Wall clock time and date at job start Tue Mar 31 2020 04:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38240 * 120.36395 * 2 1 4 4 C 1.39404 * 118.50456 * 179.97438 * 3 2 1 5 5 O 1.35508 * 120.46327 * 180.02562 * 4 3 2 6 6 N 1.32749 * 119.07071 * 359.97438 * 4 3 2 7 7 C 1.32464 * 120.64555 * 0.02562 * 6 4 3 8 8 N 1.38393 * 119.18810 * 179.97438 * 7 6 4 9 9 C 1.46965 * 111.00057 * 0.02562 * 8 7 6 10 10 C 1.53050 * 109.38086 * 183.17551 * 9 8 7 11 11 N 1.46957 * 109.36564 * 301.63124 * 10 9 8 12 12 C 1.46902 * 110.99867 * 183.16840 * 11 10 9 13 13 C 1.52998 * 109.46926 * 52.41687 * 12 11 10 14 14 O 1.42895 * 109.47221 * 62.59777 * 13 12 11 15 15 C 1.42900 * 114.00279 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47414 * 180.02562 * 15 14 13 17 17 H 1.08007 * 119.99554 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00100 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00082 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99965 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46676 * 60.00629 * 20 18 16 22 22 H 1.48504 * 109.47088 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47255 * 300.00703 * 20 18 16 24 24 C 1.46957 * 110.89949 * 59.28999 * 11 10 9 25 25 C 1.46962 * 111.00237 * 123.80028 * 8 7 6 26 26 N 1.32431 * 120.36615 * 180.25288 * 2 1 3 27 27 H 1.09007 * 109.46991 * 89.99934 * 1 2 3 28 28 H 1.08996 * 109.47074 * 209.99416 * 1 2 3 29 29 H 1.08996 * 109.47106 * 330.00284 * 1 2 3 30 30 H 1.07996 * 120.75003 * 359.97067 * 3 2 1 31 31 H 0.96708 * 114.00064 * 269.97796 * 5 4 3 32 32 H 1.08997 * 109.48279 * 303.15549 * 9 8 7 33 33 H 1.08995 * 109.48640 * 63.19410 * 9 8 7 34 34 H 1.09010 * 109.48680 * 61.57893 * 10 9 8 35 35 H 1.08999 * 109.48810 * 181.63669 * 10 9 8 36 36 H 1.08991 * 109.46972 * 172.42164 * 12 11 10 37 37 H 1.09008 * 109.46943 * 292.41600 * 12 11 10 38 38 H 1.08999 * 109.46806 * 182.59770 * 13 12 11 39 39 H 1.08999 * 109.47211 * 302.59505 * 13 12 11 40 40 H 1.09007 * 109.47130 * 299.99959 * 15 14 13 41 41 H 1.08997 * 109.46899 * 59.99878 * 15 14 13 42 42 H 0.96998 * 120.00047 * 179.97438 * 19 18 16 43 43 H 1.08995 * 109.48926 * 180.72478 * 24 11 10 44 44 H 1.09003 * 109.50801 * 60.66666 * 24 11 10 45 45 H 1.08999 * 109.48364 * 296.78250 * 25 8 7 46 46 H 1.09001 * 109.48272 * 56.81825 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2058 1.1928 0.0000 4 6 3.5991 1.1475 0.0005 5 8 4.3236 2.2927 0.0011 6 7 4.2061 -0.0330 0.0016 7 6 3.5014 -1.1546 0.0016 8 7 4.1653 -2.3689 0.0021 9 6 5.6218 -2.1728 0.0032 10 6 6.3176 -3.5337 -0.0762 11 7 5.8993 -4.3621 1.0633 12 6 6.6041 -5.6510 1.0639 13 6 8.1117 -5.4079 0.9704 14 8 8.5495 -4.6827 2.1212 15 6 9.9507 -4.4024 2.1333 16 6 10.2996 -3.6392 3.3850 17 1 9.5284 -3.3931 4.1001 18 6 11.6034 -3.2559 3.6180 19 7 12.5425 -3.5560 2.7475 20 14 12.0357 -2.3092 5.1692 21 1 11.6828 -3.1231 6.3602 22 1 13.4918 -2.0181 5.1818 23 1 11.2760 -1.0337 5.1985 24 6 4.4429 -4.5582 1.0622 25 6 3.7479 -3.1969 1.1422 26 7 2.1765 -1.1426 -0.0050 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3633 0.8900 0.5138 30 1 1.6841 2.1384 -0.0005 31 1 4.5346 2.6251 -0.8822 32 1 5.9078 -1.5673 -0.8568 33 1 5.9196 -1.6650 0.9206 34 1 6.0413 -4.0296 -1.0068 35 1 7.3979 -3.3921 -0.0462 36 1 6.3789 -6.1877 1.9854 37 1 6.2779 -6.2438 0.2093 38 1 8.6318 -6.3647 0.9244 39 1 8.3317 -4.8311 0.0721 40 1 10.5087 -5.3386 2.1117 41 1 10.2093 -3.8050 1.2591 42 1 13.4596 -3.2860 2.9112 43 1 4.1568 -5.1636 1.9222 44 1 4.1447 -5.0658 0.1448 45 1 4.0248 -2.7009 2.0725 46 1 2.6674 -3.3378 1.1129 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886657708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:49 Heat of formation + Delta-G solvation = -4.904041 kcal Electronic energy + Delta-G solvation = -27259.974596 eV Core-core repulsion = 23379.253009 eV Total energy + Delta-G solvation = -3880.721587 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.59459 -39.42345 -37.95347 -36.90274 -35.50141 -33.87137 -32.65234 -31.74411 -31.04113 -29.52031 -28.60946 -27.08743 -25.77631 -24.08977 -23.34079 -22.42541 -22.25104 -21.23060 -19.76484 -19.03612 -18.00472 -17.28729 -16.34871 -16.04504 -15.72278 -15.68442 -15.52579 -14.99582 -14.76530 -14.67004 -14.50836 -14.32369 -13.93753 -13.83047 -13.57594 -13.05951 -12.91627 -12.85630 -12.30748 -12.23649 -12.02744 -11.78240 -11.34635 -11.31117 -11.13846 -10.97259 -10.89762 -10.79059 -10.65294 -10.54218 -10.30087 -10.17749 -9.91438 -9.42925 -9.04943 -8.74686 -8.61082 -8.12365 -8.05703 -6.05492 -4.06298 0.62765 0.75848 2.84642 3.12336 3.36758 3.38763 3.43457 3.45396 3.97539 4.00354 4.39182 4.40295 4.72950 4.75430 4.84143 4.86503 4.96683 5.09166 5.12562 5.14961 5.24328 5.31019 5.39027 5.40038 5.45532 5.52798 5.61583 5.65437 5.75170 5.83938 5.89006 5.90572 6.07196 6.14517 6.21249 6.30961 6.47411 6.52764 7.00658 7.08569 7.14306 7.22809 7.24435 7.48358 7.86183 7.93015 8.22203 8.66414 9.07950 9.58373 11.06133 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013167 B = 0.002895 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.955993 B = 9669.613454 C =11135.306098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.211 3.789 3 C -0.280 4.280 4 C 0.389 3.611 5 O -0.476 6.476 6 N -0.572 5.572 7 C 0.527 3.473 8 N -0.461 5.461 9 C 0.074 3.926 10 C 0.053 3.947 11 N -0.526 5.526 12 C 0.063 3.937 13 C 0.060 3.940 14 O -0.379 6.379 15 C 0.194 3.806 16 C -0.510 4.510 17 H 0.066 0.934 18 C 0.055 3.945 19 N -0.901 5.901 20 Si 0.907 3.093 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.057 3.943 25 C 0.072 3.928 26 N -0.538 5.538 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.150 0.850 31 H 0.408 0.592 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.037 0.963 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.039 0.961 38 H 0.041 0.959 39 H 0.038 0.962 40 H 0.002 0.998 41 H 0.003 0.997 42 H 0.264 0.736 43 H 0.087 0.913 44 H 0.042 0.958 45 H 0.056 0.944 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.535 5.872 -10.093 27.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.064 3.936 3 C -0.305 4.305 4 C 0.200 3.800 5 O -0.284 6.284 6 N -0.303 5.303 7 C 0.171 3.829 8 N -0.180 5.180 9 C -0.053 4.053 10 C -0.076 4.076 11 N -0.252 5.252 12 C -0.064 4.064 13 C -0.018 4.018 14 O -0.298 6.298 15 C 0.120 3.880 16 C -0.548 4.548 17 H 0.084 0.916 18 C -0.145 4.145 19 N -0.540 5.540 20 Si 0.734 3.266 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.071 4.071 25 C -0.054 4.054 26 N -0.259 5.259 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.167 0.833 31 H 0.268 0.732 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.055 0.945 35 H 0.117 0.883 36 H 0.101 0.899 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.073 0.927 43 H 0.105 0.895 44 H 0.060 0.940 45 H 0.075 0.925 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -23.951 5.038 -9.366 26.206 hybrid contribution 0.400 1.334 -0.230 1.411 sum -23.552 6.372 -9.595 26.217 Atomic orbital electron populations 1.20786 0.87358 1.04232 1.03809 1.21462 0.97426 0.86912 0.87796 1.22559 0.94434 1.01138 1.12373 1.19249 0.87017 0.84962 0.88752 1.84726 1.74313 1.35033 1.34281 1.67900 1.42720 0.98555 1.21139 1.20764 0.85873 0.87951 0.88263 1.58715 1.08555 1.09293 1.41481 1.22174 0.82017 0.97360 1.03777 1.22333 1.01277 0.92510 0.91430 1.62084 1.04097 1.16163 1.42817 1.22133 0.93551 0.89686 1.01032 1.22344 0.92830 0.95700 0.90917 1.87971 1.27539 1.74649 1.39658 1.20173 0.75776 0.94790 0.97260 1.21020 0.93601 1.34955 1.05268 0.91594 1.24940 0.95927 0.96310 0.97364 1.69955 1.01408 1.46981 1.35677 0.86413 0.77028 0.80309 0.82831 1.20050 1.21226 1.20011 1.22176 0.88170 0.95370 1.01415 1.22291 1.00707 0.92926 0.89520 1.67887 1.07788 1.30384 1.19833 0.89499 0.89667 0.89951 0.83263 0.73239 0.89262 0.91238 0.94480 0.88284 0.89893 0.94263 0.94135 0.94390 0.98003 0.97953 0.92697 0.89465 0.93986 0.92513 0.88610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.58 10.21 36.01 0.37 -0.21 16 2 C 0.21 2.05 6.82 -82.33 -0.56 1.49 16 3 C -0.28 -2.58 9.80 -39.15 -0.38 -2.97 16 4 C 0.39 4.55 7.83 -16.72 -0.13 4.41 16 5 O -0.48 -4.69 13.57 -18.22 -0.25 -4.94 16 6 N -0.57 -8.19 8.72 -13.99 -0.12 -8.31 16 7 C 0.53 7.44 7.17 -322.86 -2.31 5.12 16 8 N -0.46 -6.44 4.77 -175.24 -0.84 -7.28 16 9 C 0.07 1.10 4.76 -3.76 -0.02 1.08 16 10 C 0.05 0.79 5.13 -3.77 -0.02 0.77 16 11 N -0.53 -8.13 4.73 -234.46 -1.11 -9.24 16 12 C 0.06 0.95 5.53 -3.82 -0.02 0.93 16 13 C 0.06 1.11 5.58 37.16 0.21 1.32 16 14 O -0.38 -9.25 10.24 -35.23 -0.36 -9.61 16 15 C 0.19 5.41 5.69 36.00 0.20 5.62 16 16 C -0.51 -15.36 9.43 -34.44 -0.32 -15.68 16 17 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 20 Si 0.91 22.41 29.54 -169.99 -5.02 17.39 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.06 0.71 5.62 -3.77 -0.02 0.69 16 25 C 0.07 0.92 5.46 -3.76 -0.02 0.90 16 26 N -0.54 -6.74 9.66 -10.22 -0.10 -6.84 16 27 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.30 8.09 -51.93 -0.42 -0.12 16 30 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.41 1.81 9.06 45.56 0.41 2.22 16 32 H 0.09 1.29 7.80 -51.93 -0.41 0.88 16 33 H 0.07 1.21 8.03 -51.93 -0.42 0.79 16 34 H 0.04 0.51 8.14 -51.92 -0.42 0.09 16 35 H 0.10 1.66 5.95 -51.93 -0.31 1.35 16 36 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.04 0.50 8.14 -51.92 -0.42 0.07 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.04 0.68 6.09 -51.93 -0.32 0.36 16 40 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 41 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.10 1.10 7.65 -51.93 -0.40 0.71 16 LS Contribution 376.73 15.07 5.68 5.68 Total: -1.00 -35.84 376.73 -10.98 -46.83 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -6.47 Total: -2.02 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -3.13 Total: 5.01 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: -1.43 Total: -58.34 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.61 Total: -14.55 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.84 -10.98 -46.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886657708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.923 kcal (2) G-P(sol) polarization free energy of solvation -35.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds