0.859 5.859 12 S 2.720 3.280 13 O -0.985 6.985 14 O -0.990 6.990 15 C -0.722 4.722 16 C -0.019 4.019 17 C -0.576 4.576 18 H 0.094 0.906 19 C -0.203 4.203 20 N -0.574 5.574 21 Si 0.798 3.202 22 H -0.179 1.179 23 H -0.204 1.204 24 H -0.203 1.203 25 H 0.081 0.919 26 H 0.101 0.899 27 H 0.062 0.938 28 H 0.122 0.878 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.137 0.863 32 H 0.079 0.921 33 H 0.125 0.875 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.248 0.752 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.261 0.739 40 H 0.160 0.840 41 H 0.159 0.841 42 H 0.026 0.974 43 H 0.024 0.976 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.215 25.153 -4.031 26.003 hybrid contribution -0.300 -0.330 -1.369 1.439 sum 4.915 24.824 -5.400 25.875 Atomic orbital electron populations 1.22575 0.86414 1.02915 1.01823 1.62448 1.08984 1.14419 1.39649 1.22967 0.96506 0.89017 1.02960 1.22888 0.92235 0.97333 0.89724 1.87998 1.70077 1.23976 1.49071 1.22665 0.90202 0.83981 1.03120 1.21810 0.97233 0.93273 0.89265 1.22639 0.97626 0.95254 0.86482 1.86417 1.78360 1.56102 1.17527 1.21427 1.01152 0.93308 0.84174 1.55110 1.60215 1.41869 1.28736 1.04347 0.73890 0.74903 0.74886 1.93485 1.34063 1.83815 1.87109 1.93500 1.80903 1.85635 1.38947 1.30362 1.12475 1.12346 1.17038 1.18823 0.95214 0.90677 0.97188 1.21554 1.28041 0.93850 1.14188 0.90629 1.26120 0.95007 1.01428 0.97728 1.70115 1.33604 1.19894 1.33800 0.85261 0.78350 0.78108 0.78512 1.17925 1.20420 1.20329 0.91898 0.89927 0.93814 0.87835 0.93029 0.92232 0.86340 0.92065 0.87488 0.92677 0.92030 0.75177 0.89149 0.90543 0.73870 0.83984 0.84091 0.97435 0.97603 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 8.82 127.69 1.13 1.31 16 2 N -0.53 -9.24 4.38 -871.63 -3.82 -13.06 16 3 C 0.01 0.17 5.27 86.31 0.45 0.62 16 4 C 0.05 0.73 7.01 72.01 0.50 1.24 16 5 O -0.39 -7.31 10.28 -148.98 -1.53 -8.84 16 6 C 0.08 1.46 5.50 72.02 0.40 1.85 16 7 C 0.08 1.40 0.19 3.54 0.00 1.40 16 8 C 0.06 0.93 5.11 71.98 0.37 1.30 16 9 O -0.58 -8.92 12.37 -148.98 -1.84 -10.76 16 10 C 0.13 2.80 4.18 86.38 0.36 3.16 16 11 N -1.10 -27.96 5.49 -187.49 -1.03 -28.99 16 12 S 2.62 94.15 5.46 -56.49 -0.31 93.84 16 13 O -0.99 -41.14 17.50 -127.65 -2.23 -43.37 16 14 O -1.00 -42.49 18.08 -127.65 -2.31 -44.80 16 15 C -0.59 -22.47 6.01 71.98 0.43 -22.04 16 16 C 0.02 1.05 4.98 29.85 0.15 1.20 16 17 C -0.54 -30.00 9.11 25.60 0.23 -29.77 16 18 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 19 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 20 N -0.93 -57.19 13.29 21.45 0.28 -56.91 16 21 Si 0.97 43.55 29.54 68.60 2.03 45.57 16 22 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 23 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 25 H 0.06 1.45 6.40 -2.39 -0.02 1.43 16 26 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.04 0.64 6.36 -2.39 -0.02 0.62 16 28 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.05 0.60 6.39 -2.39 -0.02 0.59 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 1.14 6.86 -2.38 -0.02 1.13 16 33 H 0.11 2.05 7.60 -2.39 -0.02 2.04 16 34 H 0.06 0.79 6.46 -2.39 -0.02 0.77 16 35 H 0.06 0.89 6.07 -2.38 -0.01 0.87 16 36 H 0.40 2.85 9.12 -74.06 -0.68 2.17 16 37 H 0.09 1.86 7.85 -2.39 -0.02 1.84 16 38 H 0.08 1.81 6.25 -2.39 -0.01 1.79 16 39 H 0.42 9.70 7.29 -96.74 -0.71 9.00 16 40 H 0.14 4.77 8.14 -2.39 -0.02 4.75 16 41 H 0.14 4.67 8.14 -2.39 -0.02 4.65 16 42 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 Total: -1.00 -78.29 357.17 -6.63 -84.92 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -0.35 Total: 21.93 kcal Atomic # 6 Polarization: -44.02 SS G_CDS: 4.49 Total: -39.53 kcal Atomic # 7 Polarization: -94.40 SS G_CDS: -4.57 Total: -98.96 kcal Atomic # 8 Polarization: -99.86 SS G_CDS: -7.92 Total: -107.77 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: 94.15 SS G_CDS: -0.31 Total: 93.84 kcal Total: -78.29 -6.63 -84.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309861816.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.919 kcal (2) G-P(sol) polarization free energy of solvation -78.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds