Wall clock time and date at job start Tue Mar 31 2020 04:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 119.99676 * 2 1 4 4 H 1.48504 * 109.47148 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47266 * 300.00059 * 3 2 1 6 6 H 1.48501 * 109.47089 * 60.00225 * 3 2 1 7 7 C 1.38807 * 120.00520 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00044 * 197.45808 * 7 2 1 9 9 N 1.36935 * 120.00204 * 17.44755 * 7 2 1 10 10 C 1.46924 * 120.59623 * 207.91288 * 9 7 2 11 11 C 1.53303 * 108.71742 * 234.32908 * 10 9 7 12 12 C 1.52270 * 109.46767 * 306.49887 * 11 10 9 13 13 C 1.54526 * 110.20058 * 296.93685 * 12 11 10 14 14 C 1.55023 * 101.53238 * 276.40813 * 13 12 11 15 15 N 1.47479 * 104.90064 * 323.61547 * 14 13 12 16 16 C 1.34786 * 125.66359 * 204.04276 * 15 14 13 17 17 O 1.21273 * 120.00101 * 179.97438 * 16 15 14 18 18 C 1.50703 * 119.99710 * 359.97438 * 16 15 14 19 19 H 1.09006 * 110.48790 * 40.69918 * 18 16 15 20 20 C 1.54098 * 110.54732 * 277.99898 * 18 16 15 21 21 N 1.47054 * 103.86232 * 241.40533 * 20 18 16 22 22 C 1.33950 * 109.17858 * 0.02562 * 21 20 18 23 23 O 1.21591 * 123.04288 * 180.02562 * 22 21 20 24 24 N 1.34259 * 113.96315 * 359.91432 * 22 21 20 25 25 C 1.47175 * 108.67792 * 24.02781 * 15 14 13 26 26 C 1.52277 * 111.28610 * 59.49473 * 12 11 10 27 27 C 1.46946 * 120.58456 * 27.94209 * 9 7 2 28 28 H 0.96994 * 120.00269 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.59406 * 114.55627 * 10 9 7 30 30 H 1.09006 * 109.72491 * 354.17454 * 10 9 7 31 31 H 1.08996 * 109.47371 * 66.49766 * 11 10 9 32 32 H 1.08999 * 109.47041 * 186.50301 * 11 10 9 33 33 H 1.08994 * 111.01356 * 34.47039 * 13 12 11 34 34 H 1.09005 * 111.01453 * 158.34394 * 13 12 11 35 35 H 1.09002 * 110.35280 * 204.76293 * 14 13 12 36 36 H 1.08994 * 110.44765 * 82.52323 * 14 13 12 37 37 H 1.08996 * 110.55041 * 0.02562 * 20 18 16 38 38 H 1.09002 * 110.54839 * 122.81305 * 20 18 16 39 39 H 0.96995 * 125.41388 * 180.02562 * 21 20 18 40 40 H 0.96996 * 125.58693 * 180.02562 * 24 22 21 41 41 H 1.09002 * 109.90614 * 239.11637 * 25 15 14 42 42 H 1.09000 * 110.06556 * 117.94006 * 25 15 14 43 43 H 1.09007 * 109.46820 * 180.49797 * 26 12 11 44 44 H 1.09000 * 109.47394 * 60.49951 * 26 12 11 45 45 H 1.08999 * 109.59605 * 245.43531 * 27 9 7 46 46 H 1.09001 * 109.59851 * 5.89939 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0531 -1.2236 0.2801 9 7 1.3731 -2.3606 -0.3566 10 6 1.8170 -3.6539 0.1810 11 6 2.0944 -4.6041 -0.9896 12 6 0.8709 -4.6661 -1.8939 13 6 -0.3327 -5.2542 -1.1235 14 6 -0.0814 -6.7767 -1.2715 15 7 0.4764 -6.9391 -2.6270 16 6 0.4287 -8.0649 -3.3667 17 8 0.9224 -8.0841 -4.4743 18 6 -0.2380 -9.2997 -2.8174 19 1 -1.1527 -9.0354 -2.2866 20 6 0.7239 -10.0661 -1.8888 21 7 0.8794 -11.3733 -2.5441 22 6 0.1460 -11.3938 -3.6648 23 8 0.0909 -12.3580 -4.4035 24 7 -0.5250 -10.2546 -3.8983 25 6 1.0933 -5.6678 -3.0383 26 6 0.5208 -3.2906 -2.4454 27 6 0.2334 -2.3324 -1.2838 28 1 -0.4850 0.8400 -0.0004 29 1 1.0362 -4.0734 0.8153 30 1 2.7275 -3.5168 0.7643 31 1 2.9490 -4.2391 -1.5592 32 1 2.3128 -5.6003 -0.6050 33 1 -0.3104 -4.9543 -0.0759 34 1 -1.2744 -4.9662 -1.5909 35 1 -1.0181 -7.3264 -1.1786 36 1 0.6339 -7.1190 -0.5237 37 1 1.6836 -9.5532 -1.8248 38 1 0.2858 -10.1846 -0.8978 39 1 1.4262 -12.1046 -2.2169 40 1 -1.1048 -10.0865 -4.6575 41 1 0.6185 -5.3023 -3.9489 42 1 2.1610 -5.8075 -3.2070 43 1 -0.3622 -3.3676 -3.0799 44 1 1.3574 -2.9104 -3.0316 45 1 -0.6698 -2.6500 -0.7627 46 1 0.0998 -1.3213 -1.6684 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040825708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:14 Heat of formation + Delta-G solvation = -20.647160 kcal Electronic energy + Delta-G solvation = -28251.228817 eV Core-core repulsion = 24369.824558 eV Total energy + Delta-G solvation = -3881.404260 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.63816 -40.25961 -38.57875 -36.46724 -35.99790 -33.35275 -33.25404 -31.16999 -30.21321 -29.73064 -29.38095 -26.99519 -24.69748 -23.74051 -23.05331 -22.29032 -22.10134 -21.00467 -19.72304 -18.44612 -18.14258 -17.56387 -16.68978 -16.43499 -16.22852 -16.11512 -15.23598 -14.94738 -14.83621 -14.29818 -14.21109 -14.06732 -13.79162 -13.66495 -13.49871 -13.20599 -12.95516 -12.85691 -12.62162 -12.41769 -12.24097 -11.59102 -11.39490 -11.21379 -10.87254 -10.75839 -10.62292 -10.54430 -10.46477 -10.31217 -10.17893 -9.92255 -9.74184 -9.62470 -9.51812 -9.18221 -8.80108 -8.51761 -6.73553 -5.85791 -3.27704 2.16451 2.41276 2.64720 2.96092 3.32683 3.41520 3.43042 3.61560 3.85726 4.04813 4.38393 4.44243 4.57907 4.71093 4.81639 4.95298 5.02444 5.14700 5.18957 5.27115 5.32677 5.37197 5.55520 5.66694 5.79422 5.86894 5.94748 6.02445 6.09671 6.10164 6.24767 6.42365 6.54280 6.57429 6.63423 6.63884 6.74786 6.80393 6.87901 7.00887 7.27802 7.31056 7.58571 7.74251 7.86948 8.30115 8.38662 9.15010 9.78430 10.34109 11.22544 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.041001 B = 0.002544 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.750751 B =11005.536651 C =11122.511541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.146 3.854 11 C -0.119 4.119 12 C -0.055 4.055 13 C -0.123 4.123 14 C 0.093 3.907 15 N -0.608 5.608 16 C 0.513 3.487 17 O -0.527 6.527 18 C 0.106 3.894 19 H 0.116 0.884 20 C 0.106 3.894 21 N -0.738 5.738 22 C 0.706 3.294 23 O -0.584 6.584 24 N -0.715 5.715 25 C 0.115 3.885 26 C -0.127 4.127 27 C 0.173 3.827 28 H 0.253 0.747 29 H 0.020 0.980 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.433 0.567 40 H 0.435 0.565 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.051 0.949 44 H 0.057 0.943 45 H 0.020 0.980 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.098 -16.795 -0.010 16.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.730 3.270 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.020 3.980 11 C -0.159 4.159 12 C -0.056 4.056 13 C -0.161 4.161 14 C -0.029 4.029 15 N -0.343 5.343 16 C 0.298 3.702 17 O -0.403 6.403 18 C -0.004 4.004 19 H 0.134 0.866 20 C -0.020 4.020 21 N -0.402 5.402 22 C 0.405 3.595 23 O -0.462 6.462 24 N -0.378 5.378 25 C -0.007 4.007 26 C -0.167 4.167 27 C 0.047 3.953 28 H 0.063 0.937 29 H 0.037 0.963 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.275 0.725 40 H 0.277 0.723 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.038 0.962 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.961 -17.214 -1.019 17.356 hybrid contribution 0.397 0.930 -0.085 1.015 sum -1.564 -16.284 -1.104 16.396 Atomic orbital electron populations 1.70026 1.05245 1.25441 1.53949 1.25017 0.95265 0.98405 1.00894 0.86264 0.79428 0.84027 0.77295 1.20273 1.21553 1.21747 1.19212 0.92745 0.84921 1.41283 0.91713 1.44044 1.36261 1.01355 1.49704 1.20935 0.97527 0.86958 0.92595 1.21933 0.96304 0.99119 0.98503 1.20987 0.95816 0.94903 0.93891 1.22881 0.98626 0.91800 1.02775 1.22575 0.98211 0.98902 0.83252 1.48637 1.56827 1.11337 1.17468 1.20344 0.80886 0.83503 0.85450 1.90760 1.46424 1.83421 1.19657 1.21831 0.99841 0.89473 0.89275 0.86624 1.22229 0.99808 0.83710 0.96231 1.45035 1.52135 1.17191 1.25808 1.15925 0.78703 0.83207 0.81645 1.91004 1.68915 1.35411 1.50852 1.44905 1.51669 1.13193 1.28006 1.22197 0.97990 0.82172 0.98328 1.22122 1.00194 0.94189 1.00172 1.20793 0.88660 0.98307 0.87536 0.93674 0.96263 0.92838 0.92063 0.93106 0.88671 0.90623 0.90784 0.90785 0.89458 0.88465 0.72509 0.72290 0.91397 0.91473 0.93060 0.92377 0.96184 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.87 11.20 55.49 0.62 -24.25 16 2 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 3 Si 0.90 20.88 29.59 -169.99 -5.03 15.85 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.25 -6.51 9.58 -15.06 -0.14 -6.65 16 8 H 0.07 1.66 7.89 -52.49 -0.41 1.25 16 9 N -0.59 -13.42 2.98 -172.17 -0.51 -13.93 16 10 C 0.15 2.65 6.18 -3.65 -0.02 2.63 16 11 C -0.12 -1.74 4.73 -26.95 -0.13 -1.86 16 12 C -0.06 -0.75 0.55 -154.09 -0.08 -0.84 16 13 C -0.12 -1.41 4.94 -24.86 -0.12 -1.53 16 14 C 0.09 0.76 6.37 -2.44 -0.02 0.75 16 15 N -0.61 -6.48 3.33 -170.67 -0.57 -7.05 16 16 C 0.51 5.84 6.96 -10.98 -0.08 5.76 16 17 O -0.53 -8.40 16.91 5.56 0.09 -8.30 16 18 C 0.11 0.83 3.54 -68.20 -0.24 0.59 16 19 H 0.12 0.57 7.00 -51.93 -0.36 0.21 16 20 C 0.11 0.63 7.70 -3.17 -0.02 0.61 16 21 N -0.74 -6.02 6.37 -64.62 -0.41 -6.43 16 22 C 0.71 8.49 8.92 -88.12 -0.79 7.70 16 23 O -0.58 -9.48 18.05 5.29 0.10 -9.39 16 24 N -0.72 -7.16 5.64 -59.24 -0.33 -7.49 16 25 C 0.12 1.48 6.05 -3.31 -0.02 1.46 16 26 C -0.13 -2.12 4.71 -26.95 -0.13 -2.25 16 27 C 0.17 3.69 5.04 -3.64 -0.02 3.67 16 28 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 29 H 0.02 0.34 6.49 -51.93 -0.34 0.01 16 30 H 0.05 0.98 7.94 -51.93 -0.41 0.57 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.05 0.62 7.47 -51.93 -0.39 0.23 16 33 H 0.09 1.19 6.10 -51.93 -0.32 0.87 16 34 H 0.08 0.88 8.00 -51.93 -0.42 0.47 16 35 H 0.07 0.41 6.97 -51.93 -0.36 0.05 16 36 H 0.07 0.51 7.75 -51.93 -0.40 0.11 16 37 H 0.09 0.54 7.72 -51.93 -0.40 0.14 16 38 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.43 2.67 8.96 -40.82 -0.37 2.31 16 40 H 0.43 4.06 8.96 -40.82 -0.37 3.70 16 41 H 0.07 0.94 7.78 -51.93 -0.40 0.53 16 42 H 0.07 0.91 7.83 -51.93 -0.41 0.51 16 43 H 0.05 0.78 8.11 -51.93 -0.42 0.36 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 46 H 0.09 2.18 6.02 -51.93 -0.31 1.87 16 LS Contribution 356.87 15.07 5.38 5.38 Total: -1.00 -34.18 356.87 -9.45 -43.63 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.88 Total: 1.97 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: -1.90 Total: 10.02 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -1.21 Total: -59.15 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: 0.19 Total: -17.69 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.18 -9.45 -43.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040825708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.978 kcal (2) G-P(sol) polarization free energy of solvation -34.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds