Wall clock time and date at job start Tue Mar 31 2020 04:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 119.99761 * 2 1 4 4 H 1.48503 * 109.47159 * 270.00102 * 3 2 1 5 5 H 1.48500 * 109.47477 * 30.00055 * 3 2 1 6 6 H 1.48501 * 109.47227 * 150.00273 * 3 2 1 7 7 C 1.38807 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99778 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00531 * 359.97438 * 7 2 1 10 10 C 1.46746 * 125.32279 * 0.02736 * 9 7 2 11 11 C 1.53934 * 106.71806 * 198.31535 * 10 9 7 12 12 H 1.08999 * 113.60664 * 208.83236 * 11 10 9 13 13 C 1.53967 * 109.24753 * 81.63248 * 11 10 9 14 14 N 1.46779 * 106.62702 * 221.80896 * 13 11 10 15 15 C 1.34777 * 125.33980 * 198.47373 * 14 13 11 16 16 O 1.21276 * 119.99714 * 180.02562 * 15 14 13 17 17 C 1.50700 * 119.99855 * 0.05533 * 15 14 13 18 18 N 1.46493 * 109.46817 * 180.02562 * 17 15 14 19 19 C 1.46379 * 119.33526 * 90.00345 * 18 17 15 20 20 C 1.53243 * 109.15528 * 209.03699 * 19 18 17 21 21 C 1.53234 * 108.56039 * 304.51480 * 20 19 18 22 22 N 1.46377 * 109.15592 * 55.47957 * 21 20 19 23 23 C 1.34141 * 119.32882 * 269.72299 * 18 17 15 24 24 O 1.21585 * 118.69525 * 359.43606 * 23 18 17 25 25 C 1.46673 * 109.31906 * 18.52311 * 14 13 11 26 26 C 1.53718 * 107.94577 * 359.45243 * 25 14 13 27 27 H 1.09001 * 112.56113 * 220.28455 * 26 25 14 28 28 C 1.46635 * 125.33134 * 179.97438 * 9 7 2 29 29 H 0.97001 * 120.00268 * 359.97438 * 1 2 3 30 30 H 1.09004 * 110.00929 * 79.00395 * 10 9 7 31 31 H 1.09001 * 110.01056 * 317.63260 * 10 9 7 32 32 H 1.08999 * 110.02768 * 341.10365 * 13 11 10 33 33 H 1.09003 * 110.02142 * 102.52219 * 13 11 10 34 34 H 1.09000 * 109.47310 * 300.00080 * 17 15 14 35 35 H 1.08997 * 109.46993 * 60.00152 * 17 15 14 36 36 H 1.09001 * 109.52122 * 328.93779 * 19 18 17 37 37 H 1.08997 * 109.52821 * 89.12643 * 19 18 17 38 38 H 1.08998 * 109.62125 * 64.23753 * 20 19 18 39 39 H 1.08994 * 109.62095 * 184.79454 * 20 19 18 40 40 H 1.09001 * 109.52599 * 175.38340 * 21 20 19 41 41 H 1.09004 * 109.53002 * 295.51305 * 21 20 19 42 42 H 0.97007 * 119.33040 * 150.95944 * 22 21 20 43 43 H 1.09002 * 109.76818 * 239.82900 * 25 14 13 44 44 H 1.08997 * 109.76979 * 119.08050 * 25 14 13 45 45 H 1.08997 * 109.75750 * 59.54837 * 28 9 7 46 46 H 1.09002 * 109.76409 * 298.83019 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1355 -2.5244 -0.0006 11 6 -0.4465 -3.9590 0.4627 12 1 -1.3772 -4.3564 0.0577 13 6 -0.3839 -4.0208 1.9999 14 7 0.3060 -5.2702 2.3423 15 6 0.2647 -5.8796 3.5437 16 8 0.8745 -6.9128 3.7209 17 6 -0.5398 -5.2774 4.6668 18 7 -0.4232 -6.1216 5.8582 19 6 0.6551 -5.8669 6.8149 20 6 1.0348 -7.1808 7.5062 21 6 -0.2248 -7.7799 8.1406 22 7 -1.2554 -7.9308 7.1121 23 6 -1.3100 -7.1089 6.0533 24 8 -2.1958 -7.2680 5.2357 25 6 1.0484 -5.7510 1.1722 26 6 0.8080 -4.7624 0.0198 27 1 0.6710 -5.2629 -0.9387 28 6 1.9377 -3.7206 -0.0016 29 1 -0.4850 0.8400 0.0004 30 1 -0.5250 -2.3645 -1.0060 31 1 -0.5772 -1.8055 0.6896 32 1 0.1749 -3.1680 2.3853 33 1 -1.3920 -4.0253 2.4145 34 1 -0.1617 -4.2798 4.8903 35 1 -1.5862 -5.2110 4.3690 36 1 1.5224 -5.4683 6.2886 37 1 0.3179 -5.1470 7.5607 38 1 1.4413 -7.8764 6.7721 39 1 1.7772 -6.9860 8.2801 40 1 0.0104 -8.7554 8.5664 41 1 -0.5875 -7.1173 8.9265 42 1 -1.9145 -8.6371 7.1999 43 1 0.6903 -6.7409 0.8897 44 1 2.1125 -5.7959 1.4037 45 1 2.5646 -3.8388 0.8822 46 1 2.5404 -3.8486 -0.9008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048917618.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:10 Heat of formation + Delta-G solvation = -18.040525 kcal Electronic energy + Delta-G solvation = -28350.982775 eV Core-core repulsion = 24469.691547 eV Total energy + Delta-G solvation = -3881.291227 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.91778 -39.92808 -38.09651 -36.54646 -35.07323 -34.80610 -32.34411 -31.26779 -30.17882 -29.90443 -28.13105 -25.86897 -25.47112 -25.13848 -23.40346 -22.61953 -20.11372 -19.72287 -19.33745 -18.80913 -17.71346 -17.34859 -17.21609 -16.71407 -15.97627 -15.70360 -15.28755 -14.75897 -14.71117 -14.40820 -14.23186 -13.96592 -13.88924 -13.65127 -13.12600 -12.99182 -12.72180 -12.41916 -12.10493 -11.83806 -11.76353 -11.65246 -11.55150 -11.49089 -11.46825 -10.96141 -10.85101 -10.38330 -10.19113 -10.16632 -10.02763 -9.91591 -9.82508 -9.63657 -9.28672 -8.71827 -8.64466 -8.30528 -6.87589 -5.73206 -3.11628 2.44099 2.83631 3.05845 3.36826 3.37707 3.42559 3.43838 3.65014 4.37331 4.44688 4.49679 4.66962 4.77935 4.92897 4.95982 5.08012 5.10159 5.16486 5.26163 5.31037 5.39515 5.43340 5.45482 5.56031 5.69412 5.77094 5.80818 5.89060 5.95969 6.08432 6.19284 6.27370 6.37368 6.39657 6.57071 6.66983 6.70645 6.83578 6.90560 7.42173 7.58413 7.67074 7.76452 7.79937 8.27315 8.36554 8.49995 9.18198 9.78394 10.41822 11.33370 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019445 B = 0.003051 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.607601 B = 9174.322763 C = 9682.406654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.224 4.224 8 H 0.077 0.923 9 N -0.601 5.601 10 C 0.171 3.829 11 C -0.122 4.122 12 H 0.088 0.912 13 C 0.108 3.892 14 N -0.608 5.608 15 C 0.512 3.488 16 O -0.545 6.545 17 C 0.117 3.883 18 N -0.604 5.604 19 C 0.115 3.885 20 C -0.153 4.153 21 C 0.111 3.889 22 N -0.738 5.738 23 C 0.717 3.283 24 O -0.597 6.597 25 C 0.122 3.878 26 C -0.109 4.109 27 H 0.094 0.906 28 C 0.144 3.856 29 H 0.253 0.747 30 H 0.020 0.980 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.413 0.587 43 H 0.060 0.940 44 H 0.066 0.934 45 H 0.025 0.975 46 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.780 -12.570 15.074 19.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.352 4.352 8 H 0.095 0.905 9 N -0.327 5.327 10 C 0.046 3.954 11 C -0.142 4.142 12 H 0.106 0.894 13 C -0.014 4.014 14 N -0.342 5.342 15 C 0.299 3.701 16 O -0.422 6.422 17 C -0.011 4.011 18 N -0.341 5.341 19 C -0.008 4.008 20 C -0.191 4.191 21 C -0.013 4.013 22 N -0.396 5.396 23 C 0.418 3.582 24 O -0.475 6.475 25 C -0.001 4.001 26 C -0.129 4.129 27 H 0.113 0.887 28 C 0.018 3.982 29 H 0.063 0.937 30 H 0.038 0.962 31 H 0.115 0.885 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.127 0.873 35 H 0.135 0.865 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.250 0.750 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.042 0.958 46 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -0.813 -12.858 14.829 19.644 hybrid contribution 0.399 0.595 -0.060 0.719 sum -0.415 -12.263 14.769 19.201 Atomic orbital electron populations 1.69853 1.04816 1.24952 1.57456 1.24772 0.95745 0.97668 1.02281 0.86090 0.78542 0.83362 0.77598 1.21637 1.21645 1.20738 1.19054 0.90513 0.82327 1.43338 0.90486 1.44232 1.01619 0.99882 1.87012 1.21395 0.84783 0.89401 0.99828 1.23248 0.97216 1.00337 0.93396 0.89371 1.22229 0.96543 0.85968 0.96699 1.48348 1.49448 1.25625 1.10813 1.20759 0.81974 0.84592 0.82780 1.90650 1.45806 1.23656 1.82117 1.21178 1.02760 0.93551 0.83567 1.46322 1.30231 1.34017 1.23498 1.21580 0.90378 0.97169 0.91667 1.22187 0.97763 0.97803 1.01395 1.21509 0.87865 1.01717 0.90249 1.44873 1.34697 1.35684 1.24343 1.15331 0.81713 0.79403 0.81773 1.90953 1.37664 1.73640 1.45264 1.21758 0.96323 0.97089 0.84960 1.22771 0.97132 0.95705 0.97245 0.88743 1.21196 0.93379 0.85587 0.98075 0.93672 0.96196 0.88455 0.89969 0.91439 0.87289 0.86546 0.89828 0.91466 0.89887 0.88634 0.90023 0.91825 0.74950 0.92204 0.91587 0.95760 0.95963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.62 10.16 55.49 0.56 -25.06 16 2 C -0.01 -0.24 5.48 -17.43 -0.10 -0.34 16 3 Si 0.91 21.38 29.55 -169.99 -5.02 16.36 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.22 -5.99 10.25 -15.06 -0.15 -6.15 16 8 H 0.08 2.02 7.83 -52.48 -0.41 1.60 16 9 N -0.60 -14.57 3.37 -171.93 -0.58 -15.15 16 10 C 0.17 3.85 4.81 -3.42 -0.02 3.83 16 11 C -0.12 -2.14 4.17 -88.35 -0.37 -2.50 16 12 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 13 C 0.11 1.76 5.86 -3.39 -0.02 1.74 16 14 N -0.61 -10.07 3.31 -172.29 -0.57 -10.64 16 15 C 0.51 8.60 7.90 -10.99 -0.09 8.51 16 16 O -0.54 -10.70 16.74 5.56 0.09 -10.61 16 17 C 0.12 1.59 4.83 -5.20 -0.03 1.56 16 18 N -0.60 -7.84 2.30 -181.16 -0.42 -8.26 16 19 C 0.12 1.06 6.49 -3.98 -0.03 1.04 16 20 C -0.15 -1.13 6.20 -26.48 -0.16 -1.29 16 21 C 0.11 0.73 7.20 -3.99 -0.03 0.70 16 22 N -0.74 -7.58 5.58 -65.53 -0.37 -7.95 16 23 C 0.72 10.41 8.18 -88.05 -0.72 9.69 16 24 O -0.60 -11.07 16.49 5.29 0.09 -10.99 16 25 C 0.12 1.98 6.24 -3.57 -0.02 1.96 16 26 C -0.11 -1.84 4.01 -88.60 -0.36 -2.19 16 27 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 28 C 0.14 2.89 6.60 -3.61 -0.02 2.87 16 29 H 0.25 6.85 8.31 -40.82 -0.34 6.52 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.10 2.43 6.00 -51.93 -0.31 2.11 16 32 H 0.08 1.50 7.71 -51.93 -0.40 1.10 16 33 H 0.07 0.96 7.61 -51.93 -0.40 0.57 16 34 H 0.11 1.20 8.05 -51.93 -0.42 0.78 16 35 H 0.12 1.63 7.02 -51.93 -0.36 1.27 16 36 H 0.08 0.80 8.06 -51.93 -0.42 0.38 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.41 3.67 8.88 -40.82 -0.36 3.31 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.07 1.10 7.44 -51.93 -0.39 0.71 16 45 H 0.02 0.50 7.29 -51.93 -0.38 0.12 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 362.70 15.07 5.47 5.47 Total: -1.00 -34.84 362.70 -10.06 -44.90 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -7.21 Total: 2.49 kcal Atomic # 6 Polarization: 21.53 SS G_CDS: -2.11 Total: 19.43 kcal Atomic # 7 Polarization: -65.68 SS G_CDS: -1.37 Total: -67.05 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: 0.18 Total: -21.60 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.84 -10.06 -44.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048917618.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.863 kcal (2) G-P(sol) polarization free energy of solvation -34.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds