Wall clock time and date at job start Tue Mar 31 2020 05:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39870 * 126.03942 * 2 1 4 4 N 1.30835 * 108.20119 * 179.97438 * 3 2 1 5 5 N 1.40086 * 108.20711 * 359.97438 * 4 3 2 6 6 C 1.46496 * 126.03407 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47513 * 304.97491 * 6 5 4 8 8 C 1.50697 * 109.47647 * 180.02562 * 7 6 5 9 9 O 1.21286 * 119.99506 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00348 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00029 * 180.02562 * 10 8 7 12 12 H 1.09007 * 109.46100 * 324.97141 * 11 10 8 13 13 C 1.53037 * 109.46129 * 84.92887 * 11 10 8 14 14 C 1.53195 * 109.31555 * 181.38537 * 13 11 10 15 15 N 1.46925 * 108.77317 * 305.36814 * 14 13 11 16 16 C 1.36933 * 120.63094 * 233.62638 * 15 14 13 17 17 H 1.08005 * 120.00282 * 152.60636 * 16 15 14 18 18 C 1.38810 * 120.00205 * 332.60665 * 16 15 14 19 19 N 1.31623 * 120.00165 * 159.36308 * 18 16 15 20 20 Si 1.86801 * 119.99847 * 339.35625 * 18 16 15 21 21 H 1.48503 * 109.47005 * 92.90280 * 20 18 16 22 22 H 1.48494 * 109.47487 * 212.90062 * 20 18 16 23 23 H 1.48500 * 109.47289 * 332.90561 * 20 18 16 24 24 C 1.46935 * 118.74000 * 53.60922 * 15 14 13 25 25 C 1.53035 * 109.46135 * 205.00020 * 11 10 8 26 26 H 1.08997 * 109.50202 * 298.56825 * 25 11 10 27 27 O 1.42908 * 109.49842 * 58.66316 * 25 11 10 28 28 C 1.34942 * 107.92475 * 359.76378 * 5 4 3 29 29 H 1.09005 * 109.47193 * 90.02653 * 1 2 3 30 30 H 1.09001 * 109.47003 * 210.02331 * 1 2 3 31 31 H 1.09001 * 109.47498 * 330.02527 * 1 2 3 32 32 H 1.08001 * 125.90157 * 359.95540 * 3 2 1 33 33 H 1.08991 * 109.47452 * 64.98185 * 6 5 4 34 34 H 1.09005 * 109.47091 * 184.98217 * 6 5 4 35 35 H 1.09003 * 109.47233 * 300.00340 * 7 6 5 36 36 H 1.09006 * 109.47080 * 60.00130 * 7 6 5 37 37 H 0.96993 * 120.00107 * 0.02562 * 10 8 7 38 38 H 1.08998 * 109.50031 * 301.34416 * 13 11 10 39 39 H 1.09003 * 109.49185 * 61.43654 * 13 11 10 40 40 H 1.08998 * 109.58859 * 185.58497 * 14 13 11 41 41 H 1.08993 * 109.69949 * 65.22373 * 14 13 11 42 42 H 0.97003 * 119.99518 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.58420 * 186.60173 * 24 15 14 44 44 H 1.08995 * 109.58524 * 66.17454 * 24 15 14 45 45 H 0.96698 * 114.00356 * 179.97438 * 27 25 11 46 46 H 1.07998 * 126.13131 * 180.23949 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5753 0.7302 0.0006 5 7 3.5844 -0.6706 0.0015 6 6 4.7746 -1.5247 0.0029 7 6 5.6719 -1.1512 -1.1787 8 6 6.8959 -2.0302 -1.1777 9 8 7.0365 -2.8730 -0.3168 10 7 7.8343 -1.8800 -2.1333 11 6 9.0240 -2.7350 -2.1325 12 1 9.3186 -2.9464 -1.1046 13 6 8.7086 -4.0481 -2.8525 14 6 9.9440 -4.9534 -2.8195 15 7 11.0850 -4.2169 -3.3800 16 6 11.8225 -4.7473 -4.4046 17 1 12.3365 -4.0943 -5.0945 18 6 11.9094 -6.1243 -4.5568 19 7 12.2508 -6.6377 -5.7197 20 14 11.5421 -7.2488 -3.1111 21 1 10.1118 -7.6468 -3.1445 22 1 12.3953 -8.4611 -3.1976 23 1 11.8270 -6.5324 -1.8419 24 6 11.4196 -2.9001 -2.8204 25 6 10.1677 -2.0179 -2.8535 26 1 9.8833 -1.8284 -3.8885 27 8 10.4410 -0.7775 -2.1986 28 6 2.3032 -1.0942 0.0068 29 1 -0.3634 -0.0005 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5134 32 1 1.9951 2.1578 -0.0007 33 1 5.3225 -1.3829 0.9343 34 1 4.4729 -2.5685 -0.0858 35 1 5.1239 -1.2931 -2.1102 36 1 5.9736 -0.1075 -1.0901 37 1 7.7221 -1.2058 -2.8215 38 1 7.8785 -4.5470 -2.3524 39 1 8.4379 -3.8395 -3.8875 40 1 9.7580 -5.8472 -3.4150 41 1 10.1630 -5.2388 -1.7907 42 1 12.3119 -7.6000 -5.8259 43 1 12.2073 -2.4392 -3.4165 44 1 11.7580 -3.0159 -1.7908 45 1 11.1570 -0.2686 -2.6029 46 1 1.9723 -2.1222 0.0125 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100126713.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:19 Heat of formation + Delta-G solvation = -13.204972 kcal Electronic energy + Delta-G solvation = -27051.969906 eV Core-core repulsion = 23170.888364 eV Total energy + Delta-G solvation = -3881.081542 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.13997 -41.20330 -39.63828 -37.14008 -35.92127 -35.43463 -34.04315 -32.66684 -32.18638 -31.24821 -30.60387 -27.67878 -26.74679 -25.17920 -24.31269 -23.63010 -21.82943 -21.57327 -21.34327 -20.81936 -19.04270 -18.46462 -18.08993 -17.78632 -17.21189 -16.91213 -16.71137 -16.21649 -16.02455 -15.52880 -15.22312 -15.13408 -14.89063 -14.58282 -14.54653 -14.10786 -14.04715 -13.89967 -13.75953 -13.75551 -13.50977 -13.20622 -13.06079 -12.96362 -12.70406 -12.67321 -12.38786 -12.17842 -11.90739 -11.66438 -11.49497 -11.42986 -11.18780 -11.05454 -10.69030 -10.40144 -10.11838 -9.22517 -9.03359 -8.20805 -5.54257 0.96384 1.26969 1.39304 1.46660 1.47420 1.54966 1.89917 2.17107 2.37105 2.89993 3.09807 3.33338 3.50125 3.61515 3.78437 3.86004 3.97984 4.04012 4.07505 4.12955 4.22078 4.29482 4.31834 4.46916 4.53779 4.55218 4.67078 4.68491 4.77855 4.78763 4.83763 4.88113 4.96842 5.00883 5.03671 5.22957 5.29163 5.34316 5.40794 5.79467 5.79919 6.08248 6.12110 6.48135 6.77087 6.77436 6.89464 7.17233 7.54330 7.94098 8.98151 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023942 B = 0.002381 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.230739 B =11757.772936 C =12417.555155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.255 4.255 3 C 0.041 3.959 4 N -0.333 5.333 5 N -0.380 5.380 6 C 0.153 3.847 7 C -0.135 4.135 8 C 0.519 3.481 9 O -0.582 6.582 10 N -0.703 5.703 11 C 0.167 3.833 12 H 0.067 0.933 13 C -0.127 4.127 14 C 0.121 3.879 15 N -0.613 5.613 16 C -0.248 4.248 17 H 0.064 0.936 18 C -0.028 4.028 19 N -0.950 5.950 20 Si 0.936 3.064 21 H -0.275 1.275 22 H -0.309 1.309 23 H -0.267 1.267 24 C 0.119 3.881 25 C 0.099 3.901 26 H 0.071 0.929 27 O -0.569 6.569 28 C 0.049 3.951 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.202 0.798 33 H 0.080 0.920 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.414 0.586 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.028 0.972 42 H 0.263 0.737 43 H 0.077 0.923 44 H 0.033 0.967 45 H 0.397 0.603 46 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.597 15.561 9.667 28.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.267 4.267 3 C -0.145 4.145 4 N -0.154 5.154 5 N -0.162 5.162 6 C 0.031 3.969 7 C -0.175 4.175 8 C 0.306 3.694 9 O -0.462 6.462 10 N -0.354 5.354 11 C 0.062 3.938 12 H 0.085 0.915 13 C -0.167 4.167 14 C -0.004 4.004 15 N -0.339 5.339 16 C -0.378 4.378 17 H 0.081 0.919 18 C -0.224 4.224 19 N -0.595 5.595 20 Si 0.766 3.234 21 H -0.202 1.202 22 H -0.238 1.238 23 H -0.192 1.192 24 C -0.007 4.007 25 C 0.038 3.962 26 H 0.088 0.912 27 O -0.376 6.376 28 C -0.097 4.097 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.219 0.781 33 H 0.098 0.902 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.251 0.749 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.046 0.954 42 H 0.072 0.928 43 H 0.095 0.905 44 H 0.051 0.949 45 H 0.247 0.753 46 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -20.562 14.936 10.578 27.527 hybrid contribution 0.111 -0.852 -0.298 0.909 sum -20.451 14.084 10.279 26.875 Atomic orbital electron populations 1.20079 0.87542 1.02936 1.02098 1.20547 0.98452 0.91543 1.16129 1.24300 0.89670 1.01208 0.99334 1.77279 1.22594 0.89806 1.25714 1.48706 1.05989 1.04466 1.57058 1.21376 0.83258 0.93190 0.99026 1.21734 0.93458 1.01079 1.01242 1.20779 0.84595 0.83548 0.80450 1.90717 1.79127 1.37652 1.38712 1.45842 1.20583 1.38344 1.30591 1.20658 0.84114 0.89427 0.99609 0.91451 1.22229 0.97945 0.95379 1.01187 1.21364 0.87358 0.95203 0.96488 1.44405 1.31084 1.18501 1.39921 1.18865 1.25789 0.90467 1.02651 0.91873 1.25818 0.99856 0.98282 0.98406 1.69937 1.53748 1.12162 1.23690 0.86083 0.76998 0.78389 0.81966 1.20210 1.23780 1.19183 1.21752 0.96107 0.85397 0.97457 1.22303 0.94267 0.84250 0.95410 0.91163 1.86453 1.59498 1.32289 1.59388 1.22934 0.83591 1.01585 1.01558 0.91633 0.91360 0.91130 0.78112 0.90179 0.86622 0.86609 0.87158 0.74934 0.90899 0.90819 0.92403 0.95433 0.92838 0.90489 0.94946 0.75280 0.78528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.37 71.24 0.74 0.11 16 2 C -0.26 -3.83 6.10 -20.14 -0.12 -3.95 16 3 C 0.04 0.70 11.96 85.24 1.02 1.71 16 4 N -0.33 -7.25 12.42 -57.02 -0.71 -7.96 16 5 N -0.38 -7.24 3.68 -348.08 -1.28 -8.52 16 6 C 0.15 2.77 5.80 86.38 0.50 3.27 16 7 C -0.13 -2.35 5.89 29.85 0.18 -2.18 16 8 C 0.52 12.75 7.79 87.66 0.68 13.43 16 9 O -0.58 -18.82 15.65 -3.05 -0.05 -18.86 16 10 N -0.70 -16.79 4.92 -442.41 -2.18 -18.96 16 11 C 0.17 5.09 2.12 45.02 0.10 5.19 16 12 H 0.07 2.41 7.58 -2.38 -0.02 2.39 16 13 C -0.13 -4.30 5.65 30.67 0.17 -4.13 16 14 C 0.12 5.12 4.21 86.36 0.36 5.49 16 15 N -0.61 -27.55 2.77 -699.09 -1.94 -29.49 16 16 C -0.25 -13.45 10.03 84.03 0.84 -12.61 16 17 H 0.06 3.66 8.06 -2.91 -0.02 3.64 16 18 C -0.03 -1.60 5.23 84.86 0.44 -1.16 16 19 N -0.95 -58.09 13.97 21.65 0.30 -57.79 16 20 Si 0.94 46.21 24.34 68.60 1.67 47.88 16 21 H -0.28 -12.92 6.62 99.48 0.66 -12.26 16 22 H -0.31 -15.50 7.11 99.48 0.71 -14.80 16 23 H -0.27 -12.90 6.64 99.48 0.66 -12.24 16 24 C 0.12 4.25 6.14 86.36 0.53 4.78 16 25 C 0.10 2.83 3.14 30.67 0.10 2.93 16 26 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 27 O -0.57 -13.74 13.16 -148.98 -1.96 -15.70 16 28 C 0.05 0.75 11.36 83.54 0.95 1.70 16 29 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.20 2.22 8.06 -2.91 -0.02 2.20 16 33 H 0.08 1.66 8.10 -2.39 -0.02 1.64 16 34 H 0.12 1.81 8.03 -2.38 -0.02 1.79 16 35 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 37 H 0.41 7.63 8.60 -92.71 -0.80 6.83 16 38 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.06 2.68 4.50 -2.39 -0.01 2.67 16 41 H 0.03 1.18 7.07 -2.39 -0.02 1.17 16 42 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 43 H 0.08 2.62 7.93 -2.39 -0.02 2.60 16 44 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.40 6.24 9.08 -74.06 -0.67 5.57 16 46 H 0.20 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -74.19 373.70 -0.21 -74.40 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -0.56 Total: 20.43 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 6.49 Total: 14.58 kcal Atomic # 7 Polarization: -116.93 SS G_CDS: -5.80 Total: -122.72 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -2.01 Total: -34.56 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.67 Total: 47.88 kcal Total: -74.19 -0.21 -74.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100126713.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.190 kcal (2) G-P(sol) polarization free energy of solvation -74.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds