Wall clock time and date at job start Tue Mar 31 2020 04:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 119.99676 * 2 1 4 4 H 1.48504 * 109.47148 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47266 * 300.00059 * 3 2 1 6 6 H 1.48501 * 109.47089 * 60.00225 * 3 2 1 7 7 C 1.38807 * 120.00520 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00044 * 197.45808 * 7 2 1 9 9 N 1.36935 * 120.00204 * 17.44755 * 7 2 1 10 10 C 1.46924 * 120.59623 * 207.91288 * 9 7 2 11 11 C 1.53303 * 108.71742 * 234.32908 * 10 9 7 12 12 C 1.52270 * 109.46767 * 306.49887 * 11 10 9 13 13 C 1.54526 * 110.20058 * 296.93685 * 12 11 10 14 14 C 1.55023 * 101.53238 * 276.40813 * 13 12 11 15 15 N 1.47479 * 104.90064 * 323.61547 * 14 13 12 16 16 C 1.34786 * 125.66359 * 204.04276 * 15 14 13 17 17 O 1.21273 * 120.00101 * 179.97438 * 16 15 14 18 18 C 1.50703 * 119.99710 * 359.97438 * 16 15 14 19 19 H 1.09006 * 110.48790 * 40.69918 * 18 16 15 20 20 C 1.54098 * 110.54732 * 277.99898 * 18 16 15 21 21 N 1.47054 * 103.86232 * 241.40533 * 20 18 16 22 22 C 1.33950 * 109.17858 * 0.02562 * 21 20 18 23 23 O 1.21591 * 123.04288 * 180.02562 * 22 21 20 24 24 N 1.34259 * 113.96315 * 359.91432 * 22 21 20 25 25 C 1.47175 * 108.67792 * 24.02781 * 15 14 13 26 26 C 1.52277 * 111.28610 * 59.49473 * 12 11 10 27 27 C 1.46946 * 120.58456 * 27.94209 * 9 7 2 28 28 H 0.96994 * 120.00269 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.59406 * 114.55627 * 10 9 7 30 30 H 1.09006 * 109.72491 * 354.17454 * 10 9 7 31 31 H 1.08996 * 109.47371 * 66.49766 * 11 10 9 32 32 H 1.08999 * 109.47041 * 186.50301 * 11 10 9 33 33 H 1.08994 * 111.01356 * 34.47039 * 13 12 11 34 34 H 1.09005 * 111.01453 * 158.34394 * 13 12 11 35 35 H 1.09002 * 110.35280 * 204.76293 * 14 13 12 36 36 H 1.08994 * 110.44765 * 82.52323 * 14 13 12 37 37 H 1.08996 * 110.55041 * 0.02562 * 20 18 16 38 38 H 1.09002 * 110.54839 * 122.81305 * 20 18 16 39 39 H 0.96995 * 125.41388 * 180.02562 * 21 20 18 40 40 H 0.96996 * 125.58693 * 180.02562 * 24 22 21 41 41 H 1.09002 * 109.90614 * 239.11637 * 25 15 14 42 42 H 1.09000 * 110.06556 * 117.94006 * 25 15 14 43 43 H 1.09007 * 109.46820 * 180.49797 * 26 12 11 44 44 H 1.09000 * 109.47394 * 60.49951 * 26 12 11 45 45 H 1.08999 * 109.59605 * 245.43531 * 27 9 7 46 46 H 1.09001 * 109.59851 * 5.89939 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0531 -1.2236 0.2801 9 7 1.3731 -2.3606 -0.3566 10 6 1.8170 -3.6539 0.1810 11 6 2.0944 -4.6041 -0.9896 12 6 0.8709 -4.6661 -1.8939 13 6 -0.3327 -5.2542 -1.1235 14 6 -0.0814 -6.7767 -1.2715 15 7 0.4764 -6.9391 -2.6270 16 6 0.4287 -8.0649 -3.3667 17 8 0.9224 -8.0841 -4.4743 18 6 -0.2380 -9.2997 -2.8174 19 1 -1.1527 -9.0354 -2.2866 20 6 0.7239 -10.0661 -1.8888 21 7 0.8794 -11.3733 -2.5441 22 6 0.1460 -11.3938 -3.6648 23 8 0.0909 -12.3580 -4.4035 24 7 -0.5250 -10.2546 -3.8983 25 6 1.0933 -5.6678 -3.0383 26 6 0.5208 -3.2906 -2.4454 27 6 0.2334 -2.3324 -1.2838 28 1 -0.4850 0.8400 -0.0004 29 1 1.0362 -4.0734 0.8153 30 1 2.7275 -3.5168 0.7643 31 1 2.9490 -4.2391 -1.5592 32 1 2.3128 -5.6003 -0.6050 33 1 -0.3104 -4.9543 -0.0759 34 1 -1.2744 -4.9662 -1.5909 35 1 -1.0181 -7.3264 -1.1786 36 1 0.6339 -7.1190 -0.5237 37 1 1.6836 -9.5532 -1.8248 38 1 0.2858 -10.1846 -0.8978 39 1 1.4262 -12.1046 -2.2169 40 1 -1.1048 -10.0865 -4.6575 41 1 0.6185 -5.3023 -3.9489 42 1 2.1610 -5.8075 -3.2070 43 1 -0.3622 -3.3676 -3.0799 44 1 1.3574 -2.9104 -3.0316 45 1 -0.6698 -2.6500 -0.7627 46 1 0.0998 -1.3213 -1.6684 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040825708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:13 Heat of formation + Delta-G solvation = -47.802367 kcal Electronic energy + Delta-G solvation = -28252.406355 eV Core-core repulsion = 24369.824558 eV Total energy + Delta-G solvation = -3882.581798 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.40140 -41.26054 -39.67154 -37.47006 -37.25525 -34.76501 -34.01539 -32.74446 -31.62382 -30.54917 -30.42786 -28.32358 -25.98654 -24.84307 -23.99239 -23.59368 -22.84625 -22.45910 -20.57006 -19.70649 -18.89518 -18.75128 -17.90371 -17.43095 -17.07516 -16.97097 -16.78436 -16.09906 -15.76376 -15.65725 -15.28001 -15.09811 -14.99297 -14.88433 -14.57807 -14.34276 -14.13477 -13.77022 -13.64717 -13.43633 -13.19721 -13.10304 -12.97394 -12.57700 -12.49539 -12.24834 -12.03074 -11.86507 -11.72658 -11.58152 -11.41373 -11.35207 -11.02602 -11.00959 -10.55810 -10.47375 -9.84306 -9.67377 -8.60000 -7.84243 -5.27014 1.37109 1.45707 1.49478 1.57937 1.62496 1.92016 2.12313 2.53307 3.02056 3.26736 3.30392 3.33896 3.65548 3.71755 3.81160 3.86880 3.96932 4.30970 4.31707 4.36697 4.48041 4.60148 4.62811 4.65591 4.72723 4.74064 4.82518 4.83423 4.93940 4.98529 5.06882 5.17175 5.24723 5.33245 5.37846 5.45333 5.51146 5.61866 5.71139 5.85793 5.89467 6.20188 6.27205 6.44138 6.49727 7.02578 7.20595 7.50507 7.94251 8.42824 9.21234 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.041001 B = 0.002544 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.750751 B =11005.536651 C =11122.511541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.049 4.049 3 Si 0.957 3.043 4 H -0.270 1.270 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.256 4.256 8 H 0.062 0.938 9 N -0.610 5.610 10 C 0.143 3.857 11 C -0.106 4.106 12 C -0.052 4.052 13 C -0.122 4.122 14 C 0.097 3.903 15 N -0.603 5.603 16 C 0.512 3.488 17 O -0.581 6.581 18 C 0.111 3.889 19 H 0.159 0.841 20 C 0.105 3.895 21 N -0.728 5.728 22 C 0.695 3.305 23 O -0.638 6.638 24 N -0.717 5.717 25 C 0.123 3.877 26 C -0.116 4.116 27 C 0.182 3.818 28 H 0.248 0.752 29 H 0.033 0.967 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.146 0.854 39 H 0.441 0.559 40 H 0.434 0.566 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.041 0.959 45 H 0.010 0.990 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.216 -18.782 1.722 18.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.244 4.244 3 Si 0.786 3.214 4 H -0.194 1.194 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.387 4.387 8 H 0.080 0.920 9 N -0.334 5.334 10 C 0.018 3.982 11 C -0.145 4.145 12 C -0.052 4.052 13 C -0.160 4.160 14 C -0.024 4.024 15 N -0.335 5.335 16 C 0.300 3.700 17 O -0.461 6.461 18 C 0.002 3.998 19 H 0.177 0.823 20 C -0.019 4.019 21 N -0.391 5.391 22 C 0.394 3.606 23 O -0.520 6.520 24 N -0.378 5.378 25 C 0.000 4.000 26 C -0.156 4.156 27 C 0.057 3.943 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.133 0.867 36 H 0.120 0.880 37 H 0.108 0.892 38 H 0.164 0.836 39 H 0.285 0.715 40 H 0.276 0.724 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.059 0.941 45 H 0.028 0.972 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.059 -19.200 0.782 19.325 hybrid contribution 0.462 1.594 -0.603 1.766 sum -1.597 -17.605 0.179 17.678 Atomic orbital electron populations 1.70152 1.06369 1.25539 1.55682 1.25652 0.95964 1.01062 1.01754 0.85369 0.78717 0.80684 0.76657 1.19408 1.22069 1.21983 1.19488 0.92851 0.86393 1.39957 0.92017 1.44304 1.36347 1.02250 1.50500 1.21115 0.97445 0.85600 0.94075 1.21777 0.95961 0.99828 0.96926 1.20836 0.96788 0.93215 0.94407 1.22830 0.97139 0.94351 1.01691 1.22801 1.00902 0.96622 0.82085 1.48631 1.56235 1.10267 1.18417 1.21029 0.80013 0.84346 0.84650 1.90749 1.48809 1.84368 1.22162 1.22134 1.01646 0.87341 0.88727 0.82345 1.22582 0.99996 0.81897 0.97434 1.45035 1.50988 1.18399 1.24676 1.16253 0.79170 0.83051 0.82175 1.90956 1.70775 1.37445 1.52840 1.44972 1.51004 1.13121 1.28657 1.21880 0.97626 0.83231 0.97273 1.21917 1.00112 0.95242 0.98296 1.20543 0.88166 0.97079 0.88547 0.94260 0.94917 0.93401 0.93699 0.89409 0.89365 0.90912 0.86704 0.88034 0.89167 0.83639 0.71529 0.72390 0.92798 0.92294 0.91824 0.94062 0.97153 0.93680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.82 11.20 21.65 0.24 -52.58 16 2 C -0.05 -2.63 4.91 84.86 0.42 -2.21 16 3 Si 0.96 43.77 29.59 68.60 2.03 45.79 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 7 C -0.26 -13.42 9.58 84.03 0.81 -12.61 16 8 H 0.06 3.20 7.89 -2.91 -0.02 3.17 16 9 N -0.61 -27.89 2.98 -698.63 -2.08 -29.97 16 10 C 0.14 4.96 6.18 86.40 0.53 5.50 16 11 C -0.11 -2.83 4.73 30.45 0.14 -2.69 16 12 C -0.05 -1.31 0.55 -51.91 -0.03 -1.34 16 13 C -0.12 -2.37 4.94 31.81 0.16 -2.21 16 14 C 0.10 1.03 6.37 86.88 0.55 1.58 16 15 N -0.60 -10.51 3.33 -812.25 -2.71 -13.22 16 16 C 0.51 10.04 6.96 87.66 0.61 10.65 16 17 O -0.58 -17.86 16.91 -3.01 -0.05 -17.92 16 18 C 0.11 1.24 3.54 44.51 0.16 1.39 16 19 H 0.16 0.48 7.00 -2.38 -0.02 0.47 16 20 C 0.11 0.71 7.70 86.65 0.67 1.38 16 21 N -0.73 -9.64 6.37 -477.08 -3.04 -12.68 16 22 C 0.69 15.63 8.92 179.47 1.60 17.23 16 23 O -0.64 -20.76 18.05 -4.00 -0.07 -20.83 16 24 N -0.72 -12.78 5.64 -459.89 -2.59 -15.37 16 25 C 0.12 2.92 6.05 86.49 0.52 3.44 16 26 C -0.12 -3.88 4.71 30.46 0.14 -3.74 16 27 C 0.18 7.94 5.04 86.39 0.44 8.38 16 28 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 29 H 0.03 1.07 6.49 -2.39 -0.02 1.06 16 30 H 0.05 1.69 7.94 -2.38 -0.02 1.68 16 31 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.09 1.74 7.47 -2.39 -0.02 1.72 16 33 H 0.09 1.89 6.10 -2.39 -0.01 1.88 16 34 H 0.07 1.48 8.00 -2.38 -0.02 1.46 16 35 H 0.11 0.40 6.97 -2.39 -0.02 0.39 16 36 H 0.10 0.65 7.75 -2.39 -0.02 0.63 16 37 H 0.09 0.64 7.72 -2.39 -0.02 0.62 16 38 H 0.15 -0.28 8.14 -2.39 -0.02 -0.30 16 39 H 0.44 4.26 8.96 -92.71 -0.83 3.43 16 40 H 0.43 7.61 8.96 -92.71 -0.83 6.78 16 41 H 0.05 1.44 7.78 -2.39 -0.02 1.42 16 42 H 0.06 1.51 7.83 -2.39 -0.02 1.49 16 43 H 0.06 1.94 8.11 -2.38 -0.02 1.92 16 44 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.01 0.47 7.57 -2.39 -0.02 0.45 16 46 H 0.04 2.34 6.02 -2.39 -0.01 2.33 16 Total: -1.00 -80.10 356.87 -2.19 -82.29 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -0.64 Total: 9.73 kcal Atomic # 6 Polarization: 18.03 SS G_CDS: 6.72 Total: 24.75 kcal Atomic # 7 Polarization: -113.64 SS G_CDS: -10.18 Total: -123.82 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -0.12 Total: -38.75 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -80.10 -2.19 -82.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040825708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.492 kcal (2) G-P(sol) polarization free energy of solvation -80.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds