Wall clock time and date at job start Tue Mar 31 2020 05:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39870 * 126.03942 * 2 1 4 4 N 1.30835 * 108.20119 * 179.97438 * 3 2 1 5 5 N 1.40086 * 108.20711 * 359.97438 * 4 3 2 6 6 C 1.46496 * 126.03407 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47513 * 304.97491 * 6 5 4 8 8 C 1.50697 * 109.47647 * 180.02562 * 7 6 5 9 9 O 1.21286 * 119.99506 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00348 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00029 * 180.02562 * 10 8 7 12 12 H 1.09007 * 109.46100 * 324.97141 * 11 10 8 13 13 C 1.53037 * 109.46129 * 84.92887 * 11 10 8 14 14 C 1.53195 * 109.31555 * 181.38537 * 13 11 10 15 15 N 1.46925 * 108.77317 * 305.36814 * 14 13 11 16 16 C 1.36933 * 120.63094 * 233.62638 * 15 14 13 17 17 H 1.08005 * 120.00282 * 152.60636 * 16 15 14 18 18 C 1.38810 * 120.00205 * 332.60665 * 16 15 14 19 19 N 1.31623 * 120.00165 * 159.36308 * 18 16 15 20 20 Si 1.86801 * 119.99847 * 339.35625 * 18 16 15 21 21 H 1.48503 * 109.47005 * 92.90280 * 20 18 16 22 22 H 1.48494 * 109.47487 * 212.90062 * 20 18 16 23 23 H 1.48500 * 109.47289 * 332.90561 * 20 18 16 24 24 C 1.46935 * 118.74000 * 53.60922 * 15 14 13 25 25 C 1.53035 * 109.46135 * 205.00020 * 11 10 8 26 26 H 1.08997 * 109.50202 * 298.56825 * 25 11 10 27 27 O 1.42908 * 109.49842 * 58.66316 * 25 11 10 28 28 C 1.34942 * 107.92475 * 359.76378 * 5 4 3 29 29 H 1.09005 * 109.47193 * 90.02653 * 1 2 3 30 30 H 1.09001 * 109.47003 * 210.02331 * 1 2 3 31 31 H 1.09001 * 109.47498 * 330.02527 * 1 2 3 32 32 H 1.08001 * 125.90157 * 359.95540 * 3 2 1 33 33 H 1.08991 * 109.47452 * 64.98185 * 6 5 4 34 34 H 1.09005 * 109.47091 * 184.98217 * 6 5 4 35 35 H 1.09003 * 109.47233 * 300.00340 * 7 6 5 36 36 H 1.09006 * 109.47080 * 60.00130 * 7 6 5 37 37 H 0.96993 * 120.00107 * 0.02562 * 10 8 7 38 38 H 1.08998 * 109.50031 * 301.34416 * 13 11 10 39 39 H 1.09003 * 109.49185 * 61.43654 * 13 11 10 40 40 H 1.08998 * 109.58859 * 185.58497 * 14 13 11 41 41 H 1.08993 * 109.69949 * 65.22373 * 14 13 11 42 42 H 0.97003 * 119.99518 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.58420 * 186.60173 * 24 15 14 44 44 H 1.08995 * 109.58524 * 66.17454 * 24 15 14 45 45 H 0.96698 * 114.00356 * 179.97438 * 27 25 11 46 46 H 1.07998 * 126.13131 * 180.23949 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5753 0.7302 0.0006 5 7 3.5844 -0.6706 0.0015 6 6 4.7746 -1.5247 0.0029 7 6 5.6719 -1.1512 -1.1787 8 6 6.8959 -2.0302 -1.1777 9 8 7.0365 -2.8730 -0.3168 10 7 7.8343 -1.8800 -2.1333 11 6 9.0240 -2.7350 -2.1325 12 1 9.3186 -2.9464 -1.1046 13 6 8.7086 -4.0481 -2.8525 14 6 9.9440 -4.9534 -2.8195 15 7 11.0850 -4.2169 -3.3800 16 6 11.8225 -4.7473 -4.4046 17 1 12.3365 -4.0943 -5.0945 18 6 11.9094 -6.1243 -4.5568 19 7 12.2508 -6.6377 -5.7197 20 14 11.5421 -7.2488 -3.1111 21 1 10.1118 -7.6468 -3.1445 22 1 12.3953 -8.4611 -3.1976 23 1 11.8270 -6.5324 -1.8419 24 6 11.4196 -2.9001 -2.8204 25 6 10.1677 -2.0179 -2.8535 26 1 9.8833 -1.8284 -3.8885 27 8 10.4410 -0.7775 -2.1986 28 6 2.3032 -1.0942 0.0068 29 1 -0.3634 -0.0005 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5134 32 1 1.9951 2.1578 -0.0007 33 1 5.3225 -1.3829 0.9343 34 1 4.4729 -2.5685 -0.0858 35 1 5.1239 -1.2931 -2.1102 36 1 5.9736 -0.1075 -1.0901 37 1 7.7221 -1.2058 -2.8215 38 1 7.8785 -4.5470 -2.3524 39 1 8.4379 -3.8395 -3.8875 40 1 9.7580 -5.8472 -3.4150 41 1 10.1630 -5.2388 -1.7907 42 1 12.3119 -7.6000 -5.8259 43 1 12.2073 -2.4392 -3.4165 44 1 11.7580 -3.0159 -1.7908 45 1 11.1570 -0.2686 -2.6029 46 1 1.9723 -2.1222 0.0125 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100126713.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:20 Heat of formation + Delta-G solvation = 13.533549 kcal Electronic energy + Delta-G solvation = -27050.810437 eV Core-core repulsion = 23170.888364 eV Total energy + Delta-G solvation = -3879.922073 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.46545 -40.03229 -38.29671 -35.69745 -34.86214 -34.43523 -32.22679 -31.96484 -30.96305 -30.06062 -29.19083 -26.85242 -25.36105 -24.17649 -22.82131 -22.05695 -21.02991 -20.61555 -20.25660 -19.72115 -17.70752 -17.21741 -16.81661 -16.45233 -16.20769 -15.87484 -15.30370 -14.90234 -14.58872 -14.53130 -14.06697 -13.96228 -13.76626 -13.57247 -13.29156 -13.14288 -13.04351 -12.80921 -12.55210 -12.39858 -12.30129 -12.18483 -12.05443 -11.64334 -11.60560 -11.23924 -11.06583 -10.76738 -10.27586 -10.22103 -10.09301 -9.93138 -9.79290 -9.64727 -9.58201 -8.90820 -8.71096 -8.58287 -7.12280 -6.04539 -3.42706 1.63460 2.18700 2.53479 2.59532 3.20127 3.27399 3.44527 3.47649 4.19698 4.24139 4.45174 4.46169 4.55523 4.69929 4.80860 4.85799 4.99116 5.04091 5.10451 5.16465 5.28229 5.33002 5.35942 5.41867 5.48753 5.50966 5.59105 5.69504 5.73994 5.74126 5.87206 5.96415 6.16413 6.22742 6.33714 6.41097 6.46839 6.51849 6.60630 6.73965 6.75074 7.45161 7.50839 7.72301 7.86691 8.19831 8.21578 8.80779 9.60474 9.95493 11.10738 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023942 B = 0.002381 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.230739 B =11757.772936 C =12417.555155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.247 4.247 3 C 0.047 3.953 4 N -0.294 5.294 5 N -0.370 5.370 6 C 0.151 3.849 7 C -0.152 4.152 8 C 0.518 3.482 9 O -0.546 6.546 10 N -0.712 5.712 11 C 0.161 3.839 12 H 0.090 0.910 13 C -0.140 4.140 14 C 0.126 3.874 15 N -0.602 5.602 16 C -0.267 4.267 17 H 0.087 0.913 18 C 0.027 3.973 19 N -0.904 5.904 20 Si 0.881 3.119 21 H -0.287 1.287 22 H -0.301 1.301 23 H -0.269 1.269 24 C 0.124 3.876 25 C 0.079 3.921 26 H 0.061 0.939 27 O -0.570 6.570 28 C 0.056 3.944 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.181 0.819 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.400 0.600 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.031 0.969 42 H 0.264 0.736 43 H 0.070 0.930 44 H 0.034 0.966 45 H 0.377 0.623 46 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.396 14.076 8.864 25.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.259 4.259 3 C -0.140 4.140 4 N -0.115 5.115 5 N -0.152 5.152 6 C 0.030 3.970 7 C -0.193 4.193 8 C 0.304 3.696 9 O -0.424 6.424 10 N -0.361 5.361 11 C 0.057 3.943 12 H 0.108 0.892 13 C -0.180 4.180 14 C 0.000 4.000 15 N -0.327 5.327 16 C -0.394 4.394 17 H 0.104 0.896 18 C -0.173 4.173 19 N -0.547 5.547 20 Si 0.711 3.289 21 H -0.214 1.214 22 H -0.229 1.229 23 H -0.194 1.194 24 C -0.004 4.004 25 C 0.018 3.982 26 H 0.079 0.921 27 O -0.374 6.374 28 C -0.091 4.091 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.198 0.802 33 H 0.113 0.887 34 H 0.123 0.877 35 H 0.115 0.885 36 H 0.125 0.875 37 H 0.233 0.767 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.049 0.951 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.052 0.948 45 H 0.224 0.776 46 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -18.336 13.379 9.759 24.707 hybrid contribution -0.563 -0.529 -0.078 0.777 sum -18.899 12.850 9.681 24.820 Atomic orbital electron populations 1.20036 0.89364 1.02052 1.01485 1.20158 0.97127 0.91906 1.16710 1.23804 0.89992 0.99798 1.00367 1.77334 1.21265 0.88951 1.23986 1.48681 1.05489 1.04731 1.56347 1.21436 0.83187 0.92634 0.99769 1.21865 0.95070 1.02038 1.00292 1.20250 0.84100 0.83901 0.81397 1.90727 1.78334 1.35959 1.37376 1.46022 1.21555 1.38541 1.30031 1.20972 0.82642 0.89460 1.01187 0.89227 1.22423 0.99841 0.95196 1.00585 1.21385 0.86147 0.95047 0.97444 1.44320 1.30857 1.17122 1.40366 1.18877 1.27090 0.90819 1.02656 0.89558 1.25273 0.98593 0.96777 0.96663 1.69831 1.50804 1.12057 1.21972 0.86982 0.76770 0.80365 0.84736 1.21449 1.22940 1.19421 1.21559 0.94082 0.86856 0.97855 1.22730 0.96306 0.84190 0.94956 0.92065 1.86475 1.58421 1.33304 1.59230 1.22393 0.84159 1.00166 1.02335 0.92192 0.92238 0.91961 0.80214 0.88743 0.87673 0.88464 0.87456 0.76652 0.91477 0.91278 0.90322 0.95116 0.92608 0.91127 0.94797 0.77644 0.81038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.37 36.01 0.37 -0.04 16 2 C -0.25 -2.11 6.10 -105.05 -0.64 -2.75 16 3 C 0.05 0.44 11.96 -17.37 -0.21 0.23 16 4 N -0.29 -3.40 12.42 30.62 0.38 -3.02 16 5 N -0.37 -3.82 3.68 -61.37 -0.23 -4.05 16 6 C 0.15 1.48 5.80 -4.04 -0.02 1.45 16 7 C -0.15 -1.49 5.89 -27.88 -0.16 -1.65 16 8 C 0.52 6.85 7.79 -10.99 -0.09 6.77 16 9 O -0.55 -9.14 15.65 5.55 0.09 -9.05 16 10 N -0.71 -9.35 4.92 -53.77 -0.26 -9.62 16 11 C 0.16 2.61 2.12 -67.89 -0.14 2.47 16 12 H 0.09 1.66 7.58 -51.93 -0.39 1.27 16 13 C -0.14 -2.48 5.65 -26.61 -0.15 -2.63 16 14 C 0.13 2.70 4.21 -3.71 -0.02 2.69 16 15 N -0.60 -13.70 2.77 -172.32 -0.48 -14.18 16 16 C -0.27 -7.16 10.03 -15.06 -0.15 -7.31 16 17 H 0.09 2.45 8.06 -52.48 -0.42 2.03 16 18 C 0.03 0.75 5.23 -17.43 -0.09 0.66 16 19 N -0.90 -27.04 13.97 55.49 0.78 -26.27 16 20 Si 0.88 22.07 24.34 -169.99 -4.14 17.93 16 21 H -0.29 -6.94 6.62 56.52 0.37 -6.57 16 22 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 23 H -0.27 -6.69 6.64 56.52 0.38 -6.31 16 24 C 0.12 2.30 6.14 -3.71 -0.02 2.27 16 25 C 0.08 1.22 3.14 -26.61 -0.08 1.14 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 27 O -0.57 -7.73 13.16 -35.23 -0.46 -8.19 16 28 C 0.06 0.48 11.36 -17.22 -0.20 0.29 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.18 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.09 1.01 8.10 -51.93 -0.42 0.58 16 34 H 0.11 0.91 8.03 -51.93 -0.42 0.49 16 35 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.40 4.31 8.60 -40.82 -0.35 3.96 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.08 1.84 4.50 -51.93 -0.23 1.61 16 41 H 0.03 0.67 7.07 -51.93 -0.37 0.31 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.38 3.59 9.08 45.56 0.41 4.00 16 46 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 373.70 15.07 5.63 5.63 Total: -1.00 -34.12 373.70 -6.74 -40.86 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -6.44 Total: 6.37 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -1.60 Total: 3.57 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: 0.19 Total: -57.13 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.38 Total: -17.24 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.14 Total: 17.93 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.12 -6.74 -40.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100126713.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.396 kcal (2) G-P(sol) polarization free energy of solvation -34.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds