Wall clock time and date at job start Tue Mar 31 2020 04:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 119.99761 * 2 1 4 4 H 1.48503 * 109.47159 * 270.00102 * 3 2 1 5 5 H 1.48500 * 109.47477 * 30.00055 * 3 2 1 6 6 H 1.48501 * 109.47227 * 150.00273 * 3 2 1 7 7 C 1.38807 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99778 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00531 * 359.97438 * 7 2 1 10 10 C 1.46746 * 125.32279 * 0.02736 * 9 7 2 11 11 C 1.53934 * 106.71806 * 198.31535 * 10 9 7 12 12 H 1.08999 * 113.60664 * 208.83236 * 11 10 9 13 13 C 1.53967 * 109.24753 * 81.63248 * 11 10 9 14 14 N 1.46779 * 106.62702 * 221.80896 * 13 11 10 15 15 C 1.34777 * 125.33980 * 198.47373 * 14 13 11 16 16 O 1.21276 * 119.99714 * 180.02562 * 15 14 13 17 17 C 1.50700 * 119.99855 * 0.05533 * 15 14 13 18 18 N 1.46493 * 109.46817 * 180.02562 * 17 15 14 19 19 C 1.46379 * 119.33526 * 90.00345 * 18 17 15 20 20 C 1.53243 * 109.15528 * 209.03699 * 19 18 17 21 21 C 1.53234 * 108.56039 * 304.51480 * 20 19 18 22 22 N 1.46377 * 109.15592 * 55.47957 * 21 20 19 23 23 C 1.34141 * 119.32882 * 269.72299 * 18 17 15 24 24 O 1.21585 * 118.69525 * 359.43606 * 23 18 17 25 25 C 1.46673 * 109.31906 * 18.52311 * 14 13 11 26 26 C 1.53718 * 107.94577 * 359.45243 * 25 14 13 27 27 H 1.09001 * 112.56113 * 220.28455 * 26 25 14 28 28 C 1.46635 * 125.33134 * 179.97438 * 9 7 2 29 29 H 0.97001 * 120.00268 * 359.97438 * 1 2 3 30 30 H 1.09004 * 110.00929 * 79.00395 * 10 9 7 31 31 H 1.09001 * 110.01056 * 317.63260 * 10 9 7 32 32 H 1.08999 * 110.02768 * 341.10365 * 13 11 10 33 33 H 1.09003 * 110.02142 * 102.52219 * 13 11 10 34 34 H 1.09000 * 109.47310 * 300.00080 * 17 15 14 35 35 H 1.08997 * 109.46993 * 60.00152 * 17 15 14 36 36 H 1.09001 * 109.52122 * 328.93779 * 19 18 17 37 37 H 1.08997 * 109.52821 * 89.12643 * 19 18 17 38 38 H 1.08998 * 109.62125 * 64.23753 * 20 19 18 39 39 H 1.08994 * 109.62095 * 184.79454 * 20 19 18 40 40 H 1.09001 * 109.52599 * 175.38340 * 21 20 19 41 41 H 1.09004 * 109.53002 * 295.51305 * 21 20 19 42 42 H 0.97007 * 119.33040 * 150.95944 * 22 21 20 43 43 H 1.09002 * 109.76818 * 239.82900 * 25 14 13 44 44 H 1.08997 * 109.76979 * 119.08050 * 25 14 13 45 45 H 1.08997 * 109.75750 * 59.54837 * 28 9 7 46 46 H 1.09002 * 109.76409 * 298.83019 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1355 -2.5244 -0.0006 11 6 -0.4465 -3.9590 0.4627 12 1 -1.3772 -4.3564 0.0577 13 6 -0.3839 -4.0208 1.9999 14 7 0.3060 -5.2702 2.3423 15 6 0.2647 -5.8796 3.5437 16 8 0.8745 -6.9128 3.7209 17 6 -0.5398 -5.2774 4.6668 18 7 -0.4232 -6.1216 5.8582 19 6 0.6551 -5.8669 6.8149 20 6 1.0348 -7.1808 7.5062 21 6 -0.2248 -7.7799 8.1406 22 7 -1.2554 -7.9308 7.1121 23 6 -1.3100 -7.1089 6.0533 24 8 -2.1958 -7.2680 5.2357 25 6 1.0484 -5.7510 1.1722 26 6 0.8080 -4.7624 0.0198 27 1 0.6710 -5.2629 -0.9387 28 6 1.9377 -3.7206 -0.0016 29 1 -0.4850 0.8400 0.0004 30 1 -0.5250 -2.3645 -1.0060 31 1 -0.5772 -1.8055 0.6896 32 1 0.1749 -3.1680 2.3853 33 1 -1.3920 -4.0253 2.4145 34 1 -0.1617 -4.2798 4.8903 35 1 -1.5862 -5.2110 4.3690 36 1 1.5224 -5.4683 6.2886 37 1 0.3179 -5.1470 7.5607 38 1 1.4413 -7.8764 6.7721 39 1 1.7772 -6.9860 8.2801 40 1 0.0104 -8.7554 8.5664 41 1 -0.5875 -7.1173 8.9265 42 1 -1.9145 -8.6371 7.1999 43 1 0.6903 -6.7409 0.8897 44 1 2.1125 -5.7959 1.4037 45 1 2.5646 -3.8388 0.8822 46 1 2.5404 -3.8486 -0.9008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048917618.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:09 Heat of formation + Delta-G solvation = -42.503476 kcal Electronic energy + Delta-G solvation = -28352.043568 eV Core-core repulsion = 24469.691547 eV Total energy + Delta-G solvation = -3882.352021 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.97516 -41.24435 -39.52626 -37.49668 -36.59257 -35.86070 -34.11925 -32.17085 -31.60651 -31.57170 -29.27655 -27.22583 -27.00083 -26.34655 -24.62539 -23.74335 -21.84209 -20.90782 -20.74562 -19.79341 -18.93383 -18.61434 -18.28868 -18.14751 -17.29415 -16.87468 -16.65470 -16.30578 -16.02930 -15.51022 -15.43073 -15.28440 -14.71289 -14.68547 -14.51841 -14.39219 -14.21922 -13.63526 -13.46488 -13.33301 -13.20713 -13.11372 -12.75547 -12.70937 -12.65530 -12.35581 -12.25382 -11.98933 -11.87538 -11.74393 -11.53313 -11.39737 -11.24433 -11.17481 -10.67668 -10.17050 -9.67468 -9.64555 -8.84293 -7.77372 -5.17705 1.47675 1.50038 1.50699 1.53326 1.59293 1.98828 2.22440 2.52053 2.87719 3.29521 3.35581 3.57437 3.70635 3.77340 3.81291 3.92504 3.96544 4.01564 4.25401 4.26823 4.29704 4.35860 4.45460 4.46963 4.59308 4.64774 4.74265 4.78539 4.83836 4.84573 4.92175 5.03157 5.14747 5.18093 5.23654 5.29518 5.34330 5.50795 5.57139 5.62920 5.85184 6.08284 6.31652 6.46411 6.75670 7.05799 7.16015 7.49945 7.82489 8.43969 9.26917 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019445 B = 0.003051 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.607601 B = 9174.322763 C = 9682.406654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.059 4.059 3 Si 0.975 3.025 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.272 1.272 7 C -0.240 4.240 8 H 0.076 0.924 9 N -0.620 5.620 10 C 0.180 3.820 11 C -0.112 4.112 12 H 0.113 0.887 13 C 0.118 3.882 14 N -0.609 5.609 15 C 0.509 3.491 16 O -0.577 6.577 17 C 0.119 3.881 18 N -0.608 5.608 19 C 0.105 3.895 20 C -0.149 4.149 21 C 0.108 3.892 22 N -0.731 5.731 23 C 0.704 3.296 24 O -0.648 6.648 25 C 0.124 3.876 26 C -0.096 4.096 27 H 0.118 0.882 28 C 0.142 3.858 29 H 0.248 0.752 30 H -0.009 1.009 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.135 0.865 35 H 0.112 0.888 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.053 0.947 39 H 0.131 0.869 40 H 0.108 0.892 41 H 0.087 0.913 42 H 0.418 0.582 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.020 0.980 46 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.280 -13.188 16.880 21.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.252 4.252 3 Si 0.804 3.196 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.197 1.197 7 C -0.369 4.369 8 H 0.094 0.906 9 N -0.346 5.346 10 C 0.055 3.945 11 C -0.132 4.132 12 H 0.131 0.869 13 C -0.005 4.005 14 N -0.343 5.343 15 C 0.297 3.703 16 O -0.457 6.457 17 C -0.009 4.009 18 N -0.343 5.343 19 C -0.017 4.017 20 C -0.187 4.187 21 C -0.015 4.015 22 N -0.388 5.388 23 C 0.405 3.595 24 O -0.531 6.531 25 C 0.001 3.999 26 C -0.115 4.115 27 H 0.136 0.864 28 C 0.016 3.984 29 H 0.058 0.942 30 H 0.009 0.991 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.153 0.847 35 H 0.130 0.870 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.149 0.851 40 H 0.127 0.873 41 H 0.105 0.895 42 H 0.256 0.744 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.038 0.962 46 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -0.269 -13.499 16.682 21.461 hybrid contribution 0.317 0.764 -0.605 1.025 sum 0.047 -12.735 16.077 20.510 Atomic orbital electron populations 1.70068 1.05894 1.25147 1.58216 1.25514 0.96608 1.00537 1.02534 0.85132 0.77677 0.79537 0.77270 1.21737 1.21819 1.19735 1.19356 0.90853 0.83682 1.42987 0.90573 1.44483 1.02544 1.00711 1.86848 1.21127 0.83859 0.91971 0.97593 1.23139 0.98624 0.97135 0.94288 0.86865 1.22060 0.97474 0.85137 0.95795 1.48407 1.49326 1.25503 1.11028 1.21359 0.81582 0.84105 0.83204 1.90628 1.47316 1.25084 1.82627 1.21211 1.01934 0.94605 0.83109 1.46476 1.30745 1.33471 1.23606 1.21907 0.89231 0.98947 0.91569 1.22208 0.98912 0.96105 1.01492 1.21827 0.86420 1.03844 0.89447 1.44936 1.35387 1.34583 1.23909 1.15681 0.81497 0.80007 0.82305 1.90901 1.39751 1.75122 1.47369 1.21727 0.96231 0.97243 0.84659 1.22726 0.95190 0.94853 0.98716 0.86370 1.21314 0.94472 0.84807 0.97770 0.94230 0.99093 0.91146 0.92068 0.89033 0.84700 0.86993 0.90411 0.88733 0.92776 0.85095 0.87346 0.89485 0.74407 0.91223 0.92000 0.96197 0.95772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.50 10.16 21.65 0.22 -53.28 16 2 C -0.06 -3.20 5.48 84.86 0.47 -2.73 16 3 Si 0.98 44.24 29.55 68.60 2.03 46.26 16 4 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.24 -12.98 10.25 84.03 0.86 -12.12 16 8 H 0.08 4.02 7.83 -2.91 -0.02 3.99 16 9 N -0.62 -30.36 3.37 -697.86 -2.35 -32.72 16 10 C 0.18 8.21 4.81 86.65 0.42 8.62 16 11 C -0.11 -3.81 4.17 -9.32 -0.04 -3.84 16 12 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 13 C 0.12 3.73 5.86 86.65 0.51 4.24 16 14 N -0.61 -19.55 3.31 -817.38 -2.71 -22.25 16 15 C 0.51 16.78 7.90 87.66 0.69 17.47 16 16 O -0.58 -22.56 16.74 -3.02 -0.05 -22.61 16 17 C 0.12 3.14 4.83 85.63 0.41 3.55 16 18 N -0.61 -15.11 2.30 -845.68 -1.95 -17.06 16 19 C 0.10 1.72 6.49 86.48 0.56 2.28 16 20 C -0.15 -1.82 6.20 30.75 0.19 -1.63 16 21 C 0.11 1.07 7.20 86.48 0.62 1.70 16 22 N -0.73 -13.92 5.58 -479.86 -2.68 -16.60 16 23 C 0.70 20.05 8.18 179.45 1.47 21.51 16 24 O -0.65 -24.33 16.49 -3.98 -0.07 -24.40 16 25 C 0.12 3.89 6.24 86.59 0.54 4.43 16 26 C -0.10 -3.08 4.01 -9.49 -0.04 -3.12 16 27 H 0.12 3.30 8.14 -2.39 -0.02 3.28 16 28 C 0.14 5.65 6.60 86.59 0.57 6.22 16 29 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 30 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 31 H 0.07 3.61 6.00 -2.39 -0.01 3.59 16 32 H 0.06 2.23 7.71 -2.39 -0.02 2.21 16 33 H 0.09 2.48 7.61 -2.39 -0.02 2.46 16 34 H 0.14 2.78 8.05 -2.39 -0.02 2.76 16 35 H 0.11 3.09 7.02 -2.39 -0.02 3.07 16 36 H 0.08 1.36 8.06 -2.39 -0.02 1.34 16 37 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 42 H 0.42 6.95 8.88 -92.70 -0.82 6.13 16 43 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.06 2.00 7.44 -2.39 -0.02 1.98 16 45 H 0.02 0.82 7.29 -2.39 -0.02 0.80 16 46 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -77.84 362.70 -0.15 -77.99 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.17 Total: 18.08 kcal Atomic # 6 Polarization: 39.34 SS G_CDS: 7.24 Total: 46.58 kcal Atomic # 7 Polarization: -132.44 SS G_CDS: -9.47 Total: -141.91 kcal Atomic # 8 Polarization: -46.89 SS G_CDS: -0.12 Total: -47.01 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -77.84 -0.15 -77.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048917618.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.485 kcal (2) G-P(sol) polarization free energy of solvation -77.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds