Wall clock time and date at job start Tue Mar 31 2020 05:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39867 * 126.03858 * 2 1 4 4 N 1.30829 * 108.20416 * 179.97438 * 3 2 1 5 5 N 1.40084 * 108.20733 * 359.97438 * 4 3 2 6 6 C 1.46499 * 126.04177 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47191 * 305.02349 * 6 5 4 8 8 C 1.50696 * 109.47518 * 180.02562 * 7 6 5 9 9 O 1.21282 * 119.99653 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00400 * 180.02562 * 8 7 6 11 11 C 1.46492 * 120.00347 * 179.97438 * 10 8 7 12 12 H 1.09006 * 109.46147 * 325.02559 * 11 10 8 13 13 C 1.53040 * 109.46164 * 84.99458 * 11 10 8 14 14 C 1.53191 * 109.31280 * 58.65500 * 13 11 10 15 15 N 1.46932 * 108.77484 * 54.63618 * 14 13 11 16 16 C 1.36930 * 120.62940 * 126.36624 * 15 14 13 17 17 H 1.08004 * 120.00131 * 207.68398 * 16 15 14 18 18 C 1.38816 * 120.00184 * 27.68743 * 16 15 14 19 19 N 1.31618 * 119.99901 * 17.37104 * 18 16 15 20 20 Si 1.86804 * 120.00166 * 197.36887 * 18 16 15 21 21 H 1.48503 * 109.46878 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47050 * 120.00147 * 20 18 16 23 23 H 1.48498 * 109.47031 * 240.00153 * 20 18 16 24 24 C 1.46922 * 118.73688 * 306.39612 * 15 14 13 25 25 C 1.53038 * 109.46221 * 205.06266 * 11 10 8 26 26 H 1.09002 * 109.49626 * 181.39125 * 25 11 10 27 27 O 1.42897 * 109.49316 * 61.29706 * 25 11 10 28 28 C 1.34949 * 107.92210 * 0.26416 * 5 4 3 29 29 H 1.09001 * 109.47171 * 89.97723 * 1 2 3 30 30 H 1.09000 * 109.47387 * 209.97708 * 1 2 3 31 31 H 1.09000 * 109.47581 * 329.97556 * 1 2 3 32 32 H 1.08001 * 125.89820 * 359.97438 * 3 2 1 33 33 H 1.08999 * 109.47390 * 185.02341 * 6 5 4 34 34 H 1.08999 * 109.47157 * 65.02401 * 6 5 4 35 35 H 1.08999 * 109.46960 * 59.99728 * 7 6 5 36 36 H 1.08999 * 109.47113 * 300.00079 * 7 6 5 37 37 H 0.97002 * 119.99523 * 359.71737 * 10 8 7 38 38 H 1.08995 * 109.49940 * 178.60806 * 13 11 10 39 39 H 1.09010 * 109.49963 * 298.70525 * 13 11 10 40 40 H 1.09005 * 109.58767 * 174.42038 * 14 13 11 41 41 H 1.08999 * 109.58659 * 294.84783 * 14 13 11 42 42 H 0.96998 * 120.00115 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.58603 * 173.39855 * 24 15 14 44 44 H 1.09006 * 109.58367 * 293.67336 * 24 15 14 45 45 H 0.96701 * 113.99945 * 180.02562 * 27 25 11 46 46 H 1.07996 * 126.12482 * 179.74026 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3298 1.1310 0.0000 4 7 3.5753 0.7303 0.0006 5 7 3.5844 -0.6705 0.0015 6 6 4.7745 -1.5247 0.0029 7 6 5.6724 -1.1504 -1.1780 8 6 6.8964 -2.0295 -1.1770 9 8 7.0370 -2.8722 -0.3162 10 7 7.8353 -1.8786 -2.1321 11 6 9.0254 -2.7328 -2.1308 12 1 9.3191 -2.9449 -1.1027 13 6 8.7117 -4.0454 -2.8525 14 6 8.2665 -3.7413 -4.2864 15 7 9.2995 -2.9256 -4.9394 16 6 9.8409 -3.3126 -6.1361 17 1 10.8457 -3.0138 -6.3961 18 6 9.0983 -4.0889 -7.0152 19 7 7.7918 -4.1710 -6.8783 20 14 9.9531 -5.0169 -8.3928 21 1 11.4144 -4.7598 -8.3304 22 1 9.6991 -6.4721 -8.2413 23 1 9.4254 -4.5559 -9.7020 24 6 9.7409 -1.6872 -4.2835 25 6 10.1695 -2.0143 -2.8497 26 1 11.0480 -2.6593 -2.8707 27 8 10.4822 -0.8040 -2.1574 28 6 2.3031 -1.0941 -0.0044 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3634 0.8897 0.5142 32 1 1.9950 2.1578 -0.0004 33 1 4.4729 -2.5683 -0.0866 34 1 5.3221 -1.3835 0.9347 35 1 5.9740 -0.1068 -1.0885 36 1 5.1248 -1.2917 -2.1098 37 1 7.7212 -1.2069 -2.8225 38 1 9.6038 -4.6712 -2.8735 39 1 7.9125 -4.5679 -2.3265 40 1 8.1372 -4.6746 -4.8346 41 1 7.3249 -3.1925 -4.2680 42 1 7.2729 -4.7137 -7.4923 43 1 10.5844 -1.2651 -4.8298 44 1 8.9203 -0.9699 -4.2672 45 1 11.2002 -0.2955 -2.5588 46 1 1.9724 -2.1222 -0.0093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100126712.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:17 Heat of formation + Delta-G solvation = 9.590898 kcal Electronic energy + Delta-G solvation = -27472.199402 eV Core-core repulsion = 23592.106363 eV Total energy + Delta-G solvation = -3880.093039 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.31404 -39.92301 -38.05847 -35.49520 -34.61821 -34.06427 -31.99297 -31.74472 -30.74032 -29.90035 -28.62038 -26.63702 -25.40670 -24.29803 -22.38217 -21.95008 -21.09207 -20.62024 -20.03162 -18.79435 -17.57938 -17.16349 -16.66073 -16.26141 -15.90816 -15.29570 -15.05115 -14.96615 -14.48030 -14.19965 -13.98762 -13.80709 -13.65846 -13.42047 -13.25917 -13.00104 -12.86681 -12.69396 -12.30159 -12.20043 -12.07259 -12.02129 -11.71098 -11.43729 -11.23111 -10.94658 -10.73577 -10.61600 -10.40870 -10.26162 -10.00833 -9.90226 -9.68772 -9.50013 -9.48225 -8.68782 -8.56975 -8.43507 -6.83664 -5.92307 -3.36302 1.78741 2.35541 2.67976 2.83560 3.29287 3.37752 3.39277 3.47023 4.31369 4.38828 4.47465 4.66284 4.72608 4.87831 5.01659 5.12735 5.22578 5.23262 5.27842 5.33469 5.40875 5.51038 5.53541 5.54752 5.65259 5.69191 5.74180 5.87706 5.90682 6.00466 6.00870 6.20094 6.39414 6.47560 6.55723 6.59499 6.62846 6.86882 6.90621 7.20829 7.52177 7.60340 7.66865 7.77922 7.87438 8.30060 8.43879 9.05933 9.68237 10.23297 11.15868 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015192 B = 0.002802 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.648095 B = 9990.437016 C =11032.123905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.249 4.249 3 C 0.046 3.954 4 N -0.294 5.294 5 N -0.369 5.369 6 C 0.153 3.847 7 C -0.153 4.153 8 C 0.521 3.479 9 O -0.555 6.555 10 N -0.701 5.701 11 C 0.166 3.834 12 H 0.079 0.921 13 C -0.153 4.153 14 C 0.172 3.828 15 N -0.587 5.587 16 C -0.259 4.259 17 H 0.067 0.933 18 C 0.005 3.995 19 N -0.899 5.899 20 Si 0.904 3.096 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.290 1.290 24 C 0.118 3.882 25 C 0.075 3.925 26 H 0.067 0.933 27 O -0.571 6.571 28 C 0.056 3.944 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.180 0.820 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.403 0.597 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.020 0.980 42 H 0.255 0.745 43 H 0.059 0.941 44 H 0.022 0.978 45 H 0.374 0.626 46 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.273 7.016 12.254 16.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.260 4.260 3 C -0.140 4.140 4 N -0.115 5.115 5 N -0.151 5.151 6 C 0.031 3.969 7 C -0.194 4.194 8 C 0.306 3.694 9 O -0.435 6.435 10 N -0.351 5.351 11 C 0.061 3.939 12 H 0.097 0.903 13 C -0.193 4.193 14 C 0.046 3.954 15 N -0.311 5.311 16 C -0.388 4.388 17 H 0.085 0.915 18 C -0.194 4.194 19 N -0.543 5.543 20 Si 0.733 3.267 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.217 1.217 24 C -0.010 4.010 25 C 0.015 3.985 26 H 0.085 0.915 27 O -0.375 6.375 28 C -0.090 4.090 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.197 0.803 33 H 0.123 0.877 34 H 0.112 0.888 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.239 0.761 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.108 0.892 41 H 0.039 0.961 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.040 0.960 45 H 0.221 0.779 46 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -7.376 6.379 13.138 16.362 hybrid contribution -0.054 -0.266 -1.609 1.631 sum -7.430 6.113 11.529 15.017 Atomic orbital electron populations 1.20027 0.89432 1.01935 1.01479 1.20140 0.97083 0.91926 1.16875 1.23783 0.90021 0.99751 1.00484 1.77326 1.21242 0.89010 1.23926 1.48696 1.05523 1.04714 1.56182 1.21433 0.83124 0.92601 0.99706 1.21860 0.95219 1.01948 1.00368 1.20174 0.84043 0.83824 0.81360 1.90679 1.78516 1.36327 1.37930 1.45921 1.21122 1.38502 1.29594 1.20844 0.83191 0.90178 0.99681 0.90282 1.22593 1.01740 0.95150 0.99858 1.20796 0.89548 0.97293 0.87736 1.44019 1.45751 1.19947 1.21406 1.19198 0.96033 1.30047 0.93534 0.91510 1.25055 0.94959 1.01801 0.97562 1.70037 1.04065 1.41492 1.38674 0.86209 0.79063 0.79742 0.81643 1.20208 1.21434 1.21650 1.21539 0.98064 0.90262 0.91086 1.22742 0.96640 0.85763 0.93399 0.91549 1.86481 1.58367 1.36810 1.55863 1.22389 0.84187 1.00153 1.02266 0.92198 0.92293 0.92036 0.80283 0.87696 0.88847 0.87603 0.88290 0.76079 0.91438 0.91860 0.89185 0.96143 0.93533 0.92250 0.95982 0.77939 0.81051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.37 36.00 0.37 -0.14 16 2 C -0.25 -2.51 6.10 -105.06 -0.64 -3.15 16 3 C 0.05 0.50 11.96 -17.37 -0.21 0.29 16 4 N -0.29 -3.89 12.42 30.62 0.38 -3.51 16 5 N -0.37 -4.45 3.68 -61.37 -0.23 -4.68 16 6 C 0.15 1.77 5.80 -4.04 -0.02 1.74 16 7 C -0.15 -1.91 5.88 -27.89 -0.16 -2.07 16 8 C 0.52 8.08 7.79 -10.99 -0.09 8.00 16 9 O -0.56 -10.03 15.64 5.56 0.09 -9.95 16 10 N -0.70 -11.29 4.15 -53.77 -0.22 -11.51 16 11 C 0.17 2.87 2.47 -67.89 -0.17 2.71 16 12 H 0.08 1.44 7.58 -51.93 -0.39 1.04 16 13 C -0.15 -2.90 5.77 -26.61 -0.15 -3.06 16 14 C 0.17 3.87 5.05 -3.71 -0.02 3.85 16 15 N -0.59 -13.60 2.99 -172.32 -0.52 -14.12 16 16 C -0.26 -6.70 9.58 -15.06 -0.14 -6.84 16 17 H 0.07 1.70 7.89 -52.48 -0.41 1.28 16 18 C 0.01 0.14 4.91 -17.43 -0.09 0.06 16 19 N -0.90 -24.99 11.19 55.49 0.62 -24.37 16 20 Si 0.90 20.88 29.59 -169.99 -5.03 15.85 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 C 0.12 2.23 5.84 -3.72 -0.02 2.20 16 25 C 0.08 1.24 3.36 -26.62 -0.09 1.15 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 27 O -0.57 -8.37 13.21 -35.23 -0.47 -8.83 16 28 C 0.06 0.58 11.36 -17.22 -0.20 0.39 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.18 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.10 1.10 8.03 -51.93 -0.42 0.68 16 34 H 0.09 1.12 8.10 -51.93 -0.42 0.70 16 35 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.40 6.33 6.87 -40.82 -0.28 6.05 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 40 H 0.09 2.32 6.04 -51.93 -0.31 2.00 16 41 H 0.02 0.48 7.74 -51.93 -0.40 0.08 16 42 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 43 H 0.06 1.08 7.93 -51.93 -0.41 0.67 16 44 H 0.02 0.42 6.65 -51.93 -0.35 0.08 16 45 H 0.37 3.92 9.08 45.56 0.41 4.33 16 46 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 375.90 15.07 5.66 5.66 Total: -1.00 -32.00 375.90 -7.68 -39.68 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -6.35 Total: 10.61 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -1.62 Total: 5.15 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: 0.04 Total: -58.18 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.38 Total: -18.78 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.00 -7.68 -39.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100126712.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.271 kcal (2) G-P(sol) polarization free energy of solvation -32.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds