Wall clock time and date at job start Tue Mar 31 2020 04:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38240 * 120.36395 * 2 1 4 4 C 1.39404 * 118.50456 * 179.97438 * 3 2 1 5 5 O 1.35508 * 120.46327 * 180.02562 * 4 3 2 6 6 N 1.32749 * 119.07071 * 359.97438 * 4 3 2 7 7 C 1.32464 * 120.64555 * 0.02562 * 6 4 3 8 8 N 1.38393 * 119.18810 * 179.97438 * 7 6 4 9 9 C 1.46965 * 111.00057 * 0.02562 * 8 7 6 10 10 C 1.53050 * 109.38086 * 183.17551 * 9 8 7 11 11 N 1.46957 * 109.36564 * 301.63124 * 10 9 8 12 12 C 1.46902 * 110.99867 * 183.16840 * 11 10 9 13 13 C 1.52998 * 109.46926 * 52.41687 * 12 11 10 14 14 O 1.42895 * 109.47221 * 62.59777 * 13 12 11 15 15 C 1.42900 * 114.00279 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47414 * 180.02562 * 15 14 13 17 17 H 1.08007 * 119.99554 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00100 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00082 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99965 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46676 * 60.00629 * 20 18 16 22 22 H 1.48504 * 109.47088 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47255 * 300.00703 * 20 18 16 24 24 C 1.46957 * 110.89949 * 59.28999 * 11 10 9 25 25 C 1.46962 * 111.00237 * 123.80028 * 8 7 6 26 26 N 1.32431 * 120.36615 * 180.25288 * 2 1 3 27 27 H 1.09007 * 109.46991 * 89.99934 * 1 2 3 28 28 H 1.08996 * 109.47074 * 209.99416 * 1 2 3 29 29 H 1.08996 * 109.47106 * 330.00284 * 1 2 3 30 30 H 1.07996 * 120.75003 * 359.97067 * 3 2 1 31 31 H 0.96708 * 114.00064 * 269.97796 * 5 4 3 32 32 H 1.08997 * 109.48279 * 303.15549 * 9 8 7 33 33 H 1.08995 * 109.48640 * 63.19410 * 9 8 7 34 34 H 1.09010 * 109.48680 * 61.57893 * 10 9 8 35 35 H 1.08999 * 109.48810 * 181.63669 * 10 9 8 36 36 H 1.08991 * 109.46972 * 172.42164 * 12 11 10 37 37 H 1.09008 * 109.46943 * 292.41600 * 12 11 10 38 38 H 1.08999 * 109.46806 * 182.59770 * 13 12 11 39 39 H 1.08999 * 109.47211 * 302.59505 * 13 12 11 40 40 H 1.09007 * 109.47130 * 299.99959 * 15 14 13 41 41 H 1.08997 * 109.46899 * 59.99878 * 15 14 13 42 42 H 0.96998 * 120.00047 * 179.97438 * 19 18 16 43 43 H 1.08995 * 109.48926 * 180.72478 * 24 11 10 44 44 H 1.09003 * 109.50801 * 60.66666 * 24 11 10 45 45 H 1.08999 * 109.48364 * 296.78250 * 25 8 7 46 46 H 1.09001 * 109.48272 * 56.81825 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2058 1.1928 0.0000 4 6 3.5991 1.1475 0.0005 5 8 4.3236 2.2927 0.0011 6 7 4.2061 -0.0330 0.0016 7 6 3.5014 -1.1546 0.0016 8 7 4.1653 -2.3689 0.0021 9 6 5.6218 -2.1728 0.0032 10 6 6.3176 -3.5337 -0.0762 11 7 5.8993 -4.3621 1.0633 12 6 6.6041 -5.6510 1.0639 13 6 8.1117 -5.4079 0.9704 14 8 8.5495 -4.6827 2.1212 15 6 9.9507 -4.4024 2.1333 16 6 10.2996 -3.6392 3.3850 17 1 9.5284 -3.3931 4.1001 18 6 11.6034 -3.2559 3.6180 19 7 12.5425 -3.5560 2.7475 20 14 12.0357 -2.3092 5.1692 21 1 11.6828 -3.1231 6.3602 22 1 13.4918 -2.0181 5.1818 23 1 11.2760 -1.0337 5.1985 24 6 4.4429 -4.5582 1.0622 25 6 3.7479 -3.1969 1.1422 26 7 2.1765 -1.1426 -0.0050 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3633 0.8900 0.5138 30 1 1.6841 2.1384 -0.0005 31 1 4.5346 2.6251 -0.8822 32 1 5.9078 -1.5673 -0.8568 33 1 5.9196 -1.6650 0.9206 34 1 6.0413 -4.0296 -1.0068 35 1 7.3979 -3.3921 -0.0462 36 1 6.3789 -6.1877 1.9854 37 1 6.2779 -6.2438 0.2093 38 1 8.6318 -6.3647 0.9244 39 1 8.3317 -4.8311 0.0721 40 1 10.5087 -5.3386 2.1117 41 1 10.2093 -3.8050 1.2591 42 1 13.4596 -3.2860 2.9112 43 1 4.1568 -5.1636 1.9222 44 1 4.1447 -5.0658 0.1448 45 1 4.0248 -2.7009 2.0725 46 1 2.6674 -3.3378 1.1129 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886657708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:48 Heat of formation + Delta-G solvation = -33.830320 kcal Electronic energy + Delta-G solvation = -27261.228934 eV Core-core repulsion = 23379.253009 eV Total energy + Delta-G solvation = -3881.975924 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.48499 -40.49840 -38.92434 -38.37846 -36.76047 -34.97651 -34.67321 -32.67415 -32.15179 -30.84388 -29.35746 -28.99349 -27.10512 -25.11274 -24.49186 -24.30016 -23.29151 -22.50338 -20.89759 -19.87375 -18.89275 -18.60801 -18.26770 -17.41416 -17.04720 -16.81807 -16.51835 -16.43370 -16.02803 -15.94698 -15.77206 -15.49027 -15.24333 -14.95671 -14.74900 -14.37804 -13.85173 -13.75486 -13.42611 -13.38935 -13.19481 -13.03133 -12.91670 -12.76307 -12.59531 -12.54001 -12.39627 -12.15961 -11.99437 -11.83861 -11.58073 -11.40638 -11.25351 -11.06444 -10.84492 -10.32520 -10.16540 -9.59541 -9.21822 -8.32066 -6.43545 -0.22737 -0.04717 1.37814 1.42864 1.51069 1.92604 2.33541 2.34252 2.58692 2.83806 3.01421 3.25320 3.27555 3.46876 3.77862 3.89644 4.01174 4.04941 4.13690 4.16389 4.23266 4.29320 4.32481 4.41551 4.45034 4.55169 4.66511 4.73766 4.77125 4.80255 4.80684 4.85144 4.89153 4.89875 4.99595 5.04122 5.20180 5.30003 5.41525 5.55178 5.60430 5.97406 6.02678 6.11493 6.15101 6.48963 6.57208 6.86736 7.02973 7.28441 8.80049 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013167 B = 0.002895 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.955993 B = 9669.613454 C =11135.306098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.203 3.797 3 C -0.264 4.264 4 C 0.371 3.629 5 O -0.485 6.485 6 N -0.608 5.608 7 C 0.507 3.493 8 N -0.461 5.461 9 C 0.088 3.912 10 C 0.061 3.939 11 N -0.554 5.554 12 C 0.073 3.927 13 C 0.050 3.950 14 O -0.394 6.394 15 C 0.211 3.789 16 C -0.545 4.545 17 H 0.057 0.943 18 C 0.006 3.994 19 N -0.930 5.930 20 Si 0.980 3.020 21 H -0.264 1.264 22 H -0.273 1.273 23 H -0.269 1.269 24 C 0.063 3.937 25 C 0.077 3.923 26 N -0.549 5.549 27 H 0.104 0.896 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.185 0.815 31 H 0.428 0.572 32 H 0.087 0.913 33 H 0.034 0.966 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.050 0.950 39 H 0.041 0.959 40 H -0.015 1.015 41 H -0.018 1.018 42 H 0.271 0.729 43 H 0.103 0.897 44 H 0.058 0.942 45 H 0.033 0.967 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.831 6.509 -9.939 29.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.057 3.943 3 C -0.288 4.288 4 C 0.184 3.816 5 O -0.296 6.296 6 N -0.340 5.340 7 C 0.151 3.849 8 N -0.181 5.181 9 C -0.040 4.040 10 C -0.067 4.067 11 N -0.280 5.280 12 C -0.054 4.054 13 C -0.028 4.028 14 O -0.314 6.314 15 C 0.135 3.865 16 C -0.583 4.583 17 H 0.076 0.924 18 C -0.192 4.192 19 N -0.570 5.570 20 Si 0.803 3.197 21 H -0.189 1.189 22 H -0.197 1.197 23 H -0.194 1.194 24 C -0.065 4.065 25 C -0.049 4.049 26 N -0.271 5.271 27 H 0.122 0.878 28 H 0.102 0.898 29 H 0.126 0.874 30 H 0.203 0.797 31 H 0.291 0.709 32 H 0.105 0.895 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.003 0.997 41 H 0.000 1.000 42 H 0.079 0.921 43 H 0.121 0.879 44 H 0.076 0.924 45 H 0.051 0.949 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -26.279 5.694 -9.243 28.433 hybrid contribution 1.020 1.209 -0.361 1.622 sum -25.260 6.903 -9.604 27.891 Atomic orbital electron populations 1.20929 0.84089 1.05462 1.05190 1.22256 0.99356 0.86284 0.86413 1.22905 0.93304 1.02575 1.10047 1.19606 0.88254 0.84627 0.89139 1.84686 1.74385 1.34279 1.36259 1.67828 1.44059 0.99652 1.22478 1.20850 0.86647 0.87860 0.89588 1.58784 1.07456 1.09945 1.41905 1.21892 0.83295 0.96949 1.01843 1.22165 0.99641 0.92702 0.92220 1.62030 1.06066 1.16545 1.43338 1.22068 0.90657 0.89976 1.02699 1.22708 0.95562 0.95371 0.89110 1.87922 1.25265 1.75682 1.42501 1.19762 0.77614 0.93285 0.95796 1.21340 0.94253 1.36498 1.06202 0.92431 1.25929 0.95442 0.96818 1.01000 1.70058 1.01971 1.47420 1.37519 0.85285 0.77347 0.78760 0.78329 1.18913 1.19737 1.19425 1.22217 0.86047 0.95332 1.02869 1.22283 1.01548 0.92798 0.88297 1.67942 1.06934 1.31897 1.20321 0.87799 0.89764 0.87383 0.79744 0.70907 0.89460 0.94746 0.92762 0.90906 0.89578 0.90757 0.93182 0.94060 0.99733 1.00047 0.92064 0.87867 0.92394 0.94871 0.87056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 10.21 71.24 0.73 -0.06 16 2 C 0.20 3.54 6.82 42.47 0.29 3.83 16 3 C -0.26 -4.33 9.80 22.55 0.22 -4.11 16 4 C 0.37 8.53 7.83 84.84 0.66 9.19 16 5 O -0.49 -9.34 13.57 -88.10 -1.20 -10.54 16 6 N -0.61 -17.94 8.72 -310.89 -2.71 -20.65 16 7 C 0.51 14.49 7.17 261.50 1.87 16.37 16 8 N -0.46 -13.10 4.77 -708.33 -3.38 -16.48 16 9 C 0.09 2.77 4.76 86.31 0.41 3.18 16 10 C 0.06 1.87 5.13 86.31 0.44 2.32 16 11 N -0.55 -17.01 4.73 -895.70 -4.23 -21.24 16 12 C 0.07 2.12 5.53 86.30 0.48 2.60 16 13 C 0.05 1.86 5.58 71.98 0.40 2.26 16 14 O -0.39 -19.91 10.24 -148.98 -1.52 -21.43 16 15 C 0.21 12.24 5.69 71.24 0.41 12.65 16 16 C -0.55 -33.78 9.43 25.60 0.24 -33.54 16 17 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 18 C 0.01 0.39 5.46 84.65 0.46 0.85 16 19 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16 20 Si 0.98 46.09 29.54 68.60 2.03 48.11 16 21 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 24 C 0.06 1.49 5.62 86.31 0.49 1.97 16 25 C 0.08 1.96 5.46 86.31 0.47 2.43 16 26 N -0.55 -13.33 9.66 -186.24 -1.80 -15.12 16 27 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 28 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.11 0.33 8.09 -2.39 -0.02 0.31 16 30 H 0.19 1.60 8.06 -2.91 -0.02 1.57 16 31 H 0.43 3.54 9.06 -74.05 -0.67 2.87 16 32 H 0.09 2.70 7.80 -2.39 -0.02 2.68 16 33 H 0.03 1.30 8.03 -2.39 -0.02 1.28 16 34 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.07 2.59 5.95 -2.39 -0.01 2.58 16 36 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.04 1.52 6.09 -2.39 -0.01 1.51 16 40 H -0.02 -0.90 8.14 -2.38 -0.02 -0.92 16 41 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 42 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 43 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.11 2.46 7.65 -2.39 -0.02 2.45 16 Total: -1.00 -79.98 376.73 -4.64 -84.62 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 0.32 Total: 9.88 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: 7.57 Total: 19.93 kcal Atomic # 7 Polarization: -118.74 SS G_CDS: -11.84 Total: -130.57 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -2.72 Total: -31.97 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -79.98 -4.64 -84.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886657708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.791 kcal (2) G-P(sol) polarization free energy of solvation -79.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds