Wall clock time and date at job start Tue Mar 31 2020 05:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39867 * 126.03858 * 2 1 4 4 N 1.30829 * 108.20416 * 179.97438 * 3 2 1 5 5 N 1.40084 * 108.20733 * 359.97438 * 4 3 2 6 6 C 1.46499 * 126.04177 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47191 * 305.02349 * 6 5 4 8 8 C 1.50696 * 109.47518 * 180.02562 * 7 6 5 9 9 O 1.21282 * 119.99653 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00400 * 180.02562 * 8 7 6 11 11 C 1.46492 * 120.00347 * 179.97438 * 10 8 7 12 12 H 1.09006 * 109.46147 * 325.02559 * 11 10 8 13 13 C 1.53040 * 109.46164 * 84.99458 * 11 10 8 14 14 C 1.53191 * 109.31280 * 58.65500 * 13 11 10 15 15 N 1.46932 * 108.77484 * 54.63618 * 14 13 11 16 16 C 1.36930 * 120.62940 * 126.36624 * 15 14 13 17 17 H 1.08004 * 120.00131 * 207.68398 * 16 15 14 18 18 C 1.38816 * 120.00184 * 27.68743 * 16 15 14 19 19 N 1.31618 * 119.99901 * 17.37104 * 18 16 15 20 20 Si 1.86804 * 120.00166 * 197.36887 * 18 16 15 21 21 H 1.48503 * 109.46878 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47050 * 120.00147 * 20 18 16 23 23 H 1.48498 * 109.47031 * 240.00153 * 20 18 16 24 24 C 1.46922 * 118.73688 * 306.39612 * 15 14 13 25 25 C 1.53038 * 109.46221 * 205.06266 * 11 10 8 26 26 H 1.09002 * 109.49626 * 181.39125 * 25 11 10 27 27 O 1.42897 * 109.49316 * 61.29706 * 25 11 10 28 28 C 1.34949 * 107.92210 * 0.26416 * 5 4 3 29 29 H 1.09001 * 109.47171 * 89.97723 * 1 2 3 30 30 H 1.09000 * 109.47387 * 209.97708 * 1 2 3 31 31 H 1.09000 * 109.47581 * 329.97556 * 1 2 3 32 32 H 1.08001 * 125.89820 * 359.97438 * 3 2 1 33 33 H 1.08999 * 109.47390 * 185.02341 * 6 5 4 34 34 H 1.08999 * 109.47157 * 65.02401 * 6 5 4 35 35 H 1.08999 * 109.46960 * 59.99728 * 7 6 5 36 36 H 1.08999 * 109.47113 * 300.00079 * 7 6 5 37 37 H 0.97002 * 119.99523 * 359.71737 * 10 8 7 38 38 H 1.08995 * 109.49940 * 178.60806 * 13 11 10 39 39 H 1.09010 * 109.49963 * 298.70525 * 13 11 10 40 40 H 1.09005 * 109.58767 * 174.42038 * 14 13 11 41 41 H 1.08999 * 109.58659 * 294.84783 * 14 13 11 42 42 H 0.96998 * 120.00115 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.58603 * 173.39855 * 24 15 14 44 44 H 1.09006 * 109.58367 * 293.67336 * 24 15 14 45 45 H 0.96701 * 113.99945 * 180.02562 * 27 25 11 46 46 H 1.07996 * 126.12482 * 179.74026 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3298 1.1310 0.0000 4 7 3.5753 0.7303 0.0006 5 7 3.5844 -0.6705 0.0015 6 6 4.7745 -1.5247 0.0029 7 6 5.6724 -1.1504 -1.1780 8 6 6.8964 -2.0295 -1.1770 9 8 7.0370 -2.8722 -0.3162 10 7 7.8353 -1.8786 -2.1321 11 6 9.0254 -2.7328 -2.1308 12 1 9.3191 -2.9449 -1.1027 13 6 8.7117 -4.0454 -2.8525 14 6 8.2665 -3.7413 -4.2864 15 7 9.2995 -2.9256 -4.9394 16 6 9.8409 -3.3126 -6.1361 17 1 10.8457 -3.0138 -6.3961 18 6 9.0983 -4.0889 -7.0152 19 7 7.7918 -4.1710 -6.8783 20 14 9.9531 -5.0169 -8.3928 21 1 11.4144 -4.7598 -8.3304 22 1 9.6991 -6.4721 -8.2413 23 1 9.4254 -4.5559 -9.7020 24 6 9.7409 -1.6872 -4.2835 25 6 10.1695 -2.0143 -2.8497 26 1 11.0480 -2.6593 -2.8707 27 8 10.4822 -0.8040 -2.1574 28 6 2.3031 -1.0941 -0.0044 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3634 0.8897 0.5142 32 1 1.9950 2.1578 -0.0004 33 1 4.4729 -2.5683 -0.0866 34 1 5.3221 -1.3835 0.9347 35 1 5.9740 -0.1068 -1.0885 36 1 5.1248 -1.2917 -2.1098 37 1 7.7212 -1.2069 -2.8225 38 1 9.6038 -4.6712 -2.8735 39 1 7.9125 -4.5679 -2.3265 40 1 8.1372 -4.6746 -4.8346 41 1 7.3249 -3.1925 -4.2680 42 1 7.2729 -4.7137 -7.4923 43 1 10.5844 -1.2651 -4.8298 44 1 8.9203 -0.9699 -4.2672 45 1 11.2002 -0.2955 -2.5588 46 1 1.9724 -2.1222 -0.0093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100126712.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:16 Heat of formation + Delta-G solvation = -13.133419 kcal Electronic energy + Delta-G solvation = -27473.184802 eV Core-core repulsion = 23592.106363 eV Total energy + Delta-G solvation = -3881.078439 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.13814 -41.26331 -39.46161 -36.95767 -35.74283 -35.39170 -33.57922 -32.63675 -32.09498 -31.16131 -30.11908 -27.58756 -27.01875 -25.29481 -23.93698 -23.60703 -22.19771 -21.53052 -20.94636 -20.31874 -18.90067 -18.59856 -18.00031 -17.34262 -17.08061 -16.82477 -16.58983 -16.08608 -15.86181 -15.61295 -15.24427 -15.03709 -14.87215 -14.67453 -14.29881 -14.06838 -13.86098 -13.79270 -13.56783 -13.52848 -13.25605 -13.10007 -12.98823 -12.77799 -12.68696 -12.39922 -12.37210 -12.16113 -12.00383 -11.85140 -11.43243 -11.31615 -11.06159 -10.95536 -10.53253 -10.40122 -10.05278 -9.22140 -8.72722 -7.90858 -5.36426 0.96769 1.45705 1.49108 1.49533 1.58005 1.58045 1.90415 2.25710 2.48379 3.13926 3.25730 3.50768 3.64085 3.65487 3.85205 3.89260 4.03998 4.05400 4.12727 4.23467 4.32021 4.37011 4.46423 4.51890 4.55040 4.65134 4.69309 4.77648 4.86095 4.93825 4.97386 5.03211 5.03636 5.12158 5.29164 5.34394 5.40210 5.50077 5.61970 5.69176 5.80073 6.12433 6.34091 6.49290 6.77890 6.86811 7.10859 7.16941 7.79642 8.30379 9.15360 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015192 B = 0.002802 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.648095 B = 9990.437016 C =11032.123905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.255 4.255 3 C 0.040 3.960 4 N -0.333 5.333 5 N -0.380 5.380 6 C 0.157 3.843 7 C -0.139 4.139 8 C 0.521 3.479 9 O -0.580 6.580 10 N -0.701 5.701 11 C 0.168 3.832 12 H 0.077 0.923 13 C -0.139 4.139 14 C 0.184 3.816 15 N -0.602 5.602 16 C -0.263 4.263 17 H 0.071 0.929 18 C -0.047 4.047 19 N -0.931 5.931 20 Si 0.964 3.036 21 H -0.265 1.265 22 H -0.293 1.293 23 H -0.294 1.294 24 C 0.118 3.882 25 C 0.095 3.905 26 H 0.070 0.930 27 O -0.571 6.571 28 C 0.048 3.952 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.203 0.797 33 H 0.115 0.885 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.406 0.594 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.004 0.996 42 H 0.249 0.751 43 H 0.068 0.932 44 H 0.025 0.975 45 H 0.395 0.605 46 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.230 7.772 12.844 17.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.267 4.267 3 C -0.145 4.145 4 N -0.155 5.155 5 N -0.163 5.163 6 C 0.036 3.964 7 C -0.179 4.179 8 C 0.308 3.692 9 O -0.461 6.461 10 N -0.352 5.352 11 C 0.063 3.937 12 H 0.095 0.905 13 C -0.179 4.179 14 C 0.059 3.941 15 N -0.327 5.327 16 C -0.392 4.392 17 H 0.089 0.911 18 C -0.243 4.243 19 N -0.576 5.576 20 Si 0.793 3.207 21 H -0.190 1.190 22 H -0.220 1.220 23 H -0.221 1.221 24 C -0.008 4.008 25 C 0.034 3.966 26 H 0.088 0.912 27 O -0.378 6.378 28 C -0.098 4.098 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.220 0.780 33 H 0.133 0.867 34 H 0.104 0.896 35 H 0.127 0.873 36 H 0.121 0.879 37 H 0.242 0.758 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.022 0.978 42 H 0.059 0.941 43 H 0.086 0.914 44 H 0.042 0.958 45 H 0.245 0.755 46 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -7.309 7.179 13.740 17.139 hybrid contribution -0.084 -0.416 -1.752 1.803 sum -7.393 6.763 11.988 15.624 Atomic orbital electron populations 1.20076 0.87427 1.03034 1.02038 1.20553 0.98514 0.91485 1.16133 1.24308 0.89646 1.01233 0.99339 1.77269 1.22680 0.89819 1.25694 1.48716 1.06025 1.04489 1.57030 1.21352 0.83151 0.93118 0.98802 1.21740 0.93913 1.01221 1.01048 1.20631 0.84427 0.83605 0.80558 1.90665 1.79097 1.37495 1.38815 1.45923 1.21020 1.38343 1.29869 1.20712 0.84113 0.89690 0.99181 0.90533 1.22388 1.01615 0.96350 0.97592 1.20500 0.89148 0.95353 0.89138 1.44192 1.45694 1.21673 1.21138 1.19525 0.96204 1.29403 0.94116 0.91092 1.25752 0.95479 1.03078 0.99975 1.70174 1.05282 1.42498 1.39674 0.85261 0.78638 0.78024 0.78815 1.18959 1.21957 1.22130 1.21671 0.98291 0.88588 0.92282 1.22348 0.96244 0.86507 0.91534 0.91193 1.86454 1.59544 1.36196 1.55630 1.22948 0.83607 1.01638 1.01571 0.91813 0.91246 0.90952 0.78008 0.86705 0.89557 0.87327 0.87910 0.75786 0.91234 0.92022 0.92763 0.97760 0.94142 0.91393 0.95757 0.75488 0.78547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.37 71.23 0.74 -0.09 16 2 C -0.26 -4.74 6.10 -20.15 -0.12 -4.86 16 3 C 0.04 0.84 11.96 85.24 1.02 1.86 16 4 N -0.33 -8.60 12.42 -57.03 -0.71 -9.31 16 5 N -0.38 -8.87 3.68 -348.07 -1.28 -10.15 16 6 C 0.16 3.55 5.80 86.38 0.50 4.05 16 7 C -0.14 -3.37 5.88 29.85 0.18 -3.19 16 8 C 0.52 15.87 7.79 87.66 0.68 16.55 16 9 O -0.58 -20.66 15.64 -3.04 -0.05 -20.71 16 10 N -0.70 -22.03 4.15 -442.42 -1.84 -23.87 16 11 C 0.17 5.66 2.47 45.02 0.11 5.77 16 12 H 0.08 2.68 7.58 -2.38 -0.02 2.66 16 13 C -0.14 -5.25 5.77 30.67 0.18 -5.07 16 14 C 0.18 8.42 5.05 86.36 0.44 8.85 16 15 N -0.60 -27.74 2.99 -699.09 -2.09 -29.84 16 16 C -0.26 -13.49 9.58 84.04 0.81 -12.69 16 17 H 0.07 3.53 7.89 -2.91 -0.02 3.50 16 18 C -0.05 -2.50 4.91 84.86 0.42 -2.09 16 19 N -0.93 -52.81 11.19 21.65 0.24 -52.56 16 20 Si 0.96 43.15 29.59 68.60 2.03 45.18 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 22 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 23 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 24 C 0.12 4.28 5.84 86.36 0.50 4.79 16 25 C 0.09 2.94 3.36 30.67 0.10 3.05 16 26 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 27 O -0.57 -15.19 13.21 -148.98 -1.97 -17.16 16 28 C 0.05 0.92 11.36 83.54 0.95 1.87 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.20 2.89 8.06 -2.91 -0.02 2.87 16 33 H 0.11 2.32 8.03 -2.39 -0.02 2.30 16 34 H 0.09 2.05 8.10 -2.39 -0.02 2.03 16 35 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.41 12.38 6.87 -92.71 -0.64 11.74 16 38 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 40 H 0.05 2.87 6.04 -2.38 -0.01 2.86 16 41 H 0.00 0.21 7.74 -2.39 -0.02 0.19 16 42 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 43 H 0.07 2.34 7.93 -2.39 -0.02 2.32 16 44 H 0.02 0.89 6.65 -2.38 -0.02 0.88 16 45 H 0.40 6.99 9.08 -74.06 -0.67 6.32 16 46 H 0.20 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -68.39 375.90 0.53 -67.87 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: -0.31 Total: 31.75 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: 6.50 Total: 18.80 kcal Atomic # 7 Polarization: -120.06 SS G_CDS: -5.68 Total: -125.73 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -2.02 Total: -37.86 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -68.39 0.53 -67.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100126712.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.732 kcal (2) G-P(sol) polarization free energy of solvation -68.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds