Wall clock time and date at job start Tue Mar 31 2020 05:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39872 * 126.04129 * 2 1 4 4 N 1.30835 * 108.20212 * 179.97438 * 3 2 1 5 5 N 1.40086 * 108.20911 * 359.97438 * 4 3 2 6 6 C 1.46499 * 126.03578 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47066 * 305.01878 * 6 5 4 8 8 C 1.50694 * 109.46877 * 180.02562 * 7 6 5 9 9 O 1.21281 * 120.00654 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00091 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00361 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.45307 * 35.03406 * 11 10 8 13 13 C 1.53044 * 109.46189 * 275.06459 * 11 10 8 14 14 C 1.52755 * 109.38132 * 301.22024 * 13 11 10 15 15 N 1.46923 * 109.00900 * 305.58408 * 14 13 11 16 16 C 1.36943 * 120.62930 * 233.58508 * 15 14 13 17 17 H 1.08000 * 119.99888 * 152.17192 * 16 15 14 18 18 C 1.38811 * 119.99955 * 332.17173 * 16 15 14 19 19 N 1.31614 * 120.00254 * 342.76805 * 18 16 15 20 20 Si 1.86801 * 119.99678 * 162.77313 * 18 16 15 21 21 H 1.48501 * 109.46669 * 179.97438 * 20 18 16 22 22 H 1.48497 * 109.46948 * 299.99298 * 20 18 16 23 23 H 1.48498 * 109.47140 * 59.99949 * 20 18 16 24 24 C 1.46927 * 118.73893 * 53.31139 * 15 14 13 25 25 C 1.53046 * 109.46379 * 154.99790 * 11 10 8 26 26 H 1.08995 * 109.52949 * 178.62445 * 25 11 10 27 27 O 1.42898 * 109.49343 * 298.70602 * 25 11 10 28 28 C 1.34945 * 107.92282 * 0.26443 * 5 4 3 29 29 H 1.09007 * 109.46995 * 89.98155 * 1 2 3 30 30 H 1.09006 * 109.47169 * 209.97883 * 1 2 3 31 31 H 1.09001 * 109.47290 * 329.97996 * 1 2 3 32 32 H 1.08000 * 125.89819 * 0.02562 * 3 2 1 33 33 H 1.09007 * 109.46410 * 185.02235 * 6 5 4 34 34 H 1.08997 * 109.47218 * 65.02521 * 6 5 4 35 35 H 1.09004 * 109.46722 * 60.00768 * 7 6 5 36 36 H 1.08997 * 109.47628 * 300.00393 * 7 6 5 37 37 H 0.97006 * 119.99741 * 359.97438 * 10 8 7 38 38 H 1.09007 * 109.49256 * 61.29397 * 13 11 10 39 39 H 1.08998 * 109.49776 * 181.36062 * 13 11 10 40 40 H 1.09005 * 109.50719 * 185.70148 * 14 13 11 41 41 H 1.09006 * 109.43430 * 65.42411 * 14 13 11 42 42 H 0.96995 * 120.00322 * 180.02562 * 19 18 16 43 43 H 1.09004 * 109.58525 * 66.43417 * 24 15 14 44 44 H 1.08999 * 109.58786 * 186.85311 * 24 15 14 45 45 H 0.96702 * 113.99942 * 179.83960 * 27 25 11 46 46 H 1.08000 * 126.13118 * 179.73710 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5753 0.7302 0.0006 5 7 3.5844 -0.6706 0.0015 6 6 4.7746 -1.5248 0.0029 7 6 5.6723 -1.1505 -1.1781 8 6 6.8963 -2.0295 -1.1770 9 8 7.0366 -2.8728 -0.3167 10 7 7.8352 -1.8787 -2.1321 11 6 9.0248 -2.7337 -2.1314 12 1 8.7555 -3.7302 -1.7812 13 6 10.0825 -2.1349 -1.2013 14 6 10.4357 -0.7265 -1.6755 15 7 10.8365 -0.7835 -3.0879 16 6 12.0332 -0.2571 -3.4954 17 1 12.5327 -0.6602 -4.3639 18 6 12.6043 0.7946 -2.7920 19 7 11.8713 1.5065 -1.9625 20 14 14.4132 1.1994 -3.0229 21 1 14.7747 2.3567 -2.1655 22 1 15.2362 0.0238 -2.6412 23 1 14.6665 1.5401 -4.4460 24 6 9.9316 -1.4215 -4.0538 25 6 9.5865 -2.8271 -3.5520 26 1 10.4857 -3.4431 -3.5485 27 8 8.6093 -3.4145 -4.4135 28 6 2.3032 -1.0942 -0.0044 29 1 -0.3633 0.0003 -1.0277 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3634 0.8898 0.5141 32 1 1.9951 2.1578 0.0004 33 1 4.4728 -2.5685 -0.0866 34 1 5.3221 -1.3835 0.9347 35 1 5.9741 -0.1069 -1.0886 36 1 5.1248 -1.2918 -2.1099 37 1 7.7229 -1.2045 -2.8205 38 1 9.6901 -2.0904 -0.1853 39 1 10.9769 -2.7576 -1.2189 40 1 11.2595 -0.3369 -1.0773 41 1 9.5655 -0.0788 -1.5684 42 1 12.2702 2.2416 -1.4713 43 1 9.0195 -0.8316 -4.1447 44 1 10.4228 -1.4903 -5.0244 45 1 8.8972 -3.5025 -5.3324 46 1 1.9723 -2.1223 -0.0093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100126711.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:14 Heat of formation + Delta-G solvation = 10.080401 kcal Electronic energy + Delta-G solvation = -27463.489529 eV Core-core repulsion = 23583.417716 eV Total energy + Delta-G solvation = -3880.071813 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.31448 -39.92454 -38.06128 -35.49988 -34.61805 -34.05728 -31.99592 -31.74374 -30.73568 -29.90789 -28.61887 -26.64292 -25.39381 -24.29353 -22.36947 -21.94186 -21.09292 -20.62224 -20.03115 -18.78294 -17.58021 -17.16096 -16.65075 -16.27861 -15.79614 -15.53859 -14.97127 -14.81366 -14.49610 -14.21305 -14.02777 -13.88291 -13.54000 -13.44987 -13.26509 -13.01084 -12.92392 -12.63845 -12.31289 -12.20113 -12.07013 -12.02359 -11.71510 -11.43355 -11.20968 -10.90703 -10.70916 -10.59643 -10.44694 -10.24827 -9.99072 -9.89989 -9.69029 -9.49792 -9.47895 -8.68200 -8.54449 -8.44151 -6.81588 -5.89802 -3.34298 1.78710 2.35597 2.68126 2.83542 3.31959 3.38812 3.39128 3.47151 4.31961 4.39225 4.47853 4.64968 4.70469 4.87755 5.01423 5.11181 5.22522 5.24718 5.27089 5.33232 5.41664 5.51435 5.52458 5.54303 5.64906 5.68875 5.74276 5.86973 5.91286 5.99755 6.01325 6.20934 6.40378 6.49250 6.55891 6.60030 6.65152 6.87541 6.90500 7.23612 7.55060 7.61389 7.68140 7.78029 7.86112 8.32322 8.43947 9.08006 9.70330 10.25335 11.18393 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016799 B = 0.002731 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.384004 B =10250.029909 C =11176.450364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.249 4.249 3 C 0.045 3.955 4 N -0.290 5.290 5 N -0.369 5.369 6 C 0.152 3.848 7 C -0.153 4.153 8 C 0.521 3.479 9 O -0.555 6.555 10 N -0.701 5.701 11 C 0.166 3.834 12 H 0.079 0.921 13 C -0.153 4.153 14 C 0.171 3.829 15 N -0.586 5.586 16 C -0.262 4.262 17 H 0.066 0.934 18 C 0.007 3.993 19 N -0.898 5.898 20 Si 0.905 3.095 21 H -0.290 1.290 22 H -0.283 1.283 23 H -0.282 1.282 24 C 0.118 3.882 25 C 0.075 3.925 26 H 0.067 0.933 27 O -0.572 6.572 28 C 0.054 3.946 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.181 0.819 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.403 0.597 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.021 0.979 42 H 0.256 0.744 43 H 0.022 0.978 44 H 0.059 0.941 45 H 0.374 0.626 46 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.827 -6.223 0.743 18.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.261 4.261 3 C -0.141 4.141 4 N -0.111 5.111 5 N -0.151 5.151 6 C 0.031 3.969 7 C -0.194 4.194 8 C 0.306 3.694 9 O -0.435 6.435 10 N -0.351 5.351 11 C 0.061 3.939 12 H 0.097 0.903 13 C -0.193 4.193 14 C 0.046 3.954 15 N -0.311 5.311 16 C -0.391 4.391 17 H 0.084 0.916 18 C -0.193 4.193 19 N -0.542 5.542 20 Si 0.734 3.266 21 H -0.215 1.215 22 H -0.209 1.209 23 H -0.208 1.208 24 C -0.009 4.009 25 C 0.014 3.986 26 H 0.085 0.915 27 O -0.376 6.376 28 C -0.092 4.092 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.198 0.802 33 H 0.122 0.878 34 H 0.113 0.887 35 H 0.127 0.873 36 H 0.114 0.886 37 H 0.239 0.761 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.108 0.892 41 H 0.039 0.961 42 H 0.066 0.934 43 H 0.040 0.960 44 H 0.077 0.923 45 H 0.221 0.779 46 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -16.628 -6.421 2.004 17.937 hybrid contribution 0.458 0.416 -1.008 1.183 sum -16.169 -6.005 0.997 17.277 Atomic orbital electron populations 1.20023 0.89460 1.01958 1.01384 1.20142 0.97045 0.91938 1.16926 1.23810 0.90009 0.99785 1.00478 1.77396 1.21196 0.88895 1.23602 1.48715 1.05483 1.04780 1.56155 1.21435 0.83128 0.92398 0.99924 1.21861 0.95123 1.02342 1.00061 1.20173 0.83928 0.83779 0.81525 1.90679 1.79044 1.36278 1.37451 1.45925 1.20892 1.38423 1.29905 1.20844 0.84859 0.94107 0.94051 0.90313 1.22520 0.97292 1.01437 0.98077 1.20707 0.99497 0.90021 0.85203 1.43988 1.18347 1.66839 1.01890 1.19104 0.95420 1.11246 1.13308 0.91621 1.25056 0.98661 0.95440 1.00133 1.70015 1.34303 1.19554 1.30303 0.86345 0.85057 0.77549 0.77641 1.21548 1.20918 1.20825 1.21534 0.94100 0.91147 0.94124 1.22758 0.90235 0.96006 0.89585 0.91545 1.86471 1.44010 1.84234 1.22888 1.22363 0.84233 1.00057 1.02576 0.92279 0.92332 0.91998 0.80249 0.87834 0.88693 0.87294 0.88598 0.76077 0.91792 0.91480 0.89207 0.96078 0.93379 0.96004 0.92253 0.77947 0.81145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.37 36.00 0.37 -0.11 16 2 C -0.25 -2.46 6.10 -105.05 -0.64 -3.10 16 3 C 0.05 0.51 11.96 -17.36 -0.21 0.30 16 4 N -0.29 -3.97 12.42 30.62 0.38 -3.59 16 5 N -0.37 -4.45 3.68 -61.36 -0.23 -4.68 16 6 C 0.15 1.77 5.80 -4.04 -0.02 1.74 16 7 C -0.15 -1.90 5.88 -27.89 -0.16 -2.07 16 8 C 0.52 8.08 7.79 -10.99 -0.09 8.00 16 9 O -0.56 -10.04 15.65 5.56 0.09 -9.95 16 10 N -0.70 -11.29 4.16 -53.76 -0.22 -11.52 16 11 C 0.17 2.88 2.47 -67.89 -0.17 2.72 16 12 H 0.08 1.42 7.58 -51.93 -0.39 1.03 16 13 C -0.15 -2.94 5.75 -26.83 -0.15 -3.10 16 14 C 0.17 3.92 5.03 -3.94 -0.02 3.90 16 15 N -0.59 -13.71 3.00 -172.58 -0.52 -14.23 16 16 C -0.26 -6.82 9.58 -15.06 -0.14 -6.96 16 17 H 0.07 1.67 7.89 -52.49 -0.41 1.26 16 18 C 0.01 0.18 4.91 -17.43 -0.09 0.09 16 19 N -0.90 -25.30 11.19 55.49 0.62 -24.68 16 20 Si 0.90 21.06 29.59 -169.99 -5.03 16.03 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C 0.12 2.24 5.85 -3.71 -0.02 2.22 16 25 C 0.07 1.23 3.36 -26.61 -0.09 1.14 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 27 O -0.57 -8.24 13.21 -35.23 -0.47 -8.70 16 28 C 0.05 0.54 11.36 -17.22 -0.20 0.34 16 29 H 0.06 0.38 8.14 -51.92 -0.42 -0.05 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.18 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.10 1.03 8.03 -51.92 -0.42 0.62 16 34 H 0.09 1.19 8.10 -51.93 -0.42 0.77 16 35 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.40 6.33 6.87 -40.82 -0.28 6.05 16 38 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.09 2.34 6.04 -51.93 -0.31 2.03 16 41 H 0.02 0.51 7.74 -51.93 -0.40 0.11 16 42 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.02 0.42 6.64 -51.93 -0.34 0.07 16 44 H 0.06 1.08 7.93 -51.93 -0.41 0.67 16 45 H 0.37 3.83 9.08 45.56 0.41 4.25 16 46 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 375.88 15.07 5.66 5.66 Total: -1.00 -32.31 375.88 -7.68 -39.99 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -6.35 Total: 10.55 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -1.63 Total: 5.11 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: 0.03 Total: -58.69 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.38 Total: -18.65 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.31 -7.68 -39.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100126711.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.075 kcal (2) G-P(sol) polarization free energy of solvation -32.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds